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Conserved domains on  [gi|32563933|ref|NP_496208|]
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Small ribosomal subunit protein uS14m [Caenorhabditis elegans]

Protein Classification

uS14 family ribosomal protein( domain architecture ID 10446592)

uS14 family ribosomal protein similar to Homo sapiens mitochondrial 28S ribosomal protein S14 and Saccharomyces cerevisiae mitochondrial 37S ribosomal protein MRP2

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_S14 pfam00253
Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 ...
 145-197 4.97e-12

Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 from eukaryotes.


:

Pssm-ID: 459734  Cd Length: 54  Bit Score: 58.19  E-value: 4.97e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 32563933   145 KMQKARKYDHPRLILNMCQFTGRQRGKIKPYRLSRHLFRRFADRSALSGVQRA 197
Cdd:pfam00253   1 KLQKLPRNSSPTRIRNRCRLTGRPRGVIRKFGLCRICFRELALKGEIPGVKKA 53
 
Name Accession Description Interval E-value
Ribosomal_S14 pfam00253
Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 ...
 145-197 4.97e-12

Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 from eukaryotes.


Pssm-ID: 459734  Cd Length: 54  Bit Score: 58.19  E-value: 4.97e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 32563933   145 KMQKARKYDHPRLILNMCQFTGRQRGKIKPYRLSRHLFRRFADRSALSGVQRA 197
Cdd:pfam00253   1 KLQKLPRNSSPTRIRNRCRLTGRPRGVIRKFGLCRICFRELALKGEIPGVKKA 53
 
Name Accession Description Interval E-value
Ribosomal_S14 pfam00253
Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 ...
 145-197 4.97e-12

Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 from eukaryotes.


Pssm-ID: 459734  Cd Length: 54  Bit Score: 58.19  E-value: 4.97e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 32563933   145 KMQKARKYDHPRLILNMCQFTGRQRGKIKPYRLSRHLFRRFADRSALSGVQRA 197
Cdd:pfam00253   1 KLQKLPRNSSPTRIRNRCRLTGRPRGVIRKFGLCRICFRELALKGEIPGVKKA 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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