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Conserved domains on  [gi|17542344|ref|NP_501176|]
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GP-PDE domain-containing protein [Caenorhabditis elegans]

Protein Classification

glycerophosphodiester phosphodiesterase family protein( domain architecture ID 10171153)

glycerophosphodiester phosphodiesterase (GDPD) family protein similar to Homo sapiens glycerophosphodiester phosphodiesterase 1 (GDE1) that hydrolyzes the phosphodiester bond of glycerophosphodiesters such as glycerophosphoinositol (GroPIns) and glycerophosphoethanolamine (GroPEth), to yield a glycerol phosphate and an alcohol

EC:  3.1.4.-
Gene Ontology:  GO:0008081|GO:0006629

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GDPD_GDE1 cd08573
Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester ...
 65-329 1.68e-131

Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G protein-coupled receptor (GPCR) signaling. In addition, GDE1 may interact with PRA1 domain family, member 2 (PRAF2, also known as JM4), which is an interacting protein of the G protein-coupled chemokine receptor CCR5. The catalytic activity, which is dependent on the integrity of the GDPD domain, is required for GDE1 cellular function.


:

Pssm-ID: 176515 [Multi-domain]  Cd Length: 258  Bit Score: 376.21  E-value: 1.68e-131
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344  65 IGGHRGAPKSFPENSMAGFAQAKADGADLIEFDVALTKDGKAVLMHDDDLDRTTDMKGPIrdktrAELDRCDISATFKRT 144
Cdd:cd08573   1 IIGHRGAGHDAPENTLAAFRQAKKNGADGVEFDLEFTKDGVPVLMHDDTVDRTTDGTGLV-----AELTWEELRKLNAAA 75

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344 145 APGDHCRlatVSRERVPDMEDVVKWAVENNTRMLFDVKDSDNELVDQIANLFQKYN-LYDKAIVCSFFPWVVYRIKKGDQ 223
Cdd:cd08573  76 KHRLSSR---FPGEKIPTLEEAVKECLENNLRMIFDVKSNSSKLVDALKNLFKKYPgLYDKAIVCSFNPIVIYKVRKADP 152

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344 224 KILTGLTWRLKFWSYHDIENIRPRYSGPKQMLFEMIDVAHVWLLKKVTPWYLGADLLLTNNLDISQALIMDQRRRGMRVA 303
Cdd:cd08573 153 KILTGLTWRPWFLSYTDDEGGPRRKSGWKHFLYSMLDVILEWSLHSWLPYFLGVSALLIHKDDISSAYVRYWRARGIRVI 232

                       250       260
                ....*....|....*....|....*.
gi 17542344 304 VWTVNDMAEMHWMLKTLNIPILTDYP 329
Cdd:cd08573 233 AWTVNTPTEKQYFAKTLNVPYITDSL 258
 
Name Accession Description Interval E-value
GDPD_GDE1 cd08573
Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester ...
 65-329 1.68e-131

Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G protein-coupled receptor (GPCR) signaling. In addition, GDE1 may interact with PRA1 domain family, member 2 (PRAF2, also known as JM4), which is an interacting protein of the G protein-coupled chemokine receptor CCR5. The catalytic activity, which is dependent on the integrity of the GDPD domain, is required for GDE1 cellular function.


Pssm-ID: 176515 [Multi-domain]  Cd Length: 258  Bit Score: 376.21  E-value: 1.68e-131
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344  65 IGGHRGAPKSFPENSMAGFAQAKADGADLIEFDVALTKDGKAVLMHDDDLDRTTDMKGPIrdktrAELDRCDISATFKRT 144
Cdd:cd08573   1 IIGHRGAGHDAPENTLAAFRQAKKNGADGVEFDLEFTKDGVPVLMHDDTVDRTTDGTGLV-----AELTWEELRKLNAAA 75

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344 145 APGDHCRlatVSRERVPDMEDVVKWAVENNTRMLFDVKDSDNELVDQIANLFQKYN-LYDKAIVCSFFPWVVYRIKKGDQ 223
Cdd:cd08573  76 KHRLSSR---FPGEKIPTLEEAVKECLENNLRMIFDVKSNSSKLVDALKNLFKKYPgLYDKAIVCSFNPIVIYKVRKADP 152

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344 224 KILTGLTWRLKFWSYHDIENIRPRYSGPKQMLFEMIDVAHVWLLKKVTPWYLGADLLLTNNLDISQALIMDQRRRGMRVA 303
Cdd:cd08573 153 KILTGLTWRPWFLSYTDDEGGPRRKSGWKHFLYSMLDVILEWSLHSWLPYFLGVSALLIHKDDISSAYVRYWRARGIRVI 232

                       250       260
                ....*....|....*....|....*.
gi 17542344 304 VWTVNDMAEMHWMLKTLNIPILTDYP 329
Cdd:cd08573 233 AWTVNTPTEKQYFAKTLNVPYITDSL 258
GDPD pfam03009
Glycerophosphoryl diester phosphodiesterase family; E. coli has two sequence related isozymes ...
 68-331 3.08e-67

Glycerophosphoryl diester phosphodiesterase family; E. coli has two sequence related isozymes of glycerophosphoryl diester phosphodiesterase (GDPD) - periplasmic and cytosolic. This family also includes agrocinopine synthase, the similarity to GDPD has been noted. This family appears to have weak but not significant matches to mammalian phospholipase C pfam00388, which suggests that this family may adopt a TIM barrel fold.


Pssm-ID: 397241 [Multi-domain]  Cd Length: 244  Bit Score: 211.88  E-value: 3.08e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344    68 HRGAPKSFPENSMAGFAQAKADGADLIEFDVALTKDGKAVLMHDDDLDRTTDMKGPIRDKTRAELDRCDISATFKRTAPG 147
Cdd:pfam03009   1 HRGASGSYPENTLASFRKAAEAGADYIEFDVQLTKDGVPVVLHDFNLDRTTDGAGYVRDLTLEELKRLDIGAGNSGPLSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344   148 DHCrlatvsreRVPDMEDVVKWavenntrmLFDVKDSDNELVDQIANLFQKYN-LYDKAIVCSFFPWVVYrikKGDQKIL 226
Cdd:pfam03009  81 ERV--------PFPTLEEVLEF--------DWDVGFNIEIKIKPYVEAIAPEEgLIVKDLLLSVDEILAK---KADPRRV 141

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344   227 TGLTWRLKFWSYHDIENirPRYsgPKQMLFEMIDVAHVWlLKKVTPWYLGADLLLTNN---LDISQALIMDQRRRGMRVA 303
Cdd:pfam03009 142 IFSSFNPDELKRLRELA--PKL--PLVFLSSGRAYAEAD-LLERAAAFAGAPALLGEValvDEALPDLVKRAHARGLVVH 216

                         250       260
                  ....*....|....*....|....*...
gi 17542344   304 VWTVNDMAEMHWMLKTLNIPILTDYPEL 331
Cdd:pfam03009 217 VWTVNNEDEMKRLLELGVDGVITDRPDT 244
UgpQ COG0584
Glycerophosphoryl diester phosphodiesterase [Lipid transport and metabolism];
61-335 1.46e-54

Glycerophosphoryl diester phosphodiesterase [Lipid transport and metabolism];


