NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|17551820|ref|NP_498234|]
View 

C3H1-type domain-containing protein [Caenorhabditis elegans]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
RRM1_RBM26_like cd12257
RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding protein 26 (RBM26) and similar ...
 365-438 1.38e-33

RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding protein 26 (RBM26) and similar proteins; This subfamily corresponds to the RRM1 of RBM26, and the RRM of RBM27. RBM26, also known as cutaneous T-cell lymphoma (CTCL) tumor antigen se70-2, represents a cutaneous lymphoma (CL)-associated antigen. It contains two RNA recognition motifs (RRMs), also known as RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The RRMs may play some functional roles in RNA-binding or protein-protein interactions. RBM27 contains only one RRM; its biological function remains unclear.


:

Pssm-ID: 409702 [Multi-domain]  Cd Length: 72  Bit Score: 123.06  E-value: 1.38e-33
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 17551820 365 NCTLQVAKIPPEMNTIAKLNEHFATFGTVDNIQVRYNGEidSALVTYASKFDAGKAYKSPTPVLNNRFIKVFWH 438
Cdd:cd12257   1 KTTLEVRNIPPELNNITKLREHFSKFGTIVNIQVNYNPE--SALVQFSTSEEANKAYRSPEAVFNNRFIKVFWH 72
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
209-233 8.34e-07

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


:

Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 45.65  E-value: 8.34e-07
                          10        20
                  ....*....|....*....|....*
gi 17551820   209 RRRCKDFEERGYCIRGDQCPYYHGR 233
Cdd:pfam00642   3 TELCRFFLRTGYCKYGDRCKFAHGQ 27
PWI super family cl47670
PWI domain;
12-77 2.58e-05

PWI domain;


The actual alignment was detected with superfamily member pfam01480:

Pssm-ID: 460224 [Multi-domain]  Cd Length: 71  Bit Score: 42.49  E-value: 2.58e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 17551820    12 WLSDELSPITDADPNALAKYVLALVKKPDKGHDELKaftnEQLNVFLTDHTAPFVDKVFEALTSKS 77
Cdd:pfam01480   6 WIEKKITEILGFEDDVVVEYVVNLLEEKFPDPKELQ----IQLTGFLDKDAAKFVKELWKLLLSAQ 67
RRM_SF super family cl17169
RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP ...
 615-676 1.66e-03

RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).


The actual alignment was detected with superfamily member cd12258:

Pssm-ID: 473069 [Multi-domain]  Cd Length: 72  Bit Score: 37.66  E-value: 1.66e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 17551820 615 VRGVTDELVTDLMAHMEKFGEVFDHSVkadDDGLITAVFPFRKTGDALKAMADGKVLNGVDL 676
Cdd:cd12258  10 VTGFTESDKDDLLPHFAQFGEVEDVQV---DEEGLHLIITFKTRKEAEIAAVHGARFKGQSL 68
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 248-323 6.64e-03

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.92  E-value: 6.64e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 17551820   248 PLPATAPNFSLPPPGYNPLNPPPPGVVVAAGEYNPEAPalnnySIPPPPIPGQWQQPHV---AAQYVPQSVSSYSQPPP 323
Cdd:PHA03247 2830 PPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPP-----SRSPAAKPAAPARPPVrrlARPAVSRSTESFALPPD 2903
 
Name Accession Description Interval E-value
RRM1_RBM26_like cd12257
RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding protein 26 (RBM26) and similar ...
 365-438 1.38e-33

RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding protein 26 (RBM26) and similar proteins; This subfamily corresponds to the RRM1 of RBM26, and the RRM of RBM27. RBM26, also known as cutaneous T-cell lymphoma (CTCL) tumor antigen se70-2, represents a cutaneous lymphoma (CL)-associated antigen. It contains two RNA recognition motifs (RRMs), also known as RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The RRMs may play some functional roles in RNA-binding or protein-protein interactions. RBM27 contains only one RRM; its biological function remains unclear.


