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Conserved domains on  [gi|17537567|ref|NP_496983|]
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Transcription elongation factor 1 homolog [Caenorhabditis elegans]

Protein Classification

transcription elongation factor 1 family protein( domain architecture ID 10523973)

transcription elongation factor 1 (ELOF1) family protein may be a transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions

Gene Ontology:  GO:0046872|GO:0008023|GO:0006368
PubMed:  16260625

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Elf1 pfam05129
Transcription elongation factor Elf1 like; This family of short proteins contains a putative ...
 2-80 1.34e-39

Transcription elongation factor Elf1 like; This family of short proteins contains a putative zinc binding domain with four conserved cysteines. Swiss:P36053 has been identified as a transcription elongation factor in Saccharomyces cerevisiae.


:

Pssm-ID: 461556  Cd Length: 77  Bit Score: 125.36  E-value: 1.34e-39
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 17537567    2 GKRKSKRKAPTKAKavMPLDTQFNCPFCNHERVCEVKMDREKNVGYISCRVCSEDFQTNINYLSEPIDVYSDWVDACEQ 80
Cdd:pfam05129  1 GKRKKKPKKKKKKK--PKLPTVFTCPFCNHEKSVSVKIDKKDGIAILSCGVCGLSFQTEINPLSEPVDVYSDWIDACEE 77
 
Name Accession Description Interval E-value
Elf1 pfam05129
Transcription elongation factor Elf1 like; This family of short proteins contains a putative ...
 2-80 1.34e-39

Transcription elongation factor Elf1 like; This family of short proteins contains a putative zinc binding domain with four conserved cysteines. Swiss:P36053 has been identified as a transcription elongation factor in Saccharomyces cerevisiae.


Pssm-ID: 461556  Cd Length: 77  Bit Score: 125.36  E-value: 1.34e-39
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 17537567    2 GKRKSKRKAPTKAKavMPLDTQFNCPFCNHERVCEVKMDREKNVGYISCRVCSEDFQTNINYLSEPIDVYSDWVDACEQ 80
Cdd:pfam05129  1 GKRKKKPKKKKKKK--PKLPTVFTCPFCNHEKSVSVKIDKKDGIAILSCGVCGLSFQTEINPLSEPVDVYSDWIDACEE 77
PRK14892 PRK14892
putative transcription elongation factor Elf1; Provisional
 1-77 3.39e-07

putative transcription elongation factor Elf1; Provisional


Pssm-ID: 184886  Cd Length: 99  Bit Score: 43.89  E-value: 3.39e-07
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 17537567   1 MGKRKSKRKAPTKAKAVMPldTQFNCPFCNHERVcEVKMdrEKNVGYISCRVCSEDFQTNINYLSEPIDVYSDWVDA 77
Cdd:PRK14892  1 MGRRRKKRKKIIRPKPKLP--KIFECPRCGKVSI-SVKI--KKNIAIITCGNCGLYTEFEVPSVYDEVDVYNKFIDL 72
 
Name Accession Description Interval E-value
Elf1 pfam05129
Transcription elongation factor Elf1 like; This family of short proteins contains a putative ...
 2-80 1.34e-39

Transcription elongation factor Elf1 like; This family of short proteins contains a putative zinc binding domain with four conserved cysteines. Swiss:P36053 has been identified as a transcription elongation factor in Saccharomyces cerevisiae.


Pssm-ID: 461556  Cd Length: 77  Bit Score: 125.36  E-value: 1.34e-39
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 17537567    2 GKRKSKRKAPTKAKavMPLDTQFNCPFCNHERVCEVKMDREKNVGYISCRVCSEDFQTNINYLSEPIDVYSDWVDACEQ 80
Cdd:pfam05129  1 GKRKKKPKKKKKKK--PKLPTVFTCPFCNHEKSVSVKIDKKDGIAILSCGVCGLSFQTEINPLSEPVDVYSDWIDACEE 77
PRK14892 PRK14892
putative transcription elongation factor Elf1; Provisional
 1-77 3.39e-07

putative transcription elongation factor Elf1; Provisional


Pssm-ID: 184886  Cd Length: 99  Bit Score: 43.89  E-value: 3.39e-07
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 17537567   1 MGKRKSKRKAPTKAKAVMPldTQFNCPFCNHERVcEVKMdrEKNVGYISCRVCSEDFQTNINYLSEPIDVYSDWVDA 77
Cdd:PRK14892  1 MGRRRKKRKKIIRPKPKLP--KIFECPRCGKVSI-SVKI--KKNIAIITCGNCGLYTEFEVPSVYDEVDVYNKFIDL 72
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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