Pssm-ID: 440349 [Multi-domain]  Cd Length: 238  Bit Score: 178.91  E-value: 1.46e-54
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344  61 SGFKIGGHRGAPKSFPENSMAGFAQAKADGADLIEFDVALTKDGKAVLMHDDDLDRTTDMKGPIRDKTRAELDRCDISAT 140
Cdd:COG0584   1 PRPLIIAHRGASGLAPENTLAAFRAALELGADGIELDVQLTKDGVLVVFHDPTLDRTTNGTGRVADLTLAELRQLDAGSG 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344 141 fkrtapgdhcrlATVSRERVPDMEDVVKWaVENNTRMLFDVKDSDN---ELVDQIANLFQKYNLYDKAIVCSFFPWVVYR 217
Cdd:COG0584  81 ------------PDFAGERIPTLEEVLEL-VPGDVGLNIEIKSPPAaepDLAEAVAALLKRYGLEDRVIVSSFDPEALRR 147

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344 218 IKKGDQKILTGLtwrlkfwsyhdienirprysgpkqmLFEMIDVAHVWLLKKVTPWYLGADLLLtnnldISQALIMDQRR 297
Cdd:COG0584 148 LRELAPDVPLGL-------------------------LVEELPADPLELARALGADGVGPDYDL-----LTPELVAAAHA 197

                       250       260       270
                ....*....|....*....|....*....|....*....
gi 17542344 298 RGMRVAVWTVNDMAEMHWMLKT-LNIpILTDYPELTTQA 335
Cdd:COG0584 198 AGLKVHVWTVNDPEEMRRLLDLgVDG-IITDRPDLLRAV 235
ugpQ PRK09454
cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
 68-173 5.98e-18

cytoplasmic glycerophosphodiester phosphodiesterase; Provisional


Pssm-ID: 236524 [Multi-domain]  Cd Length: 249  Bit Score: 81.91  E-value: 5.98e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344   68 HRGAPKSFPENSMAGFAQAKADGADLIEFDVALTKDGKAVLMHDDDLDRTTDMKGPIRDKTRAELDRCDISATFKRTAPG 147
Cdd:PRK09454  13 HRGGGKLAPENTLAAIDVGARYGHRMIEFDAKLSADGEIFLLHDDTLERTSNGWGVAGELTWQDLAQLDAGSWFSAAFAG 92

                         90       100
                 ....*....|....*....|....*.
gi 17542344  148 dhcrlatvsrERVPDMEDVVKWAVEN 173
Cdd:PRK09454  93 ----------EPLPTLSQVAARCRAH 108
 
Name Accession Description Interval E-value
GDPD_GDE1 cd08573
Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester ...
 65-329 1.68e-131

Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G protein-coupled receptor (GPCR) signaling. In addition, GDE1 may interact with PRA1 domain family, member 2 (PRAF2, also known as JM4), which is an interacting protein of the G protein-coupled chemokine receptor CCR5. The catalytic activity, which is dependent on the integrity of the GDPD domain, is required for GDE1 cellular function.


Pssm-ID: 176515 [Multi-domain]  Cd Length: 258  Bit Score: 376.21  E-value: 1.68e-131
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344  65 IGGHRGAPKSFPENSMAGFAQAKADGADLIEFDVALTKDGKAVLMHDDDLDRTTDMKGPIrdktrAELDRCDISATFKRT 144
Cdd:cd08573   1 IIGHRGAGHDAPENTLAAFRQAKKNGADGVEFDLEFTKDGVPVLMHDDTVDRTTDGTGLV-----AELTWEELRKLNAAA 75

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344 145 APGDHCRlatVSRERVPDMEDVVKWAVENNTRMLFDVKDSDNELVDQIANLFQKYN-LYDKAIVCSFFPWVVYRIKKGDQ 223
Cdd:cd08573  76 KHRLSSR---FPGEKIPTLEEAVKECLENNLRMIFDVKSNSSKLVDALKNLFKKYPgLYDKAIVCSFNPIVIYKVRKADP 152

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344 224 KILTGLTWRLKFWSYHDIENIRPRYSGPKQMLFEMIDVAHVWLLKKVTPWYLGADLLLTNNLDISQALIMDQRRRGMRVA 303
Cdd:cd08573 153 KILTGLTWRPWFLSYTDDEGGPRRKSGWKHFLYSMLDVILEWSLHSWLPYFLGVSALLIHKDDISSAYVRYWRARGIRVI 232

                       250       260
                ....*....|....*....|....*.
gi 17542344 304 VWTVNDMAEMHWMLKTLNIPILTDYP 329
Cdd:cd08573 233 AWTVNTPTEKQYFAKTLNVPYITDSL 258
GDPD pfam03009
Glycerophosphoryl diester phosphodiesterase family; E. coli has two sequence related isozymes ...
 68-331 3.08e-67

Glycerophosphoryl diester phosphodiesterase family; E. coli has two sequence related isozymes of glycerophosphoryl diester phosphodiesterase (GDPD) - periplasmic and cytosolic. This family also includes agrocinopine synthase, the similarity to GDPD has been noted. This family appears to have weak but not significant matches to mammalian phospholipase C pfam00388, which suggests that this family may adopt a TIM barrel fold.


Pssm-ID: 397241 [Multi-domain]  Cd Length: 244  Bit Score: 211.88  E-value: 3.08e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344    68 HRGAPKSFPENSMAGFAQAKADGADLIEFDVALTKDGKAVLMHDDDLDRTTDMKGPIRDKTRAELDRCDISATFKRTAPG 147
Cdd:pfam03009   1 HRGASGSYPENTLASFRKAAEAGADYIEFDVQLTKDGVPVVLHDFNLDRTTDGAGYVRDLTLEELKRLDIGAGNSGPLSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344   148 DHCrlatvsreRVPDMEDVVKWavenntrmLFDVKDSDNELVDQIANLFQKYN-LYDKAIVCSFFPWVVYrikKGDQKIL 226
Cdd:pfam03009  81 ERV--------PFPTLEEVLEF--------DWDVGFNIEIKIKPYVEAIAPEEgLIVKDLLLSVDEILAK---KADPRRV 141

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344   227 TGLTWRLKFWSYHDIENirPRYsgPKQMLFEMIDVAHVWlLKKVTPWYLGADLLLTNN---LDISQALIMDQRRRGMRVA 303
Cdd:pfam03009 142 IFSSFNPDELKRLRELA--PKL--PLVFLSSGRAYAEAD-LLERAAAFAGAPALLGEValvDEALPDLVKRAHARGLVVH 216

                         250       260
                  ....*....|....*....|....*...
gi 17542344   304 VWTVNDMAEMHWMLKTLNIPILTDYPEL 331
Cdd:pfam03009 217 VWTVNNEDEMKRLLELGVDGVITDRPDT 244
UgpQ COG0584
Glycerophosphoryl diester phosphodiesterase [Lipid transport and metabolism];
61-335 1.46e-54

Glycerophosphoryl diester phosphodiesterase [Lipid transport and metabolism];


Pssm-ID: 440349 [Multi-domain]  Cd Length: 238  Bit Score: 178.91  E-value: 1.46e-54
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344  61 SGFKIGGHRGAPKSFPENSMAGFAQAKADGADLIEFDVALTKDGKAVLMHDDDLDRTTDMKGPIRDKTRAELDRCDISAT 140
Cdd:COG0584   1 PRPLIIAHRGASGLAPENTLAAFRAALELGADGIELDVQLTKDGVLVVFHDPTLDRTTNGTGRVADLTLAELRQLDAGSG 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344 141 fkrtapgdhcrlATVSRERVPDMEDVVKWaVENNTRMLFDVKDSDN---ELVDQIANLFQKYNLYDKAIVCSFFPWVVYR 217
Cdd:COG0584  81 ------------PDFAGERIPTLEEVLEL-VPGDVGLNIEIKSPPAaepDLAEAVAALLKRYGLEDRVIVSSFDPEALRR 147

