NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|17533231|ref|NP_496658|]
View 

ShKT domain-containing protein [Caenorhabditis elegans]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ShK pfam01549
ShK domain-like; This domain of is found in several C. elegans proteins. The domain is 30 ...
 112-142 1.65e-03

ShK domain-like; This domain of is found in several C. elegans proteins. The domain is 30 amino acids long and rich in cysteine residues. There are 6 conserved cysteine positions in the domain that form three disulphide bridges. The domain is found in the potassium channel inhibitor ShK in sea anemone.


:

Pssm-ID: 426319  Cd Length: 37  Bit Score: 34.29  E-value: 1.65e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 17533231   112 RSECAANKSR-CNDSVYRDMMKTQCPKTCGYC 142
Cdd:pfam01549   6 HSDCASWAALgCTSPFYQDFMKENCPKTCGFC 37
CC pfam04942
CC domain; This short domain contains four conserved cysteines that probably for two ...
 17-50 1.89e-03

CC domain; This short domain contains four conserved cysteines that probably for two disulphide bonds. The domain is named after the characteriztic CC motif.


:

Pssm-ID: 428212  Cd Length: 34  Bit Score: 34.12  E-value: 1.89e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 17533231    17 AQTTCNaiGLLGPSVGGLCPSGYTVVTSGDCCAS 50
Cdd:pfam04942   3 STLTCK--SPTGPAINGACPSGYVVVSGGRCCPK 34
 
Name Accession Description Interval E-value
ShK pfam01549
ShK domain-like; This domain of is found in several C. elegans proteins. The domain is 30 ...
 112-142 1.65e-03

ShK domain-like; This domain of is found in several C. elegans proteins. The domain is 30 amino acids long and rich in cysteine residues. There are 6 conserved cysteine positions in the domain that form three disulphide bridges. The domain is found in the potassium channel inhibitor ShK in sea anemone.


Pssm-ID: 426319  Cd Length: 37  Bit Score: 34.29  E-value: 1.65e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 17533231   112 RSECAANKSR-CNDSVYRDMMKTQCPKTCGYC 142
Cdd:pfam01549   6 HSDCASWAALgCTSPFYQDFMKENCPKTCGFC 37
CC pfam04942
CC domain; This short domain contains four conserved cysteines that probably for two ...
 17-50 1.89e-03

CC domain; This short domain contains four conserved cysteines that probably for two disulphide bonds. The domain is named after the characteriztic CC motif.


Pssm-ID: 428212  Cd Length: 34  Bit Score: 34.12  E-value: 1.89e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 17533231    17 AQTTCNaiGLLGPSVGGLCPSGYTVVTSGDCCAS 50
Cdd:pfam04942   3 STLTCK--SPTGPAINGACPSGYVVVSGGRCCPK 34
 
Name Accession Description Interval E-value
ShK pfam01549
ShK domain-like; This domain of is found in several C. elegans proteins. The domain is 30 ...
 112-142 1.65e-03

ShK domain-like; This domain of is found in several C. elegans proteins. The domain is 30 amino acids long and rich in cysteine residues. There are 6 conserved cysteine positions in the domain that form three disulphide bridges. The domain is found in the potassium channel inhibitor ShK in sea anemone.


Pssm-ID: 426319  Cd Length: 37  Bit Score: 34.29  E-value: 1.65e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 17533231   112 RSECAANKSR-CNDSVYRDMMKTQCPKTCGYC 142
Cdd:pfam01549   6 HSDCASWAALgCTSPFYQDFMKENCPKTCGFC 37
CC pfam04942
CC domain; This short domain contains four conserved cysteines that probably for two ...
 17-50 1.89e-03

CC domain; This short domain contains four conserved cysteines that probably for two disulphide bonds. The domain is named after the characteriztic CC motif.


Pssm-ID: 428212  Cd Length: 34  Bit Score: 34.12  E-value: 1.89e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 17533231    17 AQTTCNaiGLLGPSVGGLCPSGYTVVTSGDCCAS 50
Cdd:pfam04942   3 STLTCK--SPTGPAINGACPSGYVVVSGGRCCPK 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH