|
Name |
Accession |
Description |
Interval |
E-value |
| CLH |
smart00299 |
Clathrin heavy chain repeat homology; |
1276-1418 |
1.05e-37 |
|
Clathrin heavy chain repeat homology;
:
Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 138.56 E-value: 1.05e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 1276 LHIVVHADELEELINFYQDRGHFEELIALLEAALGLERAHMGMFTELAILYSKYKPEKMREHLELFWSRVNIPKVLRAAE 1355
Cdd:smart00299 1 LLEVSDPIDVSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYDPQKEIERLDNKSNHYDIEKVGKLCE 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 17555172 1356 QAHLWSELVFLYDKYEEYDNAALTMMQHPTESwreQHFKEVIAKVANVELYYKAMQFYLDYKP 1418
Cdd:smart00299 81 KAKLYEEAVELYKKDGNFKDAIVTLIEHLGNY---EKAIEYFVKQNNPELWAEVLKALLDKPR 140
|
|
| CLH |
smart00299 |
Clathrin heavy chain repeat homology; |
981-1121 |
2.44e-32 |
|
Clathrin heavy chain repeat homology;
:
Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 123.15 E-value: 2.44e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 981 LSETQDPEDISVTVKAFMAADLPNELIELLEKIVLDNSafsEHRNLQNLLILTAMRADRTRVMEYIQ-KLDNYDAPDIAN 1059
Cdd:smart00299 1 LLEVSDPIDVSEVVELFEKRNLLEELIPYLESALKLNS---ENPALQTKLIELYAKYDPQKEIERLDnKSNHYDIEKVGK 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 17555172 1060 IAITSELYEEAFAIFKKFDVNSSAINVLIENVNNLDRAYEFAEKCNQSDVWASLAKAQLQQN 1121
Cdd:smart00299 78 LCEKAKLYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVKQNNPELWAEVLKALLDKP 139
|
|
| Clathrin |
pfam00637 |
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
1429-1563 |
1.16e-28 |
|
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain.
:
Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 112.73 E-value: 1.16e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 1429 SPRLDHSRTVLFFNKLKQIPLVKPYLRQVQNL---NNKAINEALNQLLIDEEDHAGLRSSIEAQDNFDNITLAQQLEKHP 1505
Cdd:pfam00637 5 TDPIDVSRVVKLFEKAGLLEELISYLESALKEdsrENPALQTALIELYAKYDDPEELEEFLKKNNNYDLEKVAKLCEKAD 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 17555172 1506 LVEFRRisaYLFKGNNRWKQSIELCKKDKLYKDAMEYAAESRNGELAEELLSFFLDEK 1563
Cdd:pfam00637 85 LYEEAV---ILYKKIGNWKEAISLLKKLGDYKDAIEYAVKSSNPELWEELLEALLDNG 139
|
|
| Clathrin |
pfam00637 |
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
835-972 |
7.05e-27 |
|
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain.
:
Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 107.73 E-value: 7.05e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 835 IINTRGKFDIDELVEEVEKRNRLKLLNHWLESKIQEGATD-AATHNAMAKIYIDSN--NNPERFLKENPYYDSKVVGKYC 911
Cdd:pfam00637 1 LIESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDSREnPALQTALIELYAKYDdpEELEEFLKKNNNYDLEKVAKLC 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 17555172 912 EKRDPH-YAFLSYERGQCDAELINVCNENSLFKNLARYLVKRRDFTLWEQVLNEENVHRRQL 972
Cdd:pfam00637 81 EKADLYeEAVILYKKIGNWKEAISLLKKLGDYKDAIEYAVKSSNPELWEELLEALLDNGRFE 142
|
|
| Clathrin_H_link |
pfam13838 |
Clathrin-H-link; This short domain is found on clathrins, and often appears on proteins ... |
354-419 |
1.45e-26 |
|
Clathrin-H-link; This short domain is found on clathrins, and often appears on proteins directly downstream from the Clathrin-link domain pfam09268.
:
Pssm-ID: 463995 Cd Length: 66 Bit Score: 103.83 E-value: 1.45e-26
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 17555172 354 DLPGAEELFVRKFNLLFSNGQFGESAKVAASAPQGILRTPATIQKFQQCPSTGPGPSPLLQYFGIL 419
Cdd:pfam13838 1 GLPGADDLYFQQFNQLLNQGDYAEAAKVAANSPRGALRTPETIQRFKQLPAQPGQLSPILQYFGTL 66
|
|
| Clathrin |
pfam00637 |
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
1130-1269 |
6.93e-26 |
|
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain.
:
Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 104.65 E-value: 6.93e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 1130 FIKADDPGAYMEVVNKCSQTEHWEDLVRYLQMARKKSRE--SYIETELVFALAKTGRLTELEEFIAGPNHAQIGQIGDRC 1207
Cdd:pfam00637 1 LIESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDSRenPALQTALIELYAKYDDPEELEEFLKKNNNYDLEKVAKLC 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 17555172 1208 FDNGMFDSAKILFNNVSNFAKLSVTLVRLGEYQGAVDAARKANSTKTWKQVCFSCVENGEFR 1269
Cdd:pfam00637 81 EKADLYEEAVILYKKIGNWKEAISLLKKLGDYKDAIEYAVKSSNPELWEELLEALLDNGRFE 142
|
|
| CLH |
smart00299 |
Clathrin heavy chain repeat homology; |
688-826 |
6.97e-26 |
|
Clathrin heavy chain repeat homology;
:
Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 104.66 E-value: 6.97e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 688 ASKYHEQLGADKLIEMFENHKSYEGLFYFLGSIVNF-SQDPEVHFKYIQAATRTGQIKEVERICRESQCYDAERVKNFLK 766
Cdd:smart00299 1 LLEVSDPIDVSEVVELFEKRNLLEELIPYLESALKLnSENPALQTKLIELYAKYDPQKEIERLDNKSNHYDIEKVGKLCE 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 17555172 767 EAKLNDQLPLIIVCDrHNMVHDLVLYLYR-NQLQKYIEVFVQKVNAARLPIVVGALLDVDC 826
Cdd:smart00299 81 KAKLYEEAVELYKKD-GNFKDAIVTLIEHlGNYEKAIEYFVKQNNPELWAEVLKALLDKPR 140
|
|
| CLH |
smart00299 |
Clathrin heavy chain repeat homology; |
543-673 |
2.29e-20 |
|
Clathrin heavy chain repeat homology;
:
Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 88.87 E-value: 2.29e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 543 EPLADLSQIIDCFMEVQAVQPCTSFLLEVLKGDkPEEGHLQTRLLEMNLLAAPAVADAILANkMFSHYDRAAIGQLCEKA 622
Cdd:smart00299 5 SDPIDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDPQKEIERLDN-KSNHYDIEKVGKLCEKA 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 17555172 623 GLLQRALEHFTDLYDIKRTVVHT--HLLKPDWLVGYFGS-LSVEDSVECLKAML 673
Cdd:smart00299 83 KLYEEAVELYKKDGNFKDAIVTLieHLGNYEKAIEYFVKqNNPELWAEVLKALL 136
|
|
| Clathrin-link |
pfam09268 |
Clathrin, heavy-chain linker; Members of this family adopt a structure consisting of ... |
329-352 |
3.05e-08 |
|
Clathrin, heavy-chain linker; Members of this family adopt a structure consisting of alpha-alpha superhelix. They are predominantly found in clathrin, where they act as a heavy-chain linker domain.