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344 218 IKKGDQKILTGLtwrlkfwsyhdienirprysgpkqmLFEMIDVAHVWLLKKVTPWYLGADLLLtnnldISQALIMDQRR 297
Cdd:COG0584 148 LRELAPDVPLGL-------------------------LVEELPADPLELARALGADGVGPDYDL-----LTPELVAAAHA 197

                       250       260       270
                ....*....|....*....|....*....|....*....
gi 17542344 298 RGMRVAVWTVNDMAEMHWMLKT-LNIpILTDYPELTTQA 335
Cdd:COG0584 198 AGLKVHVWTVNDPEEMRRLLDLgVDG-IITDRPDLLRAV 235
GDPD_cytoplasmic_ScUgpQ2_like cd08561
Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic ...
 67-331 2.22e-40

Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.


Pssm-ID: 176504 [Multi-domain]  Cd Length: 249  Bit Score: 142.40  E-value: 2.22e-40
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344  67 GHRGAPKSFPENSMAGFAQAKADGADLIEFDVALTKDGKAVLMHDDDLDRTTDMKGPIRDKTRAELDRCDISATFK---- 142
Cdd:cd08561   3 AHRGGAGLAPENTLLAFEDAVELGADVLETDVHATKDGVLVVIHDETLDRTTDGTGPVADLTLAELRRLDAGYHFTddgg 82

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344 143 RTAPGDHCrlatvsRERVPDMEDVvkwaVEN--NTRMLFDVKDSDNELVDQIANLFQKYNLYDKAIVCSFFPWVVYRIKK 220
Cdd:cd08561  83 RTYPYRGQ------GIRIPTLEEL----FEAfpDVRLNIEIKDDGPAAAAALADLIERYGAQDRVLVASFSDRVLRRFRR 152

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344 221 GDQKILTGLT------WRLKFWSYHDienirPRYSGPKQMLfeMIDVAHVwLLKKVTPwylgadllltnnldisqALIMD 294
Cdd:cd08561 153 LCPRVATSAGegevaaFVLASRLGLG-----SLYSPPYDAL--QIPVRYG-GVPLVTP-----------------RFVRA 207

                       250       260       270
                ....*....|....*....|....*....|....*...
gi 17542344 295 QRRRGMRVAVWTVNDMAEMHWMLKtLNIP-ILTDYPEL 331
Cdd:cd08561 208 AHAAGLEVHVWTVNDPAEMRRLLD-LGVDgIITDRPDL 244
GDPD_TtGDE_like cd08563
Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar ...
 64-329 6.68e-37

Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.


Pssm-ID: 176506 [Multi-domain]  Cd Length: 230  Bit Score: 132.68  E-value: 6.68e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344  64 KIGGHRGAPKSFPENSMAGFAQAKADGADLIEFDVALTKDGKAVLMHDDDLDRTTDMKGPIRDKTRAELDRCDISATFKR 143
Cdd:cd08563   2 LIFAHRGYSGTAPENTLLAFKKAIEAGADGIELDVHLTKDGQLVVIHDETVDRTTNGKGYVKDLTLEELKKLDAGSWFDE 81

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344 144 tapgdhcrlaTVSRERVPDMEDVVKWAVENNTRMLFDVKDS---DNELVDQIANLFQKYNLYDKAIVCSFFPWVVYRIKK 220
Cdd:cd08563  82 ----------KFTGEKIPTLEEVLDLLKDKDLLLNIEIKTDvihYPGIEKKVLELVKEYNLEDRVIFSSFNHESLKRLKK 151

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344 221 GDQKILTG-LTWRLKF--WSY---HDIENIRPRYSgpkqmlfeMIDVAHVWLLKKvtpwylgadllltnnldisqalimd 294
Cdd:cd08563 152 LDPKIKLAlLYETGLQdpKDYakkIGADSLHPDFK--------LLTEEVVEELKK------------------------- 198

                       250       260       270
                ....*....|....*....|....*....|....*.
gi 17542344 295 qrrRGMRVAVWTVNDMAEMHwMLKTLNIP-ILTDYP 329
Cdd:cd08563 199 ---RGIPVRLWTVNEEEDMK-RLKDLGVDgIITNYP 230
GDPD cd08556
Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and ...
 65-318 9.79e-36

Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins; The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols are major sources of carbon and phosphate. Its catalytic mechanism is based on the metal ion-dependent acid-base reaction, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). Both, GDPD related proteins and PI-PLCs, belong to the superfamily of PI-PLC-like phosphodiesterases.


Pssm-ID: 176499 [Multi-domain]  Cd Length: 189  Bit Score: 128.54  E-value: 9.79e-36
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344  65 IGGHRGAPKSFPENSMAGFAQAKADGADLIEFDVALTKDGKAVLMHDddldrttdmkgpirdktraeldrcdisatfkrt 144
Cdd:cd08556   1 IIAHRGASGEAPENTLAAFRKALEAGADGVELDVQLTKDGVLVVIHD--------------------------------- 47

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344 145 apgdhcrlatvsrerVPDMEDVVKWaVENNTRMLFDVKDS--DNELVDQIANLFQKYNLYDKAIVCSFFPWVVYRIKKGD 222
Cdd:cd08556  48 ---------------IPTLEEVLEL-VKGGVGLNIELKEPtrYPGLEAKVAELLREYGLEERVVVSSFDHEALRALKELD 111

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344 223 QKILTGLTWrlkfwsyhdienirprYSGPKQMLFEMIDVAhvwllkkvtpwyLGADLLLTNNLDISQALIMDQRRRGMRV 302
Cdd:cd08556 112 PEVPTGLLV----------------DKPPLDPLLAELARA------------LGADAVNPHYKLLTPELVRAAHAAGLKV 163

                       250
                ....*....|....*.
gi 17542344 303 AVWTVNDMAEMHWMLK 318
Cdd:cd08556 164 YVWTVNDPEDARRLLA 179
GDPD_GDE4_like cd08575
Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester ...
 68-331 1.74e-31

Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.


