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Conserved domains on  [gi|25149553|ref|NP_501030|]
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Protein kinase domain-containing protein [Caenorhabditis elegans]

Protein Classification

protein kinase family protein( domain architecture ID 229378)

protein kinase family protein may catalyze the transfer of the gamma-phosphoryl group from ATP to substrates such as serine/threonine and/or tyrosine residues on proteins, or may be a pseudokinase

CATH:  1.10.510.10
PubMed:  16244704
SCOP:  4003661

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PKc_like super family cl21453
Protein Kinases, catalytic domain; The protein kinase superfamily is mainly composed of the ...
166-364 9.73e-08

Protein Kinases, catalytic domain; The protein kinase superfamily is mainly composed of the catalytic domains of serine/threonine-specific and tyrosine-specific protein kinases. It also includes RIO kinases, which are atypical serine protein kinases, aminoglycoside phosphotransferases, and choline kinases. These proteins catalyze the transfer of the gamma-phosphoryl group from ATP to hydroxyl groups in specific substrates such as serine, threonine, or tyrosine residues of proteins.


The actual alignment was detected with superfamily member smart00220:

Pssm-ID: 473864 [Multi-domain]  Cd Length: 254  Bit Score: 52.92  E-value: 9.73e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25149553    166 KVEKLGQGNHGTIFKVRWN--GRRAAMKVLHVPGEIS-ADTAKDEITVMKKVgsavfrkKNPSFLEFLGAYLVEGHsktd 242
Cdd:smart00220   3 ILEKLGEGSFGKVYLARDKktGKLVAIKVIKKKKIKKdRERILREIKILKKL-------KHPNIVRLYDVFEDEDK---- 71
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25149553    243 pklqfknknghplpekaqfVAIFMELVEGG------RSIGDFPfktDNERKSFVCQLVVGLMTAQKeLGFSHGDLSVDNt 316
Cdd:smart00220  72 -------------------LYLVMEYCEGGdlfdllKKRGRLS---EDEARFYLRQILSALEYLHS-KGIVHRDLKPEN- 127
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*...
gi 25149553    317 ivtktklrtvayILegkavkLKTSGVlLKIIDYGKSECSSDNKASTSF 364
Cdd:smart00220 128 ------------IL------LDEDGH-VKLADFGLARQLDPGEKLTTF 156
 
Name Accession Description Interval E-value
S_TKc smart00220
Serine/Threonine protein kinases, catalytic domain; Phosphotransferases. Serine or ...
166-364 9.73e-08

Serine/Threonine protein kinases, catalytic domain; Phosphotransferases. Serine or threonine-specific kinase subfamily.


Pssm-ID: 214567 [Multi-domain]  Cd Length: 254  Bit Score: 52.92  E-value: 9.73e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25149553    166 KVEKLGQGNHGTIFKVRWN--GRRAAMKVLHVPGEIS-ADTAKDEITVMKKVgsavfrkKNPSFLEFLGAYLVEGHsktd 242
Cdd:smart00220   3 ILEKLGEGSFGKVYLARDKktGKLVAIKVIKKKKIKKdRERILREIKILKKL-------KHPNIVRLYDVFEDEDK---- 71
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25149553    243 pklqfknknghplpekaqfVAIFMELVEGG------RSIGDFPfktDNERKSFVCQLVVGLMTAQKeLGFSHGDLSVDNt 316
Cdd:smart00220  72 -------------------LYLVMEYCEGGdlfdllKKRGRLS---EDEARFYLRQILSALEYLHS-KGIVHRDLKPEN- 127
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*...
gi 25149553    317 ivtktklrtvayILegkavkLKTSGVlLKIIDYGKSECSSDNKASTSF 364
Cdd:smart00220 128 ------------IL------LDEDGH-VKLADFGLARQLDPGEKLTTF 156
STKc_MST1_2 cd06612
Catalytic domain of the Serine/Threonine Kinases, Mammalian STe20-like protein kinase 1 and 2; ...
167-238 8.19e-06

Catalytic domain of the Serine/Threonine Kinases, Mammalian STe20-like protein kinase 1 and 2; STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 and MEKK1 by acting as a MAPK kinase kinase kinase. Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.


Pssm-ID: 132943 [Multi-domain]  Cd Length: 256  Bit Score: 46.88  E-value: 8.19e-06
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 25149553 167 VEKLGQGNHGTIFKVRW--NGRRAAMKVLHVPGEISAdtAKDEITVMKKVgsavfrkKNPSFLEFLGAYLVEGH 238
Cdd:cd06612   8 LEKLGEGSYGSVYKAIHkeTGQVVAIKVVPVEEDLQE--IIKEISILKQC-------DSPYIVKYYGSYFKNTD 72
 
Name Accession Description Interval E-value
S_TKc smart00220
Serine/Threonine protein kinases, catalytic domain; Phosphotransferases. Serine or ...
166-364 9.73e-08

Serine/Threonine protein kinases, catalytic domain; Phosphotransferases. Serine or threonine-specific kinase subfamily.


