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Conserved domains on  [gi|17531395|ref|NP_495104|]
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Nematode cuticle collagen N-terminal domain-containing protein [Caenorhabditis elegans]

Protein Classification

cuticular collagen family protein( domain architecture ID 18387949)

cuticular collagen family protein is a structural macromolecule of the extracellular matrix containing triple helix domains that form tight interactions and stabilize supramolecular aggregates

Gene Ontology:  GO:0042302|GO:0005581
PubMed:  1916105|21421911

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Col_cuticle_N smart01088
Nematode cuticle collagen N-terminal domain; The function of this domain is unknown. It is ...
15-60 2.56e-16

Nematode cuticle collagen N-terminal domain; The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens. Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins.


:

Pssm-ID: 198156  Cd Length: 53  Bit Score: 71.73  E-value: 2.56e-16
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 17531395     15 KVAFLGICISTVSTLTCIIAIPLLYNYMQHVQTNLHSEIDFCRHRT 60
Cdd:smart01088   1 LVAYVAVAVSTVAVLSALVTLPSIYNDIQSFQSELLDEMDEFKARA 46
gly_rich_SclB super family cl45768
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
135-279 4.19e-13

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


The actual alignment was detected with superfamily member NF038329:

Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 69.16  E-value: 4.19e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17531395  135 DGRDGKPGLNGEDGTDAKDSAPRRDAAAPC-YDCPVGPPGPPGNIGSKGQPGRNGKDGLPGVPGLPGQPGEPGDDGEPGE 213
Cdd:NF038329 206 QGPAGPAGPDGEAGPAGEDGPAGPAGDGQQgPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGP 285
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 17531395  214 DGDPGQPGDNGEPGKcdevnvaqgppgspgpPGLPGPDGLPGTPGNPGQDGEQGPAGEPGRDGKDG 279
Cdd:NF038329 286 AGKDGQNGKDGLPGK----------------DGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDG 335
 
Name Accession Description Interval E-value
Col_cuticle_N smart01088
Nematode cuticle collagen N-terminal domain; The function of this domain is unknown. It is ...
15-60 2.56e-16

Nematode cuticle collagen N-terminal domain; The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens. Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins.


Pssm-ID: 198156  Cd Length: 53  Bit Score: 71.73  E-value: 2.56e-16
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 17531395     15 KVAFLGICISTVSTLTCIIAIPLLYNYMQHVQTNLHSEIDFCRHRT 60
Cdd:smart01088   1 LVAYVAVAVSTVAVLSALVTLPSIYNDIQSFQSELLDEMDEFKARA 46
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
135-279 4.19e-13

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 69.16  E-value: 4.19e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17531395  135 DGRDGKPGLNGEDGTDAKDSAPRRDAAAPC-YDCPVGPPGPPGNIGSKGQPGRNGKDGLPGVPGLPGQPGEPGDDGEPGE 213
Cdd:NF038329 206 QGPAGPAGPDGEAGPAGEDGPAGPAGDGQQgPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGP 285
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 17531395  214 DGDPGQPGDNGEPGKcdevnvaqgppgspgpPGLPGPDGLPGTPGNPGQDGEQGPAGEPGRDGKDG 279
Cdd:NF038329 286 AGKDGQNGKDGLPGK----------------DGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDG 335
Col_cuticle_N pfam01484
Nematode cuticle collagen N-terminal domain; The function of this domain is unknown. It is ...
18-60 4.20e-13

Nematode cuticle collagen N-terminal domain; The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens, see pfam01391. Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins.