Pssm-ID: 176517 [Multi-domain]  Cd Length: 264  Bit Score: 119.63  E-value: 1.74e-31
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344  68 HRGAPKSFPENSMAGFAQAKADGADLIEFDVALTKDGKAVLMHDDDLDRTTDMKGPIRDKTRAELDRCDISATFKrTAPG 147
Cdd:cd08575   6 HRGGAAEFPENTIAAFRHAVKNGADMLELDVQLTKDGQVVVFHDWDLDRLTGGSGLVSDLTYAELPPLDAGYGYT-FDGG 84

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344 148 DHCRLATVSRERVPDMEDVVKwaVENNTRMLFDVK-DSDNELVDQIANLFQKYNLYDKAIVCSFFP----------WVVY 216
Cdd:cd08575  85 KTGYPRGGGDGRIPTLEEVFK--AFPDTPINIDIKsPDAEELIAAVLDLLEKYKREDRTVWGSTNPeylralhpenPNLF 162

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344 217 RIKKGDQKILTGLTWrlkFWSYhdienIRPrYSGPKQMLFEMIDVAHVWLLKKVTPWYLGADLLLtnnldISQALIMDQR 296
Cdd:cd08575 163 ESFSMTRCLLLYLAL---GYTG-----LLP-FVPIKESFFEIPRPVIVLETFTLGEGASIVAALL-----WWPNLFDHLR 228

                       250       260       270
                ....*....|....*....|....*....|....*
gi 17542344 297 RRGMRVAVWTVNDMAEMHWMLKTLNIPILTDYPEL 331
Cdd:cd08575 229 KRGIQVYLWVLNDEEDFEEAFDLGADGVMTDSPTK 263
GDPD_EcUgpQ_like cd08562
Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic ...
 67-329 5.10e-31

Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI), and glycerophosphoserine (GPS), can only be hydrolyzed by UgpQ during transport at the inner side of the cytoplasmic membrane to alcohols and G3P, which is a source of phosphate. In contrast to Ca2+-dependent periplasmic phosphodiesterase GlpQ, cytosolic phosphodiesterase UgpQ requires divalent cations, such as Mg2+, Co2+, or Mn2+, for its enzyme activity.


Pssm-ID: 176505 [Multi-domain]  Cd Length: 229  Bit Score: 117.32  E-value: 5.10e-31
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344  67 GHRGAPKSFPENSMAGFAQAKADGADLIEFDVALTKDGKAVLMHDDDLDRTTDMKGPIRDKTRAELDRCDISATFKRTAP 146
Cdd:cd08562   3 AHRGASSLAPENTLAAFRAAAELGVRWVEFDVKLSGDGTLVLIHDDTLDRTTNGSGAVTELTWAELAQLDAGSWFSPEFA 82

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344 147 GdhcrlatvsrERVPDMEDVVKWAVENNTRMLFDVK---DSDNELVDQIANLFQKYNLYDKAIVCSFFPWVVyrikkgdq 223
Cdd:cd08562  83 G----------EPIPTLADVLELARELGLGLNLEIKpdpGDEALTARVVAAALRELWPHASKLLLSSFSLEA-------- 144

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344 224 kiltgltwrlkFWSYHDienIRPRYsgPKQMLFEMIDVAHVWLLKkvtpwYLGADLLLTNNLDISQALIMDQRRRGMRVA 303
Cdd:cd08562 145 -----------LRAARR---AAPEL--PLGLLFDTLPADWLELLA-----ALGAVSIHLNYRGLTEEQVKALKDAGYKLL 203

                       250       260       270
                ....*....|....*....|....*....|
gi 17542344 304 VWTVNDMAEM----HWMLKTlnipILTDYP 329
Cdd:cd08562 204 VYTVNDPARAaellEWGVDA----IFTDRP 229
GDPD_AtGDE_like cd08566
Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar ...
 65-207 8.45e-31

Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (AtGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homolgoues. Members in this family shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. AtGDE exists as a hexamer that is a trimer of dimers, which is unique among current known GDPD family members. However, it remains unclear if the hexamer plays a physiological role in AtGDE enzymatic function.


Pssm-ID: 176509 [Multi-domain]  Cd Length: 240  Bit Score: 117.02  E-value: 8.45e-31
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344  65 IGGHRGAP-KSFPENSMAGFAQAKADGADLIEFDVALTKDGKAVLMHDDDLDRTTDMKGPIRDKTRAELDRCDISATFkr 143
Cdd:cd08566   2 VVAHRGGWgAGAPENSLAAIEAAIDLGADIVEIDVRRTKDGVLVLMHDDTLDRTTNGKGKVSDLTLAEIRKLRLKDGD-- 79

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 17542344 144 tapgdhcrlATVSRERVPDMEDVVKWAvENNTRMLFDVKDSDnelVDQIANLFQKYNLYDKAIV 207
Cdd:cd08566  80 ---------GEVTDEKVPTLEEALAWA-KGKILLNLDLKDAD---LDEVIALVKKHGALDQVIF 130
GDPD_like_2 cd08582
Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial ...
 68-331 3.29e-30

Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.


Pssm-ID: 176524 [Multi-domain]  Cd Length: 233  Bit Score: 115.10  E-value: 3.29e-30
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344  68 HRGAPKSFPENSMAGFAQAKADGADLIEFDVALTKDGKAVLMHDDDLDRTTDMKGPIRDKTRAELDRCDISaTFKRTAPG 147
Cdd:cd08582   4 HRGASAEAPENTLAAFELAWEQGADGIETDVRLTKDGELVCVHDPTLKRTSGGDGAVSDLTLAELRKLDIG-SWKGESYK 82

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344 148 DhcrlatvsrERVPDMEDVVKWAVENNTRMLFDVKDSDN--ELVDQIANLFQKYNLYDKAIV-CSFFPWVVYRIKKGDQK 224
Cdd:cd08582  83 G---------EKVPTLEEYLAIVPKYGKKLFIEIKHPRRgpEAEEELLKLLKESGLLPEQIViISFDAEALKRVRELAPT 153

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344 225 ILTgltwrlkfwsYHDIENIRPRYSGPKqmlfemidvahvwLLKKVTPWylGADllLTNNLDISQALIMDQRRRGMRVAV 304
Cdd:cd08582 154 LET----------LWLRNYKSPKEDPRP-------------LAKSGGAA--GLD--LSYEKKLNPAFIKALRDAGLKLNV 206

                       250       260
                ....*....|....*....|....*..
gi 17542344 305 WTVNDMAEMHWMLKTLNIPILTDYPEL 331
Cdd:cd08582 207 WTVDDAEDAKRLIELGVDSITTNRPGR 233
GDPD_memb_like cd08579
Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial ...
 65-329 3.53e-29

Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.


Pssm-ID: 176521 [Multi-domain]  Cd Length: 220  Bit Score: 111.87  E-value: 3.53e-29
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344  65 IGGHRGAPKSFPENSMAGFAQAKADGADLIEFDVALTKDGKAVLMHDDDLDRTTDMKGPIRDKTRAELDRCDISATFKRT 144
Cdd:cd08579   1 IIAHRGVSSNGVENTLEALEAAIKAKPDYVEIDVQETKDGQFVVMHDANLKRLAGVNKKVWDLTLEELKKLTIGENGHGA 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344 145 apgdhcrlatvsreRVPDMEDVVKWAVENNTRMLFDVKDSDN---ELVDQIANLFQKYNLYDKAIVCSFFPWVVYRIKKG 221
Cdd:cd08579  81 --------------KIPSLDEYLALAKGLKQKLLIELKPHGHdspDLVEKFVKLYKQNLIENQHQVHSLDYRVIEKVKKL 146

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344 222 DQKILTGLtwrlkfwsyhdienIRPRYSGpkqmlfemidvahvwllkkvTPWYLGADLLLTNNLDISQALIMDQRRRGMR 301
Cdd:cd08579 147 DPKIKTGY--------------ILPFNIG--------------------NLPKTNVDFYSIEYSTLNKEFIRQAHQNGKK 192

                       250       260
                ....*....|....*....|....*....
gi 17542344 302 VAVWTVNDMAEMHWMLKtLNIP-ILTDYP 329
Cdd:cd08579 193 VYVWTVNDPDDMQRYLA-MGVDgIITDYP 220
GDPD_TmGDE_like cd08568
Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins; ...
 64-330 1.52e-28

Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.


