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Conserved domains on  [gi|193204754|ref|NP_496222|]
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Intrinsically Disordered Protein, expressed in Pharynx [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1096 super family cl05814
Protein of unknown function (DUF1096); This family represents the N-terminal region of several ...
 18-68 9.12e-06

Protein of unknown function (DUF1096); This family represents the N-terminal region of several proteins found in C. elegans. The family is often found with pfam02363.


The actual alignment was detected with superfamily member pfam06493:

Pssm-ID: 368941  Cd Length: 52  Bit Score: 42.77  E-value: 9.12e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 193204754   18 AIPQRTKRQNCDCTPGEAPKCGCQVMPTPEIggGQMICTCSP---PVPPKCVCT 68
Cdd:pfam06493   1 AIPIREKRQSCDCAPGQQPSCSCQQSTYTQP--QQYSCTCQPapvQQPPSCSCA 52
 
Name Accession Description Interval E-value
DUF1096 pfam06493
Protein of unknown function (DUF1096); This family represents the N-terminal region of several ...
 18-68 9.12e-06

Protein of unknown function (DUF1096); This family represents the N-terminal region of several proteins found in C. elegans. The family is often found with pfam02363.


Pssm-ID: 368941  Cd Length: 52  Bit Score: 42.77  E-value: 9.12e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 193204754   18 AIPQRTKRQNCDCTPGEAPKCGCQVMPTPEIggGQMICTCSP---PVPPKCVCT 68
Cdd:pfam06493   1 AIPIREKRQSCDCAPGQQPSCSCQQSTYTQP--QQYSCTCQPapvQQPPSCSCA 52
 
Name Accession Description Interval E-value
DUF1096 pfam06493
Protein of unknown function (DUF1096); This family represents the N-terminal region of several ...
 18-68 9.12e-06

Protein of unknown function (DUF1096); This family represents the N-terminal region of several proteins found in C. elegans. The family is often found with pfam02363.


Pssm-ID: 368941  Cd Length: 52  Bit Score: 42.77  E-value: 9.12e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 193204754   18 AIPQRTKRQNCDCTPGEAPKCGCQVMPTPEIggGQMICTCSP---PVPPKCVCT 68
Cdd:pfam06493   1 AIPIREKRQSCDCAPGQQPSCSCQQSTYTQP--QQYSCTCQPapvQQPPSCSCA 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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