Pssm-ID: 460226  Cd Length: 50  Bit Score: 62.86  E-value: 4.20e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 17531395    18 FLGICISTVSTLTCIIAIPLLYNYMQHVQTNLHSEIDFCRHRT 60
Cdd:pfam01484   1 YVAVAFSTVAILSSLITLPSIYNDIQELQSEVLDEMDEFKARS 43
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
135-278 1.13e-12

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 68.01  E-value: 1.13e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17531395  135 DGRDGKPGLNGEDGTDAKDSApRRDAAAPCYDCPVGPPGPPGNIGSKGQPGRNGKDGLPGVPGLPGQPG--EPGDDGEPG 212
Cdd:NF038329 164 AGPQGEAGPQGPAGKDGEAGA-KGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGdgQQGPDGDPG 242
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 17531395  213 EDGDPGQPGDNGEPGKcdevNVAQGPPGSPGPPGLPGPDGLPGTPGNPGQDGEQGPAGEPGRDGKD 278
Cdd:NF038329 243 PTGEDGPQGPDGPAGK----DGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKD 304
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
179-229 7.20e-09

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 51.34  E-value: 7.20e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 17531395   179 GSKGQPGRNGKDGLPGVPGLPGQPGEPGDDGEPGEDGDPGQPGDNGEPGKC 229
Cdd:pfam01391   7 GPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
174-278 6.39e-07

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 50.29  E-value: 6.39e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17531395  174 PPGNIGSKGQPGRNGKDGLPGVPGLPGQPGE---------------PGDDGEPGEDGDPGQPGDNGEPGKCDEV------ 232
Cdd:NF038329 130 PAGEQGPRGDRGETGPAGPAGPPGPQGERGEkgpagpqgeagpqgpAGKDGEAGAKGPAGEKGPQGPRGETGPAgeqgpa 209
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 17531395  233 -------NVAQGPPGSPGPPGLPGPDGLPGTPGNPGQDGEQGPAGEPGRDGKD 278
Cdd:NF038329 210 gpagpdgEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPR 262
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
188-278 6.46e-04

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 41.04  E-value: 6.46e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17531395  188 GKDGLPGVPGLPGQPGEPGDDGEPGEDGDPGQPGDNGEPGKcdevnvaqgppgspgppglpgpdglpgtPGNPGQDGEQG 267
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGE----------------------------RGEKGPAGPQG 168
                         90
                 ....*....|.
gi 17531395  268 PAGEPGRDGKD 278
Cdd:NF038329 169 EAGPQGPAGKD 179
PHA03169 PHA03169
hypothetical protein; Provisional
138-278 1.46e-03

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 39.95  E-value: 1.46e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17531395  138 DGKPGLNGEDGTDAKDSAPRRDAaapcydcPVGPPGPPGNIGSKGQPGRNGKDGLPGVPGLPGQPGEPGDDGEPGEDGDP 217
Cdd:PHA03169  89 QGGPSGSGSESVGSPTPSPSGSA-------EELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQ 161
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 17531395  218 GQPGDNGEPGKcDEVNVAQGPPGSPGPPGLPGPDGLPGTPGNPGQDG--EQGPAGEPGRDGKD 278
Cdd:PHA03169 162 QPSSFLQPSHE-DSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPpdEPGEPQSPTPQQAP 223
 
Name Accession Description Interval E-value
Col_cuticle_N smart01088
Nematode cuticle collagen N-terminal domain; The function of this domain is unknown. It is ...
15-60 2.56e-16

Nematode cuticle collagen N-terminal domain; The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens. Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins.


Pssm-ID: 198156  Cd Length: 53  Bit Score: 71.73  E-value: 2.56e-16
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 17531395     15 KVAFLGICISTVSTLTCIIAIPLLYNYMQHVQTNLHSEIDFCRHRT 60
Cdd:smart01088   1 LVAYVAVAVSTVAVLSALVTLPSIYNDIQSFQSELLDEMDEFKARA 46
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
135-279 4.19e-13

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 69.16  E-value: 4.19e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17531395  135 DGRDGKPGLNGEDGTDAKDSAPRRDAAAPC-YDCPVGPPGPPGNIGSKGQPGRNGKDGLPGVPGLPGQPGEPGDDGEPGE 213
Cdd:NF038329 206 QGPAGPAGPDGEAGPAGEDGPAGPAGDGQQgPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGP 285
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 17531395  214 DGDPGQPGDNGEPGKcdevnvaqgppgspgpPGLPGPDGLPGTPGNPGQDGEQGPAGEPGRDGKDG 279
Cdd:NF038329 286 AGKDGQNGKDGLPGK----------------DGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDG 335
Col_cuticle_N pfam01484
Nematode cuticle collagen N-terminal domain; The function of this domain is unknown. It is ...
18-60 4.20e-13

Nematode cuticle collagen N-terminal domain; The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens, see pfam01391. Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins.