Pssm-ID: 409702 [Multi-domain]  Cd Length: 72  Bit Score: 123.06  E-value: 1.38e-33
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 17551820 365 NCTLQVAKIPPEMNTIAKLNEHFATFGTVDNIQVRYNGEidSALVTYASKFDAGKAYKSPTPVLNNRFIKVFWH 438
Cdd:cd12257   1 KTTLEVRNIPPELNNITKLREHFSKFGTIVNIQVNYNPE--SALVQFSTSEEANKAYRSPEAVFNNRFIKVFWH 72
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
209-233 8.34e-07

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 45.65  E-value: 8.34e-07
                          10        20
                  ....*....|....*....|....*
gi 17551820   209 RRRCKDFEERGYCIRGDQCPYYHGR 233
Cdd:pfam00642   3 TELCRFFLRTGYCKYGDRCKFAHGQ 27
PWI pfam01480
PWI domain;
12-77 2.58e-05

PWI domain;


Pssm-ID: 460224 [Multi-domain]  Cd Length: 71  Bit Score: 42.49  E-value: 2.58e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 17551820    12 WLSDELSPITDADPNALAKYVLALVKKPDKGHDELKaftnEQLNVFLTDHTAPFVDKVFEALTSKS 77
Cdd:pfam01480   6 WIEKKITEILGFEDDVVVEYVVNLLEEKFPDPKELQ----IQLTGFLDKDAAKFVKELWKLLLSAQ 67
RRM smart00360
RNA recognition motif;
367-435 5.88e-05

RNA recognition motif;


Pssm-ID: 214636 [Multi-domain]  Cd Length: 73  Bit Score: 41.81  E-value: 5.88e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 17551820    367 TLQVAKIPPEMnTIAKLNEHFATFGTVDNIQVRYNGEIDS----ALVTYASKFDAGKAYKS-PTPVLNNRFIKV 435
Cdd:smart00360   1 TLFVGNLPPDT-TEEELRELFSKFGKVESVRLVRDKETGKskgfAFVEFESEEDAEKALEAlNGKELDGRPLKV 73
ZnF_C3H1 smart00356
zinc finger;
212-233 1.26e-04

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 39.53  E-value: 1.26e-04
                           10        20
                   ....*....|....*....|..
gi 17551820    212 CKDFEeRGYCIRGDQCPYYHGR 233
Cdd:smart00356   7 CKFFK-RGYCPRGDRCKFAHPL 27
RRM2_RBM26_like cd12258
RNA recognition motif 2 (RRM2) found in vertebrate RNA-binding protein 26 (RBM26) and similar ...
 615-676 1.66e-03

RNA recognition motif 2 (RRM2) found in vertebrate RNA-binding protein 26 (RBM26) and similar proteins; This subfamily corresponds to the RRM2 of RBM26, also known as cutaneous T-cell lymphoma (CTCL) tumor antigen se70-2, which represents a cutaneous lymphoma (CL)-associated antigen. RBM26 contains two RNA recognition motifs (RRMs), also known as RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The RRMs may play some functional roles in RNA-binding or protein-protein interactions.


Pssm-ID: 409703 [Multi-domain]  Cd Length: 72  Bit Score: 37.66  E-value: 1.66e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 17551820 615 VRGVTDELVTDLMAHMEKFGEVFDHSVkadDDGLITAVFPFRKTGDALKAMADGKVLNGVDL 676
Cdd:cd12258  10 VTGFTESDKDDLLPHFAQFGEVEDVQV---DEEGLHLIITFKTRKEAEIAAVHGARFKGQSL 68
PHA03247 PHA03247
large tegument protein UL36; Provisional
 248-323 6.64e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.92  E-value: 6.64e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 17551820   248 PLPATAPNFSLPPPGYNPLNPPPPGVVVAAGEYNPEAPalnnySIPPPPIPGQWQQPHV---AAQYVPQSVSSYSQPPP 323
Cdd:PHA03247 2830 PPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPP-----SRSPAAKPAAPARPPVrrlARPAVSRSTESFALPPD 2903
RRM_1 pfam00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); The RRM motif is probably diagnostic ...
 373-434 7.15e-03

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteriztic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.