Pssm-ID: 214567 [Multi-domain]  Cd Length: 254  Bit Score: 52.92  E-value: 9.73e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25149553    166 KVEKLGQGNHGTIFKVRWN--GRRAAMKVLHVPGEIS-ADTAKDEITVMKKVgsavfrkKNPSFLEFLGAYLVEGHsktd 242
Cdd:smart00220   3 ILEKLGEGSFGKVYLARDKktGKLVAIKVIKKKKIKKdRERILREIKILKKL-------KHPNIVRLYDVFEDEDK---- 71
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25149553    243 pklqfknknghplpekaqfVAIFMELVEGG------RSIGDFPfktDNERKSFVCQLVVGLMTAQKeLGFSHGDLSVDNt 316
Cdd:smart00220  72 -------------------LYLVMEYCEGGdlfdllKKRGRLS---EDEARFYLRQILSALEYLHS-KGIVHRDLKPEN- 127
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*...
gi 25149553    317 ivtktklrtvayILegkavkLKTSGVlLKIIDYGKSECSSDNKASTSF 364
Cdd:smart00220 128 ------------IL------LDEDGH-VKLADFGLARQLDPGEKLTTF 156
STKc_MST1_2 cd06612
Catalytic domain of the Serine/Threonine Kinases, Mammalian STe20-like protein kinase 1 and 2; ...
167-238 8.19e-06

Catalytic domain of the Serine/Threonine Kinases, Mammalian STe20-like protein kinase 1 and 2; STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 and MEKK1 by acting as a MAPK kinase kinase kinase. Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.


Pssm-ID: 132943 [Multi-domain]  Cd Length: 256  Bit Score: 46.88  E-value: 8.19e-06
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 25149553 167 VEKLGQGNHGTIFKVRW--NGRRAAMKVLHVPGEISAdtAKDEITVMKKVgsavfrkKNPSFLEFLGAYLVEGH 238
Cdd:cd06612   8 LEKLGEGSYGSVYKAIHkeTGQVVAIKVVPVEEDLQE--IIKEISILKQC-------DSPYIVKYYGSYFKNTD 72
STKc_PAK2 cd06655
Catalytic domain of the Serine/Threonine Kinase, p21-activated kinase 2; STKs catalyze the ...
166-235 2.48e-03

Catalytic domain of the Serine/Threonine Kinase, p21-activated kinase 2; STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. It belongs to the group I PAKs, which contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.


Pssm-ID: 132986 [Multi-domain]  Cd Length: 296  Bit Score: 39.71  E-value: 2.48e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 25149553 166 KVEKLGQGNHGTIFKVR--WNGRRAAMKVLHVPGEISADTAKDEITVMKKVgsavfrkKNPSFLEFLGAYLV 235
Cdd:cd06655  23 RYEKIGQGASGTVFTAIdvATGQEVAIKQINLQKQPKKELIINEILVMKEL-------KNPNIVNFLDSFLV 87
PTKc_Src_like cd05034
Catalytic domain of Src kinase-like Protein Tyrosine Kinases; PTKs catalyze the transfer of ...
168-214 2.49e-03

Catalytic domain of Src kinase-like Protein Tyrosine Kinases; PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. Src (or c-Src) proteins are cytoplasmic (or non-receptor) PTKs which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. The Src-like subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.


Pssm-ID: 270630 [Multi-domain]  Cd Length: 248  Bit Score: 39.19  E-value: 2.49e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*...
gi 25149553 168 EKLGQGNHGTIFKVRWNGR-RAAMKVLHvPGEISADTAKDEITVMKKV 214
Cdd:cd05034   1 KKLGAGQFGEVWMGVWNGTtKVAVKTLK-PGTMSPEAFLQEAQIMKKL 47
STKc_MLCK cd14103
Catalytic domain of the Serine/Threonine Kinase, Myosin Light Chain Kinase; STKs catalyze the ...
170-350 5.72e-03

Catalytic domain of the Serine/Threonine Kinase, Myosin Light Chain Kinase; STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. MLCK phosphorylates myosin regulatory light chain and controls the contraction of all muscle types. In vertebrates, different MLCKs function in smooth (MLCK1), skeletal (MLCK2), and cardiac (MLCK3) muscles. A fourth protein, MLCK4, has also been identified through comprehensive genome analysis although it has not been biochemically characterized. The MLCK1 gene expresses three transcripts in a cell-specific manner: a short MLCK1 which contains three immunoglobulin (Ig)-like and one fibronectin type III (FN3) domains, PEVK and actin-binding regions, and a kinase domain near the C-terminus; a long MLCK1 containing six additional Ig-like domains at the N-terminus compared to the short MLCK1; and the C-terminal Ig module. MLCK2, MLCK3, and MLCK4 share a simpler domain architecture of a single kinase domain near the C-terminus and the absence of Ig-like or FN3 domains. The MLCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.


Pssm-ID: 271005 [Multi-domain]  Cd Length: 250  Bit Score: 38.36  E-value: 5.72e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25149553 170 LGQGNHGTIFKV--RWNGRRAAMKVLHVPGEISADTAKDEITVMKKVgsavfrkKNPSFLEFLGAYlveghsktdpklqf 247
Cdd:cd14103   1 LGRGKFGTVYRCveKATGKELAAKFIKCRKAKDREDVRNEIEIMNQL-------RHPRLLQLYDAF-------------- 59
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 25149553 248 knknghplpEKAQFVAIFMELVEGG----RSIGDFPFKTDNERKSFVCQLVVGL--MTAQKELgfsHGDLSVDNTIVtkt 321
Cdd:cd14103  60 ---------ETPREMVLVMEYVAGGelfeRVVDDDFELTERDCILFMRQICEGVqyMHKQGIL---HLDLKPENILC--- 124
                       170       180
                ....*....|....*....|....*....
gi 25149553 322 klrtvayilegkavkLKTSGVLLKIIDYG 350
Cdd:cd14103 125 ---------------VSRTGNQIKIIDFG 138
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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