Pssm-ID: 176511 [Multi-domain]  Cd Length: 226  Bit Score: 110.47  E-value: 1.52e-28
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344  64 KIGGHRGAPKSFPENSMAGFAQAKADGADLIEFDVALTKDGKAVLMHDDDLDRTTDMKGPIRDKTRAELdrcdisatfKR 143
Cdd:cd08568   1 IILGHRGYRAKYPENTLEAFKKAIEYGADGVELDVWLTKDGKLVVLHDENLKRVGGVDLKVKELTYKEL---------KK 71

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344 144 TAPGDhcrlatvsrERVPDMEDVVKwAVENNTRMLFDVKDSDNelVDQIANLFQKYNLYDKAIVCSFFPWVVYRIKKGDQ 223
Cdd:cd08568  72 LHPGG---------ELIPTLEEVFR-ALPNDAIINVEIKDIDA--VEPVLEIVEKFNALDRVIFSSFNHDALRELRKLDP 139

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344 224 KILTGL---TWRLKFWSYHDIENIRPrYSgpkqmlfemidvAHVWLlkkvtpwylgaDLLLTNNLDISQALIMDQRRRGM 300
Cdd:cd08568 140 DAKVGLligEEEEGFSIPELHEKLKL-YS------------LHVPI-----------DAIGYIGFEKFVELLRLLRKLGL 195

                       250       260       270
                ....*....|....*....|....*....|
gi 17542344 301 RVAVWTVNDMAEMHwMLKTLNIPILTDYPE 330
Cdd:cd08568 196 KIVLWTVNDPELVP-KLKGLVDGVITDDVE 224
GDPD_YPL206cp_fungi cd08570
Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and ...
 65-329 6.18e-27

Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholipase C-type degradation mechanism. YPL206cp has been characterized as a PG-specific phospholipase C that selectively catalyzes the cleavage of PG, not glycerophosphoinositol (GPI) or glycerophosphocholine (GPC), to diacylglycerol (DAG) and glycerophosphate. Members in this family are distantly related to S. cerevisiae YPL110cp, which selectively hydrolyzes glycerophosphocholine (GPC), not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate, and has been characterized as a cytoplasmic GPC-specific phosphodiesterase.


Pssm-ID: 176512 [Multi-domain]  Cd Length: 234  Bit Score: 106.54  E-value: 6.18e-27
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344  65 IGGHRGAPKSFPENSMAGFAQAKADGADLIEFDVALTKDGKAVLMHDDDLDRTTDMKGPIRDK-TRAELDRCdisatfkR 143
Cdd:cd08570   1 VIGHRGYKAKYPENTLLAFEKAVEAGADAIETDVHLTKDGVVVISHDPNLKRCFGKDGLIIDDsTWDELSHL-------R 73

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344 144 TAPGDHcrlatvsrERVPDMEDVVKWAVE---NNTRMLFDVKdSDNE---LVDQIANLFQKYNLYDKaivcsffpWvvyr 217
Cdd:cd08570  74 TIEEPH--------QPMPTLKDVLEWLVEhelPDVKLMLDIK-RDNDpeiLFKLIAEMLAVKPDLDF--------W---- 132

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344 218 ikkgDQKILTGLtWRLKFWSYHDIenirprysgpkqmLFEMIDVAHVWLLKKVTPWYLGADLLLTNnldIS--------- 288
Cdd:cd08570 133 ----RERIILGL-WHLDFLKYGKE-------------VLPGFPVFHIGFSLDYARHFLNYSEKLVG---ISmhfvslwgp 191

                       250       260       270       280
                ....*....|....*....|....*....|....*....|...
gi 17542344 289 --QALIMDQRRRGMRVAVWTVNDMAEMHWMLKTLNIPILTDYP 329
Cdd:cd08570 192 fgQAFLPELKKNGKKVFVWTVNTEEDMRYAIRLGVDGVITDDP 234
GDPD_pAtGDE_like cd08565
Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens ...
 65-220 1.96e-25

Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (pAtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.


Pssm-ID: 176508 [Multi-domain]  Cd Length: 235  Bit Score: 102.48  E-value: 1.96e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344  65 IGGHRGAPKSFPENSMAGFAQAKADGADLIEFDVALTKDGKAVLMHDDDLDRTTDMKGPIRDKTRAELDRCDISATFKrt 144
Cdd:cd08565   1 IAGHRGGRNLWPENTLEGFRKALELGVDAVEFDVHLTADGEVVVIHDPTLDRTTHGTGAVRDLTLAERKALRLRDSFG-- 78

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344 145 apgdhcrlatvsrERVPDMEDVVkwAVENNTRMLFDVK---DSDN----ELVDQIANLFQKYNLYDKAIVCSFFPWVVYR 217
Cdd:cd08565  79 -------------EKIPTLEEVL--ALFAPSGLELHVEiktDADGtpypGAAALAAATLRRHGLLERSVLTSFDPAVLTE 143


                ...
gi 17542344 218 IKK 220
Cdd:cd08565 144 VRK 146
GDPD_GDE4 cd08612
Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester ...
 68-334 3.88e-24

Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.


Pssm-ID: 176553 [Multi-domain]  Cd Length: 300  Bit Score: 100.37  E-value: 3.88e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344  68 HRGAPKSFPENSMAGFAQAKADGADLIEFDVALTKDGKAVLMHDDDLDRTTdmkGPirDKTRAELDRCD-------ISAT 140
Cdd:cd08612  32 HRGGSGENLENTMEAFEHAVKVGTDMLELDVHLTKDGQVVVSHDENLLRSC---GV--DKLVSDLNYADlppylekLEVT 106

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344 141 FkrtAPGDHCrLATVSRERVPDMEDVVKwaVENNTRMLFDVKDSDNELVDQIANLFQKYNLYDKAIVCSFFPWVVYRIKK 220
Cdd:cd08612 107 F---SPGDYC-VPKGSDRRIPLLEEVFE--AFPDTPINIDIKVENDELIKKVSDLVRKYKREDITVWGSFNDEIVKKCHK 180

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344 221 GDQKI----------------LTGLtwrLKFWSyhdienIRPRYsgpkqMLFEMIDVAH-VWLLKKVTPWYlGADLLLTN 283
Cdd:cd08612 181 ENPNIplffslkrvllllllyYTGL---LPFIP------IKESF-----LEIPMPSIFLkTYFPKSMSRLN-RFVLFLID 245

                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|....
gi 17542344 284 NLDISQALIMDQRRRGMRVAVWTVNDMAEmhwMLKTLNIP---ILTDYPELTTQ 334
Cdd:cd08612 246 WLLMRPSLFRHLQKRGIQVYGWVLNDEEE---FERAFELGadgVMTDYPTKLRE 296
GDPD_SaGlpQ_like cd08601
Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins; ...
 63-331 8.05e-24

Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.