Pssm-ID: 425453 [Multi-domain]  Cd Length: 70  Bit Score: 35.67  E-value: 7.15e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 17551820   373 IPPEMNTiAKLNEHFATFGTVDNIQVRYNGEIDS---ALVTYASKFDAGKAYKSptpvLNNRFIK 434
Cdd:pfam00076   6 LPPDTTE-EDLKDLFSKFGPIKSIRLVRDETGRSkgfAFVEFEDEEDAEKAIEA----LNGKELG 65
 
Name Accession Description Interval E-value
RRM1_RBM26_like cd12257
RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding protein 26 (RBM26) and similar ...
 365-438 1.38e-33

RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding protein 26 (RBM26) and similar proteins; This subfamily corresponds to the RRM1 of RBM26, and the RRM of RBM27. RBM26, also known as cutaneous T-cell lymphoma (CTCL) tumor antigen se70-2, represents a cutaneous lymphoma (CL)-associated antigen. It contains two RNA recognition motifs (RRMs), also known as RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The RRMs may play some functional roles in RNA-binding or protein-protein interactions. RBM27 contains only one RRM; its biological function remains unclear.


Pssm-ID: 409702 [Multi-domain]  Cd Length: 72  Bit Score: 123.06  E-value: 1.38e-33
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 17551820 365 NCTLQVAKIPPEMNTIAKLNEHFATFGTVDNIQVRYNGEidSALVTYASKFDAGKAYKSPTPVLNNRFIKVFWH 438
Cdd:cd12257   1 KTTLEVRNIPPELNNITKLREHFSKFGTIVNIQVNYNPE--SALVQFSTSEEANKAYRSPEAVFNNRFIKVFWH 72
RRM1_RBM26 cd12516
RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding protein 26 (RBM26); This ...
 365-438 9.59e-26

RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding protein 26 (RBM26); This subgroup corresponds to the RRM1 of RBM26, also known as cutaneous T-cell lymphoma (CTCL) tumor antigen se70-2, which represents a cutaneous lymphoma (CL)-associated antigen. It contains two RNA recognition motifs (RRMs), also known as RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The RRMs may play some functional roles in RNA-binding or protein-protein interactions.


Pssm-ID: 409938 [Multi-domain]  Cd Length: 76  Bit Score: 100.86  E-value: 9.59e-26
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 17551820 365 NCTLQVAKIPPEMNTIAKLNEHFATFGTVDNIQVRYNGEIDSALVTYASKFDAGKAYKSPTPVLNNRFIKVFWH 438
Cdd:cd12516   1 NTKLELRKVPPELNNISKLNEHFSKFGTIVNLQVAYQGDPEGALIQFATHEEAKRAISSTEAVLNNRFIKVYWH 74
RRM_RBM27 cd12517
RNA recognition motif (RRM) found in vertebrate RNA-binding protein 27 (RBM27); This subgroup ...
 365-438 7.60e-25

RNA recognition motif (RRM) found in vertebrate RNA-binding protein 27 (RBM27); This subgroup corresponds to the RRM of RBM27 which contains a single RNA recognition motif (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). Although the specific function of the RRM in RBM27 remains unclear, it shows high sequence similarity with RRM1of RBM26, which functions as a cutaneous lymphoma (CL)-associated antigen.


Pssm-ID: 409939 [Multi-domain]  Cd Length: 76  Bit Score: 98.20  E-value: 7.60e-25
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 17551820 365 NCTLQVAKIPPEMNTIAKLNEHFATFGTVDNIQVRYNGEIDSALVTYASKFDAGKAYKSPTPVLNNRFIKVFWH 438
Cdd:cd12517   1 NTKLEVRKIPQELNNITQLNEHFSKFGTIVNIQVAFGGDPEAALIQYTTNEEARRAISSTEAVLNNRFIRVLWH 74
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
209-233 8.34e-07

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 45.65  E-value: 8.34e-07
                          10        20
                  ....*....|....*....|....*
gi 17551820   209 RRRCKDFEERGYCIRGDQCPYYHGR 233
Cdd:pfam00642   3 TELCRFFLRTGYCKYGDRCKFAHGQ 27
RRM_SF cd00590
RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP ...
 368-435 1.20e-05

RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).


Pssm-ID: 409669 [Multi-domain]  Cd Length: 72  Bit Score: 43.81  E-value: 1.20e-05
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 17551820 368 LQVAKIPPEMnTIAKLNEHFATFGTVDNIQVRYNGEIDS---ALVTYASKFDAGKAYKS-PTPVLNNRFIKV 435
Cdd:cd00590   1 LFVGNLPPDT-TEEDLRELFSKFGEVVSVRIVRDRDGKSkgfAFVEFESPEDAEKALEAlNGTELGGRPLKV 71
PWI pfam01480
PWI domain;
12-77 2.58e-05

PWI domain;


Pssm-ID: 460224 [Multi-domain]  Cd Length: 71  Bit Score: 42.49  E-value: 2.58e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 17551820    12 WLSDELSPITDADPNALAKYVLALVKKPDKGHDELKaftnEQLNVFLTDHTAPFVDKVFEALTSKS 77
Cdd:pfam01480   6 WIEKKITEILGFEDDVVVEYVVNLLEEKFPDPKELQ----IQLTGFLDKDAAKFVKELWKLLLSAQ 67
RRM smart00360
RNA recognition motif;
367-435 5.88e-05

RNA recognition motif;


Pssm-ID: 214636 [Multi-domain]  Cd Length: 73  Bit Score: 41.81  E-value: 5.88e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 17551820    367 TLQVAKIPPEMnTIAKLNEHFATFGTVDNIQVRYNGEIDS----ALVTYASKFDAGKAYKS-PTPVLNNRFIKV 435
Cdd:smart00360   1 TLFVGNLPPDT-TEEELRELFSKFGKVESVRLVRDKETGKskgfAFVEFESEEDAEKALEAlNGKELDGRPLKV 73
ZnF_C3H1 smart00356
zinc finger;
212-233 1.26e-04

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 39.53  E-value: 1.26e-04
                           10        20
                   ....*....|....*....|..
gi 17551820    212 CKDFEeRGYCIRGDQCPYYHGR 233
Cdd:smart00356   7 CKFFK-RGYCPRGDRCKFAHPL 27
RRM2_RBM26_like cd12258
RNA recognition motif 2 (RRM2) found in vertebrate RNA-binding protein 26 (RBM26) and similar ...
 615-676 1.66e-03

RNA recognition motif 2 (RRM2) found in vertebrate RNA-binding protein 26 (RBM26) and similar proteins; This subfamily corresponds to the RRM2 of RBM26, also known as cutaneous T-cell lymphoma (CTCL) tumor antigen se70-2, which represents a cutaneous lymphoma (CL)-associated antigen. RBM26 contains two RNA recognition motifs (RRMs), also known as RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The RRMs may play some functional roles in RNA-binding or protein-protein interactions.


Pssm-ID: 409703 [Multi-domain]  Cd Length: 72  Bit Score: 37.66  E-value: 1.66e-03
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 17551820 615 VRGVTDELVTDLMAHMEKFGEVFDHSVkadDDGLITAVFPFRKTGDALKAMADGKVLNGVDL 676
Cdd:cd12258  10 VTGFTESDKDDLLPHFAQFGEVEDVQV---DEEGLHLIITFKTRKEAEIAAVHGARFKGQSL 68
PHA03247 PHA03247
large tegument protein UL36; Provisional
 248-323 6.64e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.92  E-value: 6.64e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 17551820   248 PLPATAPNFSLPPPGYNPLNPPPPGVVVAAGEYNPEAPalnnySIPPPPIPGQWQQPHV---AAQYVPQSVSSYSQPPP 323
Cdd:PHA03247 2830 PPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPP-----SRSPAAKPAAPARPPVrrlARPAVSRSTESFALPPD 2903
RRM_1 pfam00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); The RRM motif is probably diagnostic ...
 373-434 7.15e-03

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteriztic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.


Pssm-ID: 425453 [Multi-domain]  Cd Length: 70  Bit Score: 35.67  E-value: 7.15e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 17551820   373 IPPEMNTiAKLNEHFATFGTVDNIQVRYNGEIDS---ALVTYASKFDAGKAYKSptpvLNNRFIK 434
Cdd:pfam00076   6 LPPDTTE-EDLKDLFSKFGPIKSIRLVRDETGRSkgfAFVEFEDEEDAEKAIEA----LNGKELG 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH