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Conserved domains on  [gi|17534033|ref|NP_495919|]
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putative NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial [Caenorhabditis elegans]

Protein Classification

NADH_B2 superfamily-containing protein( domain architecture ID 143272)

NADH_B2 superfamily-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NADH_B2 super family cl20729
NADH dehydrogenase 1 beta subcomplex subunit 2; This family represents an accessory subunit of ...
 99-143 7.83e-10

NADH dehydrogenase 1 beta subcomplex subunit 2; This family represents an accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis.


The actual alignment was detected with superfamily member pfam14813:

Pssm-ID: 464329  Cd Length: 69  Bit Score: 51.99  E-value: 7.83e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 17534033    99 FISAVIWAWFSYHMYYHSGHLLGHWYMPYLSEFTDEELGIPKDSA 143
Cdd:pfam14813  25 VLSGAMWWWILWHLWHDPDHILGEFPYPDPSKWTDEELGIPPDDE 69
 
Name Accession Description Interval E-value
NADH_B2 pfam14813
NADH dehydrogenase 1 beta subcomplex subunit 2; This family represents an accessory subunit of ...
 99-143 7.83e-10

NADH dehydrogenase 1 beta subcomplex subunit 2; This family represents an accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis.


Pssm-ID: 464329  Cd Length: 69  Bit Score: 51.99  E-value: 7.83e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 17534033    99 FISAVIWAWFSYHMYYHSGHLLGHWYMPYLSEFTDEELGIPKDSA 143
Cdd:pfam14813  25 VLSGAMWWWILWHLWHDPDHILGEFPYPDPSKWTDEELGIPPDDE 69
 
Name Accession Description Interval E-value
NADH_B2 pfam14813
NADH dehydrogenase 1 beta subcomplex subunit 2; This family represents an accessory subunit of ...
 99-143 7.83e-10

NADH dehydrogenase 1 beta subcomplex subunit 2; This family represents an accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis.


Pssm-ID: 464329  Cd Length: 69  Bit Score: 51.99  E-value: 7.83e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 17534033    99 FISAVIWAWFSYHMYYHSGHLLGHWYMPYLSEFTDEELGIPKDSA 143
Cdd:pfam14813  25 VLSGAMWWWILWHLWHDPDHILGEFPYPDPSKWTDEELGIPPDDE 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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