Pssm-ID: 176543 [Multi-domain]  Cd Length: 256  Bit Score: 98.54  E-value: 8.05e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344  63 FKIGGHRGAPKSFPENSMAGFAQAKADGADLIEFDVALTKDGKAVLMHDDDLDRTT--DMKGPIRDKTRAELDRCDISAT 140
Cdd:cd08601   1 NAVIAHRGASGYAPEHTFAAYDLAREMGADYIELDLQMTKDGVLVAMHDETLDRTTniERPGPVKDYTLAEIKQLDAGSW 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344 141 FKRTAPgDHCRlATVSRERVPDMEDVVKWAvENNTRMLFDVKDSD--NELVDQIANLFQKYNLY------DKAIVCSFFP 212
Cdd:cd08601  81 FNKAYP-EYAR-ESYSGLKVPTLEEVIERY-GGRANYYIETKSPDlyPGMEEKLLATLDKYGLLtdnlknGQVIIQSFSK 157

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344 213 WVVYRIKKGDQKI-LTGLTWrlkfwsyhdienirprYSGPKQMLFEMIDVAHVwllkkvtpwylGADLLLTNNLDISQAL 291
Cdd:cd08601 158 ESLKKLHQLNPNIpLVQLLW----------------YGEGAETYDKWLDEIKE-----------YAIGIGPSIADADPWM 210

                       250       260       270       280
                ....*....|....*....|....*....|....*....|
gi 17542344 292 IMDQRRRGMRVAVWTVNDMAEMHWMLKTLNIPILTDYPEL 331
Cdd:cd08601 211 VHLIHKKGLLVHPYTVNEKADMIRLINWGVDGMFTNYPDR 250
GDPD_SpGDE_like cd08567
Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi ...
 63-331 1.17e-23

Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.


Pssm-ID: 176510 [Multi-domain]  Cd Length: 263  Bit Score: 98.15  E-value: 1.17e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344  63 FKIGGHRGAPKSFPENSMAGFAQAKADGADLIEFDVALTKDGKAVLMHDDDLDRTT----------DMKGPIRDKTRAEL 132
Cdd:cd08567   1 FDLQGHRGARGLLPENTLPAFAKALDLGVDTLELDLVLTKDGVIVVSHDPKLNPDItrdpdgawlpYEGPALYELTLAEI 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344 133 DRCDISATFKRTAPGDHCRLA-TVSRERVPDMEDV---VKWAVENNTRMLFDVK---DSDN------ELVDQIANLFQKY 199
Cdd:cd08567  81 KQLDVGEKRPGSDYAKLFPEQiPVPGTRIPTLEEVfalVEKYGNQKVRFNIETKsdpDRDIlhpppeEFVDAVLAVIRKA 160

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344 200 NLYDKAIVCSFFPWVVYRIKKGDQKILTG-LTWRlkfwsyhdieniRPRYSGPKQMlfemidvahvwllKKvtpwyLGAD 278
Cdd:cd08567 161 GLEDRVVLQSFDWRTLQEVRRLAPDIPTVaLTEE------------TTLGNLPRAA-------------KK-----LGAD 210

                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|...
gi 17542344 279 LLLTNNLDISQALIMDQRRRGMRVAVWTVNDMAEMHWMLKTLNIPILTDYPEL 331
Cdd:cd08567 211 IWSPYFTLVTKELVDEAHALGLKVVPWTVNDPEDMARLIDLGVDGIITDYPDL 263
GDPD_like_3 cd08585
Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial ...
 68-314 2.07e-21

Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity with Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.


Pssm-ID: 176527 [Multi-domain]  Cd Length: 237  Bit Score: 91.62  E-value: 2.07e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344  68 HRG---APKSFPENSMAGFAQAkADGADLIEFDVALTKDGKAVLMHDDDLDRTTDMKGPIRDKTRAELDRCDISATfkrt 144
Cdd:cd08585   9 HRGlhdRDAGIPENSLSAFRAA-AEAGYGIELDVQLTADGEVVVFHDDNLKRLTGVEGRVEELTAAELRALRLLGT---- 83

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344 145 apgdhcrlatvsRERVPDMEDVVKwAVENNTRMLFDVK---DSDNELVDQIANLFQKYNlyDKAIVCSFFPWVVYRIKKG 221
Cdd:cd08585  84 ------------DEHIPTLDEVLE-LVAGRVPLLIELKscgGGDGGLERRVLAALKDYK--GPAAIMSFDPRVVRWFRKL 148

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344 222 DQKILTGLT---WRLKFWSYHDIEnirprySGPKQMLFEMID----VA-HVWLLKKVTPWYLGAdllltnnldisqalim 293
Cdd:cd08585 149 APGIPRGQLsegSNDEADPAFWNE------ALLSALFSNLLTrpdfIAyHLDDLPNPFVTLARA---------------- 206

                       250       260
                ....*....|....*....|.
gi 17542344 294 dqrRRGMRVAVWTVNDMAEMH 314
Cdd:cd08585 207 ---LLGMPVIVWTVRTEEDIA 224
GDPD_periplasmic_GlpQ_like cd08559
Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins; This ...
 67-329 1.31e-20

Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI), and glycerophosphoserine (GPS), to the corresponding alcohols and G3P, which is subsequently transported into the cell through the GlpT transport system. Ca2+ is required for GlpQ enzymatic activity. This subfamily also includes some GP-GDEs in higher plants and their eukaryotic homologs, which show very high sequence similarities with bacterial periplasmic GP-GDEs.


Pssm-ID: 176502 [Multi-domain]  Cd Length: 296  Bit Score: 90.41  E-value: 1.31e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344  67 GHRGAPKSFPENSMAGFAQAKADGADLIEFDVALTKDGKAVLMHDDDLDRTTDMK------------GPIRDKTRAELDR 134
Cdd:cd08559   5 AHRGASGYAPEHTLAAYALAIEMGADYIEQDLVMTKDGVLVARHDPTLDRTTNVAehfpfrgrkdtgYFVIDFTLAELKT 84

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344 135 CDISATFKRTAPGDhcRLATVSRERVPDMEDVVKWAVENNTRM--------------LFDVKDSDNElvDQIANLFQKYN 200
Cdd:cd08559  85 LRAGSWFNQRYPER--APSYYGGFKIPTLEEVIELAQGLNKSTgrnvgiypetkhptFHKQEGPDIE--EKLLEVLKKYG 160

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344 201 LY---DKAIVCSFFPWVVYRIKKGDQKI-LTGLTWrlkfwsYHDIENIRPRYSGPKQM----LFEMIDVAHVwllkkVTP 272
Cdd:cd08559 161 YTgknDPVFIQSFEPESLKRLRNETPDIpLVQLID------YGDWAETDKKYTYAWLTtdagLKEIAKYADG-----IGP 229

                       250       260       270       280       290       300
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 17542344 273 WYLGADLLLTNNLDISQALIMDQRRRGMRVAVWTVND---------MAEMHWMLKTLNIP-ILTDYP 329
Cdd:cd08559 230 WKSLIIPEDSNGLLVPTDLVKDAHKAGLLVHPYTFRNenlflapdfKQDMDALYNAAGVDgVFTDFP 296
GDPD_like_1 cd08581
Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial ...
 67-169 2.41e-20

Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.


Pssm-ID: 176523 [Multi-domain]  Cd Length: 229  Bit Score: 88.16  E-value: 2.41e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344  67 GHRGAPKSFPENSMAGFAQAKADGADLIEFDVALTKDGKAVLMHDDDLDRTTDMKGPIRDKTRAELD--RCDISATF-KR 143
Cdd:cd08581   3 AHRGYPARYPENTLVGFRAAVDAGARFVEFDVQLSADGVPVVFHDDTLLRLTGVEGLLHELEDAELDslRVAEPARFgSR 82

                        90       100
                ....*....|....*....|....*.
gi 17542344 144 TAPgdhcrlatvsrERVPDMEDVVKW 169
Cdd:cd08581  83 FAG-----------EPLPSLAAVVQW 97
ugpQ PRK09454
cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
 68-173 5.98e-18

cytoplasmic glycerophosphodiester phosphodiesterase; Provisional


Pssm-ID: 236524 [Multi-domain]  Cd Length: 249  Bit Score: 81.91  E-value: 5.98e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344   68 HRGAPKSFPENSMAGFAQAKADGADLIEFDVALTKDGKAVLMHDDDLDRTTDMKGPIRDKTRAELDRCDISATFKRTAPG 147
Cdd:PRK09454  13 HRGGGKLAPENTLAAIDVGARYGHRMIEFDAKLSADGEIFLLHDDTLERTSNGWGVAGELTWQDLAQLDAGSWFSAAFAG 92

                         90       100
                 ....*....|....*....|....*.
gi 17542344  148 dhcrlatvsrERVPDMEDVVKWAVEN 173
Cdd:PRK09454  93 ----------EPLPTLSQVAARCRAH 108
GDPD_GDE_2_3_6 cd08574
Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester ...
 64-187 1.64e-17

Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bone tissues and spleen. It selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol and functions as an inducer of osteoblast differentiation. Mammalian GDE6 is predominantly expressed in the spermatocytes of testis, and its specific physiological function has not been elucidated yet.


Pssm-ID: 176516 [Multi-domain]  Cd Length: 252  Bit Score: 80.81  E-value: 1.64e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344  64 KIGGHRGAPKSFPENSMAGFAQAKADGADLIEFDVALTKDGKAVLMHDDDLDRTTDMKG--PIRDKTRA------ELDRC 135
Cdd:cd08574   3 ALIGHRGAPMLAPENTLMSFEKALEHGVYGLETDVTISYDGVPFLMHDRTLRRTTNVADvfPERAHERAsmftwtDLQQL 82

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 17542344 136 DISATFKRTAP---------GDHCRlatVSRERVPDMEDVVKWAVENNTRMLFDVKDSDNE 187
Cdd:cd08574  83 NAGQWFLKDDPfwtasslseSDREE---AGNQSIPSLAELLRLAKKHNKSVIFDLRRPPPN 140
GDPD_GsGDE_like cd08564
Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria ...
 64-210 1.43e-16

Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.


Pssm-ID: 176507 [Multi-domain]  Cd Length: 265  Bit Score: 78.67  E-value: 1.43e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344  64 KIGGHRGAPKS--FPENSMAGFAQAKADGADLIEFDVALTKDGKAVLMH--DDDLDRTT------DMKGPIRDKTRAELD 133
Cdd:cd08564   5 IIVGHRGAGCStlYPENTLPSFRRALEIGVDGVELDVFLTKDNEIVVFHgtEDDTNPDTsiqlddSGFKNINDLSLDEIT 84

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 17542344 134 RCDisatFKRTAPGDHCRLATVSRERVPDMEDVVKwAVENNTRMLFDVKDSDNELVDQIANLFQKYNLYDKAIVCSF 210
Cdd:cd08564  85 RLH----FKQLFDEKPCGADEIKGEKIPTLEDVLV-TFKDKLKYNIELKGREVGLGERVLNLVEKYGMILQVHFSSF 156
GDPD_GDE3 cd08609
Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester ...
 67-197 7.68e-16

Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalian GDE3 functions as an inducer of osteoblast differentiation. It also plays a critical role for actin cytoskeletal modulation. The catalytic activity of GDPD domain is essential for mammalian GDE3 cellular function.


Pssm-ID: 176551 [Multi-domain]  Cd Length: 315  Bit Score: 77.27  E-value: 7.68e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344  67 GHRGAPKSFPENSMAGFAQAKADGADLIEFDVALTKDGKAVLMHDDDLDRTTDMKG--PIRDK------TRAELDRCDIS 138
Cdd:cd08609  31 GHRGAPMLAPENTLMSLRKSLECGVVVFETDVMVSKDGVPFLMHDEGLLRTTNVKDvfPGRDAagsnnfTWTELKTLNAG 110

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 17542344 139 ATFKRTAP--------GDHCRLATvsRERVPDMEDVVKWAVENNTRMLFDVKDSDNELVDQIANLFQ 197
Cdd:cd08609 111 SWFLERRPfwtlsslsEEDRREAD--NQTVPSLSELLDLAKKHNVSIMFDLRNENNSHVFYSSFVFY 175
GDPD_EcGlpQ_like cd08600
Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins; ...
 68-131 2.68e-14

Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli periplasmic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), GlpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the E. coli glp operon codes for a periplasmic phosphodiesterase GlpQ, which is the prototype of this family. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI), and glycerophosphoserine (GPS), to the corresponding alcohols and G3P, which is subsequently transported into the cell through the GlpT transport system. Ca2+ is required for the enzymatic activity of GlpQ. This family also includes a surface-exposed lipoprotein, protein D (HPD), from Haemophilus influenza Type b and nontypeable strains, which shows very high sequence similarity with E. coli GlpQ. HPD has been characterized as a human immunoglobulin D-binding protein with glycerophosphodiester phosphodiesterase activity. It can hydrolyze phosphatidylcholine from host membranes to produce free choline on the lipopolysaccharides on the surface of pathogenic bacteria.


Pssm-ID: 176542 [Multi-domain]  Cd Length: 318  Bit Score: 72.81  E-value: 2.68e-14
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 17542344  68 HRGAPKSFPENSMAGFAQAKADGADLIEFDVALTKDGKAVLMHDDDLDRTTDMKGPIRDKTRAE 131
Cdd:cd08600   6 HRGASGYLPEHTLEAKALAYAQGADYLEQDVVLTKDDKLVVIHDHYLDNVTNVAEKFPDRKRKD 69
GDPD_Rv2277c_like cd08580
Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c ...
 68-209 3.65e-13

Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.


Pssm-ID: 176522 [Multi-domain]  Cd Length: 263  Bit Score: 68.51  E-value: 3.65e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344  68 HRGAPKSFPENSMAGFAQAKADGADLIEFDVALTKDGKAVLMHDDDLDRTTDMKGPIRDKTRAELDRCDISATFKRTApG 147
Cdd:cd08580   6 HRGGTADAPENTLLAISKALANGADAIWLTVQLSKDGVPVLYRPSDLKSLTNGSGAVSAYTAAQLATLNAGYNFKPEG-G 84

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 17542344 148 DHCRLATVsreRVPDMEDVVKwAVENNTRMLfDVKDSD-NELVDQIANLFQKYNLYDKAIVCS 209
Cdd:cd08580  85 YPYRGKPV---GIPTLEQVLR-AFPDTPFIL-DMKSLPaDPQAKAVARVLERENAWSRVRIYS 142
GDPD_GDE4_like_1 cd08613
Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of ...
 77-147 3.81e-13

Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial homologs of mammalian GDE4, a transmembrane protein whose cellular function has not been elucidated yet.


Pssm-ID: 176554 [Multi-domain]  Cd Length: 309  Bit Score: 69.31  E-value: 3.81e-13
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 17542344  77 ENSMAGFAQAKADGADLIEFDVALTKDGKAVLMHDDDLDRTTDMKGPIRDKTRAELDRCDISatFKRTAPG 147
Cdd:cd08613  60 ENTIASMQAAFDAGADVVELDVHPTKDGEFAVFHDWTLDCRTDGSGVTRDHTMAELKTLDIG--YGYTADG 128
GDPD_ScGlpQ1_like cd08602
Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar ...
 67-119 2.59e-12

Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively.