Pssm-ID: 460226  Cd Length: 50  Bit Score: 62.86  E-value: 4.20e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 17531395    18 FLGICISTVSTLTCIIAIPLLYNYMQHVQTNLHSEIDFCRHRT 60
Cdd:pfam01484   1 YVAVAFSTVAILSSLITLPSIYNDIQELQSEVLDEMDEFKARS 43
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
135-278 1.13e-12

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 68.01  E-value: 1.13e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17531395  135 DGRDGKPGLNGEDGTDAKDSApRRDAAAPCYDCPVGPPGPPGNIGSKGQPGRNGKDGLPGVPGLPGQPG--EPGDDGEPG 212
Cdd:NF038329 164 AGPQGEAGPQGPAGKDGEAGA-KGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGdgQQGPDGDPG 242
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 17531395  213 EDGDPGQPGDNGEPGKcdevNVAQGPPGSPGPPGLPGPDGLPGTPGNPGQDGEQGPAGEPGRDGKD 278
Cdd:NF038329 243 PTGEDGPQGPDGPAGK----DGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKD 304
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
179-229 7.20e-09

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 51.34  E-value: 7.20e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 17531395   179 GSKGQPGRNGKDGLPGVPGLPGQPGEPGDDGEPGEDGDPGQPGDNGEPGKC 229
Cdd:pfam01391   7 GPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
174-278 6.39e-07

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 50.29  E-value: 6.39e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17531395  174 PPGNIGSKGQPGRNGKDGLPGVPGLPGQPGE---------------PGDDGEPGEDGDPGQPGDNGEPGKCDEV------ 232
Cdd:NF038329 130 PAGEQGPRGDRGETGPAGPAGPPGPQGERGEkgpagpqgeagpqgpAGKDGEAGAKGPAGEKGPQGPRGETGPAgeqgpa 209
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 17531395  233 -------NVAQGPPGSPGPPGLPGPDGLPGTPGNPGQDGEQGPAGEPGRDGKD 278
Cdd:NF038329 210 gpagpdgEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPR 262
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
188-278 6.46e-04

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 41.04  E-value: 6.46e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17531395  188 GKDGLPGVPGLPGQPGEPGDDGEPGEDGDPGQPGDNGEPGKcdevnvaqgppgspgppglpgpdglpgtPGNPGQDGEQG 267
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGE----------------------------RGEKGPAGPQG 168
                         90
                 ....*....|.
gi 17531395  268 PAGEPGRDGKD 278
Cdd:NF038329 169 EAGPQGPAGKD 179
PHA03169 PHA03169
hypothetical protein; Provisional
138-278 1.46e-03

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 39.95  E-value: 1.46e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17531395  138 DGKPGLNGEDGTDAKDSAPRRDAaapcydcPVGPPGPPGNIGSKGQPGRNGKDGLPGVPGLPGQPGEPGDDGEPGEDGDP 217
Cdd:PHA03169  89 QGGPSGSGSESVGSPTPSPSGSA-------EELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQ 161
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 17531395  218 GQPGDNGEPGKcDEVNVAQGPPGSPGPPGLPGPDGLPGTPGNPGQDG--EQGPAGEPGRDGKD 278
Cdd:PHA03169 162 QPSSFLQPSHE-DSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPpdEPGEPQSPTPQQAP 223
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
203-276 3.07e-03

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 460189 [Multi-domain]  Cd Length: 57  Bit Score: 35.16  E-value: 3.07e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 17531395   203 GEPGDDGEPGEDGDPGQPGDNGEPGkcdevnvaqgppgSPGPPGLpgpdglpgtPGNPGQDGEQGPAGEPGRDG 276
Cdd:pfam01391   1 GPPGPPGPPGPPGPPGPPGPPGPPG-------------PPGPPGE---------PGPPGPPGPPGPPGPPGAPG 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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