:
Pssm-ID: 462732 Cd Length: 24 Bit Score: 50.52 E-value: 3.05e-08
|
| Clathrin_propel |
pfam01394 |
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that ... |
196-232 |
1.37e-04 |
|
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that surrounds coated vesicles. The soluble assembly unit, a triskelion, contains three heavy chains and three light chains in an extended three-legged structure. Each leg contains one heavy and one light chain. The N-terminus of the heavy chain is known as the globular domain, and is composed of seven repeats which form a beta propeller.
:
Pssm-ID: 460192 Cd Length: 37 Bit Score: 40.48 E-value: 1.37e-04
10 20 30
....*....|....*....|....*....|....*..
gi 17555172 196 AACFVRFKVDGNQNPSNLFCFSVKTDNGGKLHVIEVG 232
Cdd:pfam01394 1 NAISAIIIFPTATMESWLFIIAINGTKKGQVQIVDVE 37
|
|
| Clathrin_propel |
pfam01394 |
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that ... |
257-286 |
1.59e-04 |
|
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that surrounds coated vesicles. The soluble assembly unit, a triskelion, contains three heavy chains and three light chains in an extended three-legged structure. Each leg contains one heavy and one light chain. The N-terminus of the heavy chain is known as the globular domain, and is composed of seven repeats which form a beta propeller.
:
Pssm-ID: 460192 Cd Length: 37 Bit Score: 40.48 E-value: 1.59e-04
10 20 30
....*....|....*....|....*....|
gi 17555172 257 DFPVSMQVSAKQGIIYLVTKQGYVHLYDVE 286
Cdd:pfam01394 8 IFPTATMESWLFIIAINGTKKGQVQIVDVE 37
|
|
| Clathrin_propel |
pfam01394 |
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that ... |
146-185 |
7.66e-04 |
|
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that surrounds coated vesicles. The soluble assembly unit, a triskelion, contains three heavy chains and three light chains in an extended three-legged structure. Each leg contains one heavy and one light chain. The N-terminus of the heavy chain is known as the globular domain, and is composed of seven repeats which form a beta propeller.
:
Pssm-ID: 460192 Cd Length: 37 Bit Score: 38.55 E-value: 7.66e-04
10 20 30 40
....*....|....*....|....*....|....*....|
gi 17555172 146 LAGTQIINYRADAENKWLVLIGISakdSRVVGSMQLYSTE 185
Cdd:pfam01394 1 NAISAIIIFPTATMESWLFIIAIN---GTKKGQVQIVDVE 37
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| CLH |
smart00299 |
Clathrin heavy chain repeat homology; |
1276-1418 |
1.05e-37 |
|
Clathrin heavy chain repeat homology;
Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 138.56 E-value: 1.05e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 1276 LHIVVHADELEELINFYQDRGHFEELIALLEAALGLERAHMGMFTELAILYSKYKPEKMREHLELFWSRVNIPKVLRAAE 1355
Cdd:smart00299 1 LLEVSDPIDVSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYDPQKEIERLDNKSNHYDIEKVGKLCE 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 17555172 1356 QAHLWSELVFLYDKYEEYDNAALTMMQHPTESwreQHFKEVIAKVANVELYYKAMQFYLDYKP 1418
Cdd:smart00299 81 KAKLYEEAVELYKKDGNFKDAIVTLIEHLGNY---EKAIEYFVKQNNPELWAEVLKALLDKPR 140
|
|
| CLH |
smart00299 |
Clathrin heavy chain repeat homology; |
981-1121 |
2.44e-32 |
|
Clathrin heavy chain repeat homology;
Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 123.15 E-value: 2.44e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 981 LSETQDPEDISVTVKAFMAADLPNELIELLEKIVLDNSafsEHRNLQNLLILTAMRADRTRVMEYIQ-KLDNYDAPDIAN 1059
Cdd:smart00299 1 LLEVSDPIDVSEVVELFEKRNLLEELIPYLESALKLNS---ENPALQTKLIELYAKYDPQKEIERLDnKSNHYDIEKVGK 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 17555172 1060 IAITSELYEEAFAIFKKFDVNSSAINVLIENVNNLDRAYEFAEKCNQSDVWASLAKAQLQQN 1121
Cdd:smart00299 78 LCEKAKLYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVKQNNPELWAEVLKALLDKP 139
|
|
| Clathrin |
pfam00637 |
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
981-1121 |
4.51e-30 |
|
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain.
Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 116.59 E-value: 4.51e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 981 LSETQDPEDISVTVKAFMAADLPNELIELLEKIVLDNSAfsEHRNLQNLLILTAMRADR-TRVMEYIQKLDNYDAPDIAN 1059
Cdd:pfam00637 1 LIESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDSR--ENPALQTALIELYAKYDDpEELEEFLKKNNNYDLEKVAK 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 17555172 1060 IAITSELYEEAFAIFKKFDVNSSAINVLIENvNNLDRAYEFAEKCNQSDVWASLAKAQLQQN 1121
Cdd:pfam00637 79 LCEKADLYEEAVILYKKIGNWKEAISLLKKL-GDYKDAIEYAVKSSNPELWEELLEALLDNG 139
|
|
| Clathrin |
pfam00637 |
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
1276-1418 |
1.05e-28 |
|
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain.
Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 112.73 E-value: 1.05e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 1276 LHIVVHADELEELINFYQDRGHFEELIALLEAALGL-ERAHMGMFTELAILYSKY-KPEKMREHLELFWSrVNIPKVLRA 1353
Cdd:pfam00637 1 LIESTDPIDVSRVVKLFEKAGLLEELISYLESALKEdSRENPALQTALIELYAKYdDPEELEEFLKKNNN-YDLEKVAKL 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 17555172 1354 AEQAHLWSELVFLYDKYEEYDNAAltMMQHPTESWREQHfkEVIAKVANVELYYKAMQFYLDYKP 1418
Cdd:pfam00637 80 CEKADLYEEAVILYKKIGNWKEAI--SLLKKLGDYKDAI--EYAVKSSNPELWEELLEALLDNGR 140
|
|
| Clathrin |
pfam00637 |
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
1429-1563 |
1.16e-28 |
|
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain.
Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 112.73 E-value: 1.16e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 1429 SPRLDHSRTVLFFNKLKQIPLVKPYLRQVQNL---NNKAINEALNQLLIDEEDHAGLRSSIEAQDNFDNITLAQQLEKHP 1505
Cdd:pfam00637 5 TDPIDVSRVVKLFEKAGLLEELISYLESALKEdsrENPALQTALIELYAKYDDPEELEEFLKKNNNYDLEKVAKLCEKAD 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 17555172 1506 LVEFRRisaYLFKGNNRWKQSIELCKKDKLYKDAMEYAAESRNGELAEELLSFFLDEK 1563
Cdd:pfam00637 85 LYEEAV---ILYKKIGNWKEAISLLKKLGDYKDAIEYAVKSSNPELWEELLEALLDNG 139
|
|
| Clathrin |
pfam00637 |
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
835-972 |
7.05e-27 |
|
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain.
Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 107.73 E-value: 7.05e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 835 IINTRGKFDIDELVEEVEKRNRLKLLNHWLESKIQEGATD-AATHNAMAKIYIDSN--NNPERFLKENPYYDSKVVGKYC 911
Cdd:pfam00637 1 LIESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDSREnPALQTALIELYAKYDdpEELEEFLKKNNNYDLEKVAKLC 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 17555172 912 EKRDPH-YAFLSYERGQCDAELINVCNENSLFKNLARYLVKRRDFTLWEQVLNEENVHRRQL 972
Cdd:pfam00637 81 EKADLYeEAVILYKKIGNWKEAISLLKKLGDYKDAIEYAVKSSNPELWEELLEALLDNGRFE 142
|
|
| Clathrin_H_link |
pfam13838 |
Clathrin-H-link; This short domain is found on clathrins, and often appears on proteins ... |
354-419 |
1.45e-26 |
|
Clathrin-H-link; This short domain is found on clathrins, and often appears on proteins directly downstream from the Clathrin-link domain pfam09268.
Pssm-ID: 463995 Cd Length: 66 Bit Score: 103.83 E-value: 1.45e-26
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 17555172 354 DLPGAEELFVRKFNLLFSNGQFGESAKVAASAPQGILRTPATIQKFQQCPSTGPGPSPLLQYFGIL 419
Cdd:pfam13838 1 GLPGADDLYFQQFNQLLNQGDYAEAAKVAANSPRGALRTPETIQRFKQLPAQPGQLSPILQYFGTL 66
|
|
| Clathrin |
pfam00637 |
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
1130-1269 |
6.93e-26 |
|
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain.
Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 104.65 E-value: 6.93e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 1130 FIKADDPGAYMEVVNKCSQTEHWEDLVRYLQMARKKSRE--SYIETELVFALAKTGRLTELEEFIAGPNHAQIGQIGDRC 1207
Cdd:pfam00637 1 LIESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDSRenPALQTALIELYAKYDDPEELEEFLKKNNNYDLEKVAKLC 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 17555172 1208 FDNGMFDSAKILFNNVSNFAKLSVTLVRLGEYQGAVDAARKANSTKTWKQVCFSCVENGEFR 1269
Cdd:pfam00637 81 EKADLYEEAVILYKKIGNWKEAISLLKKLGDYKDAIEYAVKSSNPELWEELLEALLDNGRFE 142
|
|
| CLH |
smart00299 |
Clathrin heavy chain repeat homology; |
688-826 |
6.97e-26 |
|
Clathrin heavy chain repeat homology;
Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 104.66 E-value: 6.97e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 688 ASKYHEQLGADKLIEMFENHKSYEGLFYFLGSIVNF-SQDPEVHFKYIQAATRTGQIKEVERICRESQCYDAERVKNFLK 766
Cdd:smart00299 1 LLEVSDPIDVSEVVELFEKRNLLEELIPYLESALKLnSENPALQTKLIELYAKYDPQKEIERLDNKSNHYDIEKVGKLCE 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 17555172 767 EAKLNDQLPLIIVCDrHNMVHDLVLYLYR-NQLQKYIEVFVQKVNAARLPIVVGALLDVDC 826
Cdd:smart00299 81 KAKLYEEAVELYKKD-GNFKDAIVTLIEHlGNYEKAIEYFVKQNNPELWAEVLKALLDKPR 140
|
|
| CLH |
smart00299 |
Clathrin heavy chain repeat homology; |
835-970 |
4.04e-24 |
|
Clathrin heavy chain repeat homology;
Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 99.66 E-value: 4.04e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 835 IINTRGKFDIDELVEEVEKRNRLKLLNHWLESKIQEGATDAATHNAMAKIYIDSNNNP--ERFLKENPYYDSKVVGKYCE 912
Cdd:smart00299 1 LLEVSDPIDVSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYDPQKeiERLDNKSNHYDIEKVGKLCE 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 913 KRDPHY-AFLSYERGQCDAELINVCNENS-LFKNLARYLVKRRDFTLWEQVLNEENVHRR 970
Cdd:smart00299 81 KAKLYEeAVELYKKDGNFKDAIVTLIEHLgNYEKAIEYFVKQNNPELWAEVLKALLDKPR 140
|
|
| Clathrin |
pfam00637 |
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
690-828 |
7.76e-24 |
|
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain.
Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 98.87 E-value: 7.76e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 690 KYHEQLGADKLIEMFENHKSYEGLFYFLGSIVNFS--QDPEVHFKYIQAATRTGQIKEVERICRESQCYDAERVKNFLKE 767
Cdd:pfam00637 3 ESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDsrENPALQTALIELYAKYDDPEELEEFLKKNNNYDLEKVAKLCEK 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 17555172 768 AKLNDQLPLIIVCdrHNMVHDLV-LYLYRNQLQKYIEVFVQKVNAARLPIVVGALLDVDCSE 828
Cdd:pfam00637 83 ADLYEEAVILYKK--IGNWKEAIsLLKKLGDYKDAIEYAVKSSNPELWEELLEALLDNGRFE 142
|
|
| CLH |
smart00299 |
Clathrin heavy chain repeat homology; |
1130-1267 |
2.16e-20 |
|
Clathrin heavy chain repeat homology;
Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 88.87 E-value: 2.16e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 1130 FIKADDPGAYMEVVNKCSQTEHWEDLVRYLQMARKKSRE-SYIETELVFALAKTGRLTELEEFIAGPNHAQIGQIGDRCF 1208
Cdd:smart00299 1 LLEVSDPIDVSEVVELFEKRNLLEELIPYLESALKLNSEnPALQTKLIELYAKYDPQKEIERLDNKSNHYDIEKVGKLCE 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 1209 DNGMFDSAKILFNNVSNFAKLSVTLV-RLGEYQGAVDAARKANSTKTWKQVCFSCVENGE 1267
Cdd:smart00299 81 KAKLYEEAVELYKKDGNFKDAIVTLIeHLGNYEKAIEYFVKQNNPELWAEVLKALLDKPR 140
|
|
| CLH |
smart00299 |
Clathrin heavy chain repeat homology; |
543-673 |
2.29e-20 |
|
Clathrin heavy chain repeat homology;
Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 88.87 E-value: 2.29e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 543 EPLADLSQIIDCFMEVQAVQPCTSFLLEVLKGDkPEEGHLQTRLLEMNLLAAPAVADAILANkMFSHYDRAAIGQLCEKA 622
Cdd:smart00299 5 SDPIDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDPQKEIERLDN-KSNHYDIEKVGKLCEKA 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 17555172 623 GLLQRALEHFTDLYDIKRTVVHT--HLLKPDWLVGYFGS-LSVEDSVECLKAML 673
Cdd:smart00299 83 KLYEEAVELYKKDGNFKDAIVTLieHLGNYEKAIEYFVKqNNPELWAEVLKALL 136
|
|
| Clathrin |
pfam00637 |
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
543-680 |
2.04e-18 |
|
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain.
Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 83.46 E-value: 2.04e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 543 EPLADLSQIIDCFMEVQAVQPCTSFLLEVLKGDKPEEGHLQTRLLEMNL-LAAPAVADAILanKMFSHYDRAAIGQLCEK 621
Cdd:pfam00637 5 TDPIDVSRVVKLFEKAGLLEELISYLESALKEDSRENPALQTALIELYAkYDDPEELEEFL--KKNNNYDLEKVAKLCEK 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 622 AGLLQRALEHFTDLYDIKR-TVVHTHLLKPDWLVGYFGSLSVEDSVECLKAMLTQNIRQN 680
Cdd:pfam00637 83 ADLYEEAVILYKKIGNWKEaISLLKKLGDYKDAIEYAVKSSNPELWEELLEALLDNGRFE 142
|
|
| CLH |
smart00299 |
Clathrin heavy chain repeat homology; |
1429-1579 |
1.38e-15 |
|
Clathrin heavy chain repeat homology;
Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 75.39 E-value: 1.38e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 1429 SPRLDHSRTVLFFNKLKQIPLVKPYLRQVQNLNNKaiNEALNQLLIDEEDHAGLRSSIEAQDNFdnitlaqqlekHPLVE 1508
Cdd:smart00299 5 SDPIDVSEVVELFEKRNLLEELIPYLESALKLNSE--NPALQTKLIELYAKYDPQKEIERLDNK-----------SNHYD 71
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 17555172 1509 FRRISAYLFKGNNrWKQSIELCKKDKLYKDAMEYAAESRNgeLAEELLSFFLDEKLYDCFAASLYHCYDLL 1579
Cdd:smart00299 72 IEKVGKLCEKAKL-YEEAVELYKKDGNFKDAIVTLIEHLG--NYEKAIEYFVKQNNPELWAEVLKALLDKP 139
|
|
| Clathrin-link |
pfam09268 |
Clathrin, heavy-chain linker; Members of this family adopt a structure consisting of ... |
329-352 |
3.05e-08 |
|
Clathrin, heavy-chain linker; Members of this family adopt a structure consisting of alpha-alpha superhelix. They are predominantly found in clathrin, where they act as a heavy-chain linker domain.
Pssm-ID: 462732 Cd Length: 24 Bit Score: 50.52 E-value: 3.05e-08
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
996-1221 |
8.29e-05 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 46.26 E-value: 8.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 996 AFMAADLPNELIELLEKIVLDNSAFSE-HRNLQNLLiltAMRADRTRVMEYIQKL-----DNYDA-PDIANIAITSELYE 1068
Cdd:COG2956 17 NYLLNGQPDKAIDLLEEALELDPETVEaHLALGNLY---RRRGEYDRAIRIHQKLlerdpDRAEAlLELAQDYLKAGLLD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 1069 EAFAIFKKF-DVNSSAINVLI------ENVNNLDRAYEFAEKC-----NQSDVWASLAKAQLQQNLVKEAVDSFIKA--- 1133
Cdd:COG2956 94 RAEELLEKLlELDPDDAEALRllaeiyEQEGDWEKAIEVLERLlklgpENAHAYCELAELYLEQGDYDEAIEALEKAlkl 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 1134 --DDPGAYMEVVNKCSQTEHWEDLVRYLQMARKKSRESY-IETELVFALAKTGRLTELEEFI-----AGPNHAQIGQIGD 1205
Cdd:COG2956 174 dpDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLpALPRLAELYEKLGDPEEALELLrkaleLDPSDDLLLALAD 253
|
250
....*....|....*.
gi 17555172 1206 RCFDNGMFDSAKILFN 1221
Cdd:COG2956 254 LLERKEGLEAALALLE 269
|
|
| Clathrin_propel |
pfam01394 |
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that ... |
196-232 |
1.37e-04 |
|
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that surrounds coated vesicles. The soluble assembly unit, a triskelion, contains three heavy chains and three light chains in an extended three-legged structure. Each leg contains one heavy and one light chain. The N-terminus of the heavy chain is known as the globular domain, and is composed of seven repeats which form a beta propeller.
Pssm-ID: 460192 Cd Length: 37 Bit Score: 40.48 E-value: 1.37e-04
10 20 30
....*....|....*....|....*....|....*..
gi 17555172 196 AACFVRFKVDGNQNPSNLFCFSVKTDNGGKLHVIEVG 232
Cdd:pfam01394 1 NAISAIIIFPTATMESWLFIIAINGTKKGQVQIVDVE 37
|
|
| Clathrin_propel |
pfam01394 |
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that ... |
257-286 |
1.59e-04 |
|
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that surrounds coated vesicles. The soluble assembly unit, a triskelion, contains three heavy chains and three light chains in an extended three-legged structure. Each leg contains one heavy and one light chain. The N-terminus of the heavy chain is known as the globular domain, and is composed of seven repeats which form a beta propeller.
Pssm-ID: 460192 Cd Length: 37 Bit Score: 40.48 E-value: 1.59e-04
10 20 30
....*....|....*....|....*....|
gi 17555172 257 DFPVSMQVSAKQGIIYLVTKQGYVHLYDVE 286
Cdd:pfam01394 8 IFPTATMESWLFIIAINGTKKGQVQIVDVE 37
|
|
| Clathrin_propel |
pfam01394 |
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that ... |
146-185 |
7.66e-04 |
|
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that surrounds coated vesicles. The soluble assembly unit, a triskelion, contains three heavy chains and three light chains in an extended three-legged structure. Each leg contains one heavy and one light chain. The N-terminus of the heavy chain is known as the globular domain, and is composed of seven repeats which form a beta propeller.
Pssm-ID: 460192 Cd Length: 37 Bit Score: 38.55 E-value: 7.66e-04
10 20 30 40
....*....|....*....|....*....|....*....|
gi 17555172 146 LAGTQIINYRADAENKWLVLIGISakdSRVVGSMQLYSTE 185
Cdd:pfam01394 1 NAISAIIIFPTATMESWLFIIAIN---GTKKGQVQIVDVE 37
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1110-1339 |
2.60e-03 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 41.64 E-value: 2.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 1110 WASLAKAQLQQNLVKEAVDSFIKA-----DDPGAYMEVVNKCSQTEHWEDLVRYLQMARKKSRESYietELVFALA---- 1180
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEAleldpETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRA---EALLELAqdyl 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 1181 KTGRLTE----LEEFIA-GPNHAQIG-QIGDRCFDNGMFDSAKILFNNVSNFAK--------LSVTLVRLGEYQGAVDAA 1246
Cdd:COG2956 88 KAGLLDRaeelLEKLLElDPDDAEALrLLAEIYEQEGDWEKAIEVLERLLKLGPenahayceLAELYLEQGDYDEAIEAL 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 1247 RKA-----NSTKTWKQVCFSCVENGEFRLAQMCGLHIVVHADE----LEELINFYQDRGHFEELIALLEAALGLERAHMG 1317
Cdd:COG2956 168 EKAlkldpDCARALLLLAELYLEQGDYEEAIAALERALEQDPDylpaLPRLAELYEKLGDPEEALELLRKALELDPSDDL 247
|
250 260
....*....|....*....|..
gi 17555172 1318 MFTELAILYSKYKPEKMREHLE 1339
Cdd:COG2956 248 LLALADLLERKEGLEAALALLE 269
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| CLH |
smart00299 |
Clathrin heavy chain repeat homology; |
1276-1418 |
1.05e-37 |
|
Clathrin heavy chain repeat homology;
Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 138.56 E-value: 1.05e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 1276 LHIVVHADELEELINFYQDRGHFEELIALLEAALGLERAHMGMFTELAILYSKYKPEKMREHLELFWSRVNIPKVLRAAE 1355
Cdd:smart00299 1 LLEVSDPIDVSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYDPQKEIERLDNKSNHYDIEKVGKLCE 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 17555172 1356 QAHLWSELVFLYDKYEEYDNAALTMMQHPTESwreQHFKEVIAKVANVELYYKAMQFYLDYKP 1418
Cdd:smart00299 81 KAKLYEEAVELYKKDGNFKDAIVTLIEHLGNY---EKAIEYFVKQNNPELWAEVLKALLDKPR 140
|
|
| CLH |
smart00299 |
Clathrin heavy chain repeat homology; |
981-1121 |
2.44e-32 |
|
Clathrin heavy chain repeat homology;
Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 123.15 E-value: 2.44e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 981 LSETQDPEDISVTVKAFMAADLPNELIELLEKIVLDNSafsEHRNLQNLLILTAMRADRTRVMEYIQ-KLDNYDAPDIAN 1059
Cdd:smart00299 1 LLEVSDPIDVSEVVELFEKRNLLEELIPYLESALKLNS---ENPALQTKLIELYAKYDPQKEIERLDnKSNHYDIEKVGK 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 17555172 1060 IAITSELYEEAFAIFKKFDVNSSAINVLIENVNNLDRAYEFAEKCNQSDVWASLAKAQLQQN 1121
Cdd:smart00299 78 LCEKAKLYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVKQNNPELWAEVLKALLDKP 139
|
|
| Clathrin |
pfam00637 |
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
981-1121 |
4.51e-30 |
|
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain.
Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 116.59 E-value: 4.51e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 981 LSETQDPEDISVTVKAFMAADLPNELIELLEKIVLDNSAfsEHRNLQNLLILTAMRADR-TRVMEYIQKLDNYDAPDIAN 1059
Cdd:pfam00637 1 LIESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDSR--ENPALQTALIELYAKYDDpEELEEFLKKNNNYDLEKVAK 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 17555172 1060 IAITSELYEEAFAIFKKFDVNSSAINVLIENvNNLDRAYEFAEKCNQSDVWASLAKAQLQQN 1121
Cdd:pfam00637 79 LCEKADLYEEAVILYKKIGNWKEAISLLKKL-GDYKDAIEYAVKSSNPELWEELLEALLDNG 139
|
|
| Clathrin |
pfam00637 |
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
1276-1418 |
1.05e-28 |
|
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain.
Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 112.73 E-value: 1.05e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 1276 LHIVVHADELEELINFYQDRGHFEELIALLEAALGL-ERAHMGMFTELAILYSKY-KPEKMREHLELFWSrVNIPKVLRA 1353
Cdd:pfam00637 1 LIESTDPIDVSRVVKLFEKAGLLEELISYLESALKEdSRENPALQTALIELYAKYdDPEELEEFLKKNNN-YDLEKVAKL 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 17555172 1354 AEQAHLWSELVFLYDKYEEYDNAAltMMQHPTESWREQHfkEVIAKVANVELYYKAMQFYLDYKP 1418
Cdd:pfam00637 80 CEKADLYEEAVILYKKIGNWKEAI--SLLKKLGDYKDAI--EYAVKSSNPELWEELLEALLDNGR 140
|
|
| Clathrin |
pfam00637 |
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
1429-1563 |
1.16e-28 |
|
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain.
Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 112.73 E-value: 1.16e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 1429 SPRLDHSRTVLFFNKLKQIPLVKPYLRQVQNL---NNKAINEALNQLLIDEEDHAGLRSSIEAQDNFDNITLAQQLEKHP 1505
Cdd:pfam00637 5 TDPIDVSRVVKLFEKAGLLEELISYLESALKEdsrENPALQTALIELYAKYDDPEELEEFLKKNNNYDLEKVAKLCEKAD 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 17555172 1506 LVEFRRisaYLFKGNNRWKQSIELCKKDKLYKDAMEYAAESRNGELAEELLSFFLDEK 1563
Cdd:pfam00637 85 LYEEAV---ILYKKIGNWKEAISLLKKLGDYKDAIEYAVKSSNPELWEELLEALLDNG 139
|
|
| Clathrin |
pfam00637 |
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
835-972 |
7.05e-27 |
|
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain.
Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 107.73 E-value: 7.05e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 835 IINTRGKFDIDELVEEVEKRNRLKLLNHWLESKIQEGATD-AATHNAMAKIYIDSN--NNPERFLKENPYYDSKVVGKYC 911
Cdd:pfam00637 1 LIESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDSREnPALQTALIELYAKYDdpEELEEFLKKNNNYDLEKVAKLC 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 17555172 912 EKRDPH-YAFLSYERGQCDAELINVCNENSLFKNLARYLVKRRDFTLWEQVLNEENVHRRQL 972
Cdd:pfam00637 81 EKADLYeEAVILYKKIGNWKEAISLLKKLGDYKDAIEYAVKSSNPELWEELLEALLDNGRFE 142
|
|
| Clathrin_H_link |
pfam13838 |
Clathrin-H-link; This short domain is found on clathrins, and often appears on proteins ... |
354-419 |
1.45e-26 |
|
Clathrin-H-link; This short domain is found on clathrins, and often appears on proteins directly downstream from the Clathrin-link domain pfam09268.
Pssm-ID: 463995 Cd Length: 66 Bit Score: 103.83 E-value: 1.45e-26
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 17555172 354 DLPGAEELFVRKFNLLFSNGQFGESAKVAASAPQGILRTPATIQKFQQCPSTGPGPSPLLQYFGIL 419
Cdd:pfam13838 1 GLPGADDLYFQQFNQLLNQGDYAEAAKVAANSPRGALRTPETIQRFKQLPAQPGQLSPILQYFGTL 66
|
|
| Clathrin |
pfam00637 |
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
1130-1269 |
6.93e-26 |
|
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain.
Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 104.65 E-value: 6.93e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 1130 FIKADDPGAYMEVVNKCSQTEHWEDLVRYLQMARKKSRE--SYIETELVFALAKTGRLTELEEFIAGPNHAQIGQIGDRC 1207
Cdd:pfam00637 1 LIESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDSRenPALQTALIELYAKYDDPEELEEFLKKNNNYDLEKVAKLC 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 17555172 1208 FDNGMFDSAKILFNNVSNFAKLSVTLVRLGEYQGAVDAARKANSTKTWKQVCFSCVENGEFR 1269
Cdd:pfam00637 81 EKADLYEEAVILYKKIGNWKEAISLLKKLGDYKDAIEYAVKSSNPELWEELLEALLDNGRFE 142
|
|
| CLH |
smart00299 |
Clathrin heavy chain repeat homology; |
688-826 |
6.97e-26 |
|
Clathrin heavy chain repeat homology;
Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 104.66 E-value: 6.97e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 688 ASKYHEQLGADKLIEMFENHKSYEGLFYFLGSIVNF-SQDPEVHFKYIQAATRTGQIKEVERICRESQCYDAERVKNFLK 766
Cdd:smart00299 1 LLEVSDPIDVSEVVELFEKRNLLEELIPYLESALKLnSENPALQTKLIELYAKYDPQKEIERLDNKSNHYDIEKVGKLCE 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 17555172 767 EAKLNDQLPLIIVCDrHNMVHDLVLYLYR-NQLQKYIEVFVQKVNAARLPIVVGALLDVDC 826
Cdd:smart00299 81 KAKLYEEAVELYKKD-GNFKDAIVTLIEHlGNYEKAIEYFVKQNNPELWAEVLKALLDKPR 140
|
|
| CLH |
smart00299 |
Clathrin heavy chain repeat homology; |
835-970 |
4.04e-24 |
|
Clathrin heavy chain repeat homology;
Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 99.66 E-value: 4.04e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 835 IINTRGKFDIDELVEEVEKRNRLKLLNHWLESKIQEGATDAATHNAMAKIYIDSNNNP--ERFLKENPYYDSKVVGKYCE 912
Cdd:smart00299 1 LLEVSDPIDVSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYDPQKeiERLDNKSNHYDIEKVGKLCE 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 913 KRDPHY-AFLSYERGQCDAELINVCNENS-LFKNLARYLVKRRDFTLWEQVLNEENVHRR 970
Cdd:smart00299 81 KAKLYEeAVELYKKDGNFKDAIVTLIEHLgNYEKAIEYFVKQNNPELWAEVLKALLDKPR 140
|
|
| Clathrin |
pfam00637 |
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
690-828 |
7.76e-24 |
|
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain.
Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 98.87 E-value: 7.76e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 690 KYHEQLGADKLIEMFENHKSYEGLFYFLGSIVNFS--QDPEVHFKYIQAATRTGQIKEVERICRESQCYDAERVKNFLKE 767
Cdd:pfam00637 3 ESTDPIDVSRVVKLFEKAGLLEELISYLESALKEDsrENPALQTALIELYAKYDDPEELEEFLKKNNNYDLEKVAKLCEK 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 17555172 768 AKLNDQLPLIIVCdrHNMVHDLV-LYLYRNQLQKYIEVFVQKVNAARLPIVVGALLDVDCSE 828
Cdd:pfam00637 83 ADLYEEAVILYKK--IGNWKEAIsLLKKLGDYKDAIEYAVKSSNPELWEELLEALLDNGRFE 142
|
|
| CLH |
smart00299 |
Clathrin heavy chain repeat homology; |
1130-1267 |
2.16e-20 |
|
Clathrin heavy chain repeat homology;
Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 88.87 E-value: 2.16e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 1130 FIKADDPGAYMEVVNKCSQTEHWEDLVRYLQMARKKSRE-SYIETELVFALAKTGRLTELEEFIAGPNHAQIGQIGDRCF 1208
Cdd:smart00299 1 LLEVSDPIDVSEVVELFEKRNLLEELIPYLESALKLNSEnPALQTKLIELYAKYDPQKEIERLDNKSNHYDIEKVGKLCE 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 1209 DNGMFDSAKILFNNVSNFAKLSVTLV-RLGEYQGAVDAARKANSTKTWKQVCFSCVENGE 1267
Cdd:smart00299 81 KAKLYEEAVELYKKDGNFKDAIVTLIeHLGNYEKAIEYFVKQNNPELWAEVLKALLDKPR 140
|
|
| CLH |
smart00299 |
Clathrin heavy chain repeat homology; |
543-673 |
2.29e-20 |
|
Clathrin heavy chain repeat homology;
Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 88.87 E-value: 2.29e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 543 EPLADLSQIIDCFMEVQAVQPCTSFLLEVLKGDkPEEGHLQTRLLEMNLLAAPAVADAILANkMFSHYDRAAIGQLCEKA 622
Cdd:smart00299 5 SDPIDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDPQKEIERLDN-KSNHYDIEKVGKLCEKA 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 17555172 623 GLLQRALEHFTDLYDIKRTVVHT--HLLKPDWLVGYFGS-LSVEDSVECLKAML 673
Cdd:smart00299 83 KLYEEAVELYKKDGNFKDAIVTLieHLGNYEKAIEYFVKqNNPELWAEVLKALL 136
|
|
| Clathrin |
pfam00637 |
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are ... |
543-680 |
2.04e-18 |
|
Region in Clathrin and VPS; Each region is about 140 amino acids long. The regions are composed of multiple alpha helical repeats. They occur in the arm region of the Clathrin heavy chain.
Pssm-ID: 459884 [Multi-domain] Cd Length: 142 Bit Score: 83.46 E-value: 2.04e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 543 EPLADLSQIIDCFMEVQAVQPCTSFLLEVLKGDKPEEGHLQTRLLEMNL-LAAPAVADAILanKMFSHYDRAAIGQLCEK 621
Cdd:pfam00637 5 TDPIDVSRVVKLFEKAGLLEELISYLESALKEDSRENPALQTALIELYAkYDDPEELEEFL--KKNNNYDLEKVAKLCEK 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 622 AGLLQRALEHFTDLYDIKR-TVVHTHLLKPDWLVGYFGSLSVEDSVECLKAMLTQNIRQN 680
Cdd:pfam00637 83 ADLYEEAVILYKKIGNWKEaISLLKKLGDYKDAIEYAVKSSNPELWEELLEALLDNGRFE 142
|
|
| CLH |
smart00299 |
Clathrin heavy chain repeat homology; |
1429-1579 |
1.38e-15 |
|
Clathrin heavy chain repeat homology;
Pssm-ID: 128594 [Multi-domain] Cd Length: 140 Bit Score: 75.39 E-value: 1.38e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 1429 SPRLDHSRTVLFFNKLKQIPLVKPYLRQVQNLNNKaiNEALNQLLIDEEDHAGLRSSIEAQDNFdnitlaqqlekHPLVE 1508
Cdd:smart00299 5 SDPIDVSEVVELFEKRNLLEELIPYLESALKLNSE--NPALQTKLIELYAKYDPQKEIERLDNK-----------SNHYD 71
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 17555172 1509 FRRISAYLFKGNNrWKQSIELCKKDKLYKDAMEYAAESRNgeLAEELLSFFLDEKLYDCFAASLYHCYDLL 1579
Cdd:smart00299 72 IEKVGKLCEKAKL-YEEAVELYKKDGNFKDAIVTLIEHLG--NYEKAIEYFVKQNNPELWAEVLKALLDKP 139
|
|
| Clathrin-link |
pfam09268 |
Clathrin, heavy-chain linker; Members of this family adopt a structure consisting of ... |
329-352 |
3.05e-08 |
|
Clathrin, heavy-chain linker; Members of this family adopt a structure consisting of alpha-alpha superhelix. They are predominantly found in clathrin, where they act as a heavy-chain linker domain.
Pssm-ID: 462732 Cd Length: 24 Bit Score: 50.52 E-value: 3.05e-08
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
996-1221 |
8.29e-05 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 46.26 E-value: 8.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 996 AFMAADLPNELIELLEKIVLDNSAFSE-HRNLQNLLiltAMRADRTRVMEYIQKL-----DNYDA-PDIANIAITSELYE 1068
Cdd:COG2956 17 NYLLNGQPDKAIDLLEEALELDPETVEaHLALGNLY---RRRGEYDRAIRIHQKLlerdpDRAEAlLELAQDYLKAGLLD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 1069 EAFAIFKKF-DVNSSAINVLI------ENVNNLDRAYEFAEKC-----NQSDVWASLAKAQLQQNLVKEAVDSFIKA--- 1133
Cdd:COG2956 94 RAEELLEKLlELDPDDAEALRllaeiyEQEGDWEKAIEVLERLlklgpENAHAYCELAELYLEQGDYDEAIEALEKAlkl 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 1134 --DDPGAYMEVVNKCSQTEHWEDLVRYLQMARKKSRESY-IETELVFALAKTGRLTELEEFI-----AGPNHAQIGQIGD 1205
Cdd:COG2956 174 dpDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLpALPRLAELYEKLGDPEEALELLrkaleLDPSDDLLLALAD 253
|
250
....*....|....*.
gi 17555172 1206 RCFDNGMFDSAKILFN 1221
Cdd:COG2956 254 LLERKEGLEAALALLE 269
|
|
| Clathrin_propel |
pfam01394 |
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that ... |
196-232 |
1.37e-04 |
|
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that surrounds coated vesicles. The soluble assembly unit, a triskelion, contains three heavy chains and three light chains in an extended three-legged structure. Each leg contains one heavy and one light chain. The N-terminus of the heavy chain is known as the globular domain, and is composed of seven repeats which form a beta propeller.
Pssm-ID: 460192 Cd Length: 37 Bit Score: 40.48 E-value: 1.37e-04
10 20 30
....*....|....*....|....*....|....*..
gi 17555172 196 AACFVRFKVDGNQNPSNLFCFSVKTDNGGKLHVIEVG 232
Cdd:pfam01394 1 NAISAIIIFPTATMESWLFIIAINGTKKGQVQIVDVE 37
|
|
| Clathrin_propel |
pfam01394 |
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that ... |
257-286 |
1.59e-04 |
|
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that surrounds coated vesicles. The soluble assembly unit, a triskelion, contains three heavy chains and three light chains in an extended three-legged structure. Each leg contains one heavy and one light chain. The N-terminus of the heavy chain is known as the globular domain, and is composed of seven repeats which form a beta propeller.
Pssm-ID: 460192 Cd Length: 37 Bit Score: 40.48 E-value: 1.59e-04
10 20 30
....*....|....*....|....*....|
gi 17555172 257 DFPVSMQVSAKQGIIYLVTKQGYVHLYDVE 286
Cdd:pfam01394 8 IFPTATMESWLFIIAINGTKKGQVQIVDVE 37
|
|
| Clathrin_propel |
pfam01394 |
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that ... |
146-185 |
7.66e-04 |
|
Clathrin propeller repeat; Clathrin is the scaffold protein of the basket-like coat that surrounds coated vesicles. The soluble assembly unit, a triskelion, contains three heavy chains and three light chains in an extended three-legged structure. Each leg contains one heavy and one light chain. The N-terminus of the heavy chain is known as the globular domain, and is composed of seven repeats which form a beta propeller.
Pssm-ID: 460192 Cd Length: 37 Bit Score: 38.55 E-value: 7.66e-04
10 20 30 40
....*....|....*....|....*....|....*....|
gi 17555172 146 LAGTQIINYRADAENKWLVLIGISakdSRVVGSMQLYSTE 185
Cdd:pfam01394 1 NAISAIIIFPTATMESWLFIIAIN---GTKKGQVQIVDVE 37
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1110-1339 |
2.60e-03 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 41.64 E-value: 2.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 1110 WASLAKAQLQQNLVKEAVDSFIKA-----DDPGAYMEVVNKCSQTEHWEDLVRYLQMARKKSRESYietELVFALA---- 1180
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEAleldpETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRA---EALLELAqdyl 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 1181 KTGRLTE----LEEFIA-GPNHAQIG-QIGDRCFDNGMFDSAKILFNNVSNFAK--------LSVTLVRLGEYQGAVDAA 1246
Cdd:COG2956 88 KAGLLDRaeelLEKLLElDPDDAEALrLLAEIYEQEGDWEKAIEVLERLLKLGPenahayceLAELYLEQGDYDEAIEAL 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17555172 1247 RKA-----NSTKTWKQVCFSCVENGEFRLAQMCGLHIVVHADE----LEELINFYQDRGHFEELIALLEAALGLERAHMG 1317
Cdd:COG2956 168 EKAlkldpDCARALLLLAELYLEQGDYEEAIAALERALEQDPDylpaLPRLAELYEKLGDPEEALELLRKALELDPSDDL 247
|
250 260
....*....|....*....|..
gi 17555172 1318 MFTELAILYSKYKPEKMREHLE 1339
Cdd:COG2956 248 LLALADLLERKEGLEAALALLE 269
|
|
| |