Pssm-ID: 176544 [Multi-domain]  Cd Length: 309  Bit Score: 66.55  E-value: 2.59e-12
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 17542344  67 GHRGAPKSFPENSMAGFAQAKADGADLIEFDVALTKDGKAVLMHDDDLDRTTD 119
Cdd:cd08602   5 AHRGASGYRPEHTLAAYQLAIEQGADFIEPDLVSTKDGVLICRHEPELSGTTD 57
GDPD_GDE5_like cd08572
Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester ...
 67-132 7.67e-12

Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.


Pssm-ID: 176514 [Multi-domain]  Cd Length: 293  Bit Score: 64.99  E-value: 7.67e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344  67 GHRGAPKS--------FPENSMAGFAQAKADGADLIEFDVALTKDGKAVLMHDDDLDRTTDMKG----------PIRDKT 128
Cdd:cd08572   4 GHRGLGKNyasgslagIRENTIASFLAAAKHGADMVEFDVQLTKDGVPVIYHDFTISVSEKSKTgsdegelievPIHDLT 83


                ....
gi 17542344 129 RAEL 132
Cdd:cd08572  84 LEQL 87
glpQ PRK11143
glycerophosphodiester phosphodiesterase; Provisional
 68-131 6.08e-11

glycerophosphodiester phosphodiesterase; Provisional


Pssm-ID: 236859 [Multi-domain]  Cd Length: 355  Bit Score: 62.77  E-value: 6.08e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 17542344   68 HRGAPKSFPENSMAGFAQAKADGADLIEFDVALTKDGKAVLMHDDDLDRTTDMKGPIRDKTRAE 131
Cdd:PRK11143  32 HRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDQLVVLHDHYLDRVTDVAERFPDRARKD 95
GDPD_GDE6 cd08610
Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester ...
 67-121 7.88e-11

Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation.


Pssm-ID: 176552 [Multi-domain]  Cd Length: 316  Bit Score: 62.20  E-value: 7.88e-11
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*
gi 17542344  67 GHRGAPKSFPENSMAGFAQAKADGADLIEFDVALTKDGKAVLMHDDDLDRTTDMK 121
Cdd:cd08610  27 GHRGAPMLAPENTMMSFEKAIEHGAHGLETDVTLSYDGVPFLMHDFTLKRTTNIG 81
GDPD_GDE5 cd08607
Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester ...
 67-132 2.24e-10

Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.


Pssm-ID: 176549 [Multi-domain]  Cd Length: 290  Bit Score: 60.77  E-value: 2.24e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344  67 GHRGAPKSF-------PENSMAGFAQAKADGADLIEFDVALTKDGKAVLMHDDDLDRTTDMKG----------PIRDKTR 129
Cdd:cd08607   4 GHRGAGNSYtaasavvRENTIASFLQAAEHGADMVEFDVQLTKDLVPVVYHDFTLRVSLKSKGdsdrddllevPVKDLTY 83


                ...
gi 17542344 130 AEL 132
Cdd:cd08607  84 EQL 86
GDPD_GDE2 cd08608
Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester ...
 65-183 4.88e-10

Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE2 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 5 (GDPD5)) and their metazoan homologs. Mammalian GDE2 is transmembrane protein primarily expressed in mature neurons. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE2 selectively hydrolyzes glycerophosphocholine (GPC) and has been characterized as GPC-GDE (EC 3.1.4.2) that contributes to osmotic regulation of cellular GPC. Mammalian GDE2 functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE2 also plays a critical role for retinoid-induced neuronal outgrowth. The catalytic activity of GDPD domain is essential for mammalian GDE2 cellular function.


Pssm-ID: 176550  Cd Length: 351  Bit Score: 60.24  E-value: 4.88e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344  65 IGGHRGAPKSFPENSMAGFAQAKADGADLIEFDVALTKDGKAVLMHDDDLDRTTDMKG--PIRDKTRA------ELDRCD 136
Cdd:cd08608   4 IIGHRGAPMLAPENTLMSFQKALEQKVYGLQADVTISLDGVPFLMHDRTLRRTTNVDRvfPERQYEDAsmfnwtDLERLN 83

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 17542344 137 ISATFKRT---------APGDHCRLATVSrerVPDMEDVVKWAVENNTRMLFDVKD 183
Cdd:cd08608  84 AGQWFLKDdpfwtaqslSPSDRKEAGNQS---VCSLAELLELAKRYNASVLLNLRR 136
GDPD_EcGlpQ_like_1 cd08560
Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic ...
 46-119 6.24e-10

Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.


Pssm-ID: 176503  Cd Length: 356  Bit Score: 59.74  E-value: 6.24e-10
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 17542344  46 TKNEKCSSKNVdtFFSGFKIGgHRGAPKSFPENSMAGFAQAKADGADLIEFDVALTKDGKAVLMHDD-DLDRTTD 119
Cdd:cd08560   3 DKLLSCAEKPF--RKTDFSIG-HRGAPLQFPEHTRESYEAAARMGAGILECDVTFTKDRELVCRHSQcDLHTTTN 74
PI-PLCc_GDPD_SF cd08555
Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases ...
 65-125 1.08e-09

Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily; The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols that are major sources of carbon and phosphate. Both, PI-PLCs and GP-GDEs, can hydrolyze the 3'-5' phosphodiester bonds in different substrates, and utilize a similar mechanism of general base and acid catalysis with conserved histidine residues, which consists of two steps, a phosphotransfer and a phosphodiesterase reaction. This superfamily also includes Neurospora crassa ankyrin repeat protein NUC-2 and its Saccharomyces cerevisiae counterpart, Phosphate system positive regulatory protein PHO81, glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs). The residues essential for enzyme activities and metal binding are not conserved in these sequence homologs, which might suggest that the function of catalytic domains in these proteins might be distinct from those in typical PLC-like phosphodiesterases.


Pssm-ID: 176498 [Multi-domain]  Cd Length: 179  Bit Score: 57.06  E-value: 1.08e-09
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 17542344  65 IGGHRGAPKSFPENSMAGFAQAKADGADLIEFDVALTKDGKAVLMHDDDLDRTTDMKGPIR 125
Cdd:cd08555   1 VLSHRGYSQNGQENTLEAFYRALDAGARGLELDVRLTKDGELVVYHGPTLDRTTAGILPPT 61
GDPD_GDE5_like_1_plant cd08605
Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester ...
 65-135 1.34e-09

Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.


Pssm-ID: 176547 [Multi-domain]  Cd Length: 282  Bit Score: 58.19  E-value: 1.34e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344  65 IGGHRG-----------APKSFPENSMAGFAQAKADGADLIEFDVALTKDGKAVLMHDDD--LDRTTDMKGP-IRDKTRA 130
Cdd:cd08605   2 VIGHRGlgmnrashqpsVGPGIRENTIASFIAASKFGADFVEFDVQVTRDGVPVIWHDDFivVERGGEVESSrIRDLTLA 81


                ....*
gi 17542344 131 ELDRC 135
Cdd:cd08605  82 ELKAL 86
GDPD_YPL110cp_fungi cd08606
Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and ...
 67-212 5.58e-06

Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which implies that YPL110cp may mediate protein-protein interactions in a variety of proteins and play a role in maintaining cellular phosphate levels. Members in this family are distantly related to S. cerevisiae YPL206cp, which selectively catalyzes the cleavage of phosphatidylglycerol (PG), not glycerophosphoinositol (