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Conserved domains on  [gi|17554362|ref|NP_498598|]
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Major sperm protein [Caenorhabditis elegans]

Protein Classification

motile sperm domain-containing protein( domain architecture ID 10457611)

motile sperm domain-containing protein may form filaments, similar to major motile sperm protein (MSP) and vesicle-associated membrane protein-associated proteins

CATH:  2.60.40.10
SCOP:  4007566

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Motile_Sperm pfam00635
MSP (Major sperm protein) domain; Major sperm proteins are involved in sperm motility. These ...
 303-400 2.98e-16

MSP (Major sperm protein) domain; Major sperm proteins are involved in sperm motility. These proteins oligomerise to form filaments. This family contains many other proteins.


:

Pssm-ID: 459882  Cd Length: 109  Bit Score: 74.32  E-value: 2.98e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17554362   303 ISVSSNKVFISP---KKEQKCQLTIKNDGEVNVVYQISIMNAANYVMSPICAILLPKEELTLNITRKPGKLLEEE----F 375
Cdd:pfam00635   2 LTIDPPDLIFFAapgNKQGTSTLTLKNTSDKRVAFKVKTTNPKKYRVRPNYGIIKPGESVTITITRQPFDEEPGDakkdK 81

                          90       100
                  ....*....|....*....|....*
gi 17554362   376 FRIDYGVAPEGIIDARDSSDRAEFT 400
Cdd:pfam00635  82 FVIQYAVAPGDEKDAKEAFKRAWKT 106
PLN03209 super family cl25752
translocon at the inner envelope of chloroplast subunit 62; Provisional
 62-173 9.99e-03

translocon at the inner envelope of chloroplast subunit 62; Provisional


The actual alignment was detected with superfamily member PLN03209:

Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 37.98  E-value: 9.99e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17554362   62 SPKTSPAktTTTTTTVVTQKVSNQPTAPISTLPPRKPTAQKSRELSP------PKAKKSPSPSRTGSGDSGSRKESSASR 135
Cdd:PLN03209 329 PPKESDA--ADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPytayedLKPPTSPIPTPPSSSPASSKSVDAVAK 406

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 17554362  136 KDSSKTEKLVKDLENVklekgDSRESATLPTPKQYPAS 173
Cdd:PLN03209 407 PAEPDVVPSPGSASNV-----PEVEPAQVEAKKTRPLS 439
 
Name Accession Description Interval E-value
Motile_Sperm pfam00635
MSP (Major sperm protein) domain; Major sperm proteins are involved in sperm motility. These ...
 303-400 2.98e-16

MSP (Major sperm protein) domain; Major sperm proteins are involved in sperm motility. These proteins oligomerise to form filaments. This family contains many other proteins.


Pssm-ID: 459882  Cd Length: 109  Bit Score: 74.32  E-value: 2.98e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17554362   303 ISVSSNKVFISP---KKEQKCQLTIKNDGEVNVVYQISIMNAANYVMSPICAILLPKEELTLNITRKPGKLLEEE----F 375
Cdd:pfam00635   2 LTIDPPDLIFFAapgNKQGTSTLTLKNTSDKRVAFKVKTTNPKKYRVRPNYGIIKPGESVTITITRQPFDEEPGDakkdK 81

                          90       100
                  ....*....|....*....|....*
gi 17554362   376 FRIDYGVAPEGIIDARDSSDRAEFT 400
Cdd:pfam00635  82 FVIQYAVAPGDEKDAKEAFKRAWKT 106
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 62-173 9.99e-03

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 37.98  E-value: 9.99e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17554362   62 SPKTSPAktTTTTTTVVTQKVSNQPTAPISTLPPRKPTAQKSRELSP------PKAKKSPSPSRTGSGDSGSRKESSASR 135
Cdd:PLN03209 329 PPKESDA--ADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPytayedLKPPTSPIPTPPSSSPASSKSVDAVAK 406

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 17554362  136 KDSSKTEKLVKDLENVklekgDSRESATLPTPKQYPAS 173
Cdd:PLN03209 407 PAEPDVVPSPGSASNV-----PEVEPAQVEAKKTRPLS 439
 
Name Accession Description Interval E-value
Motile_Sperm pfam00635
MSP (Major sperm protein) domain; Major sperm proteins are involved in sperm motility. These ...
 303-400 2.98e-16

MSP (Major sperm protein) domain; Major sperm proteins are involved in sperm motility. These proteins oligomerise to form filaments. This family contains many other proteins.


Pssm-ID: 459882  Cd Length: 109  Bit Score: 74.32  E-value: 2.98e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17554362   303 ISVSSNKVFISP---KKEQKCQLTIKNDGEVNVVYQISIMNAANYVMSPICAILLPKEELTLNITRKPGKLLEEE----F 375
Cdd:pfam00635   2 LTIDPPDLIFFAapgNKQGTSTLTLKNTSDKRVAFKVKTTNPKKYRVRPNYGIIKPGESVTITITRQPFDEEPGDakkdK 81

                          90       100
                  ....*....|....*....|....*
gi 17554362   376 FRIDYGVAPEGIIDARDSSDRAEFT 400
Cdd:pfam00635  82 FVIQYAVAPGDEKDAKEAFKRAWKT 106
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
 62-173 9.99e-03

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 37.98  E-value: 9.99e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17554362   62 SPKTSPAktTTTTTTVVTQKVSNQPTAPISTLPPRKPTAQKSRELSP------PKAKKSPSPSRTGSGDSGSRKESSASR 135
Cdd:PLN03209 329 PPKESDA--ADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPytayedLKPPTSPIPTPPSSSPASSKSVDAVAK 406

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 17554362  136 KDSSKTEKLVKDLENVklekgDSRESATLPTPKQYPAS 173
Cdd:PLN03209 407 PAEPDVVPSPGSASNV-----PEVEPAQVEAKKTRPLS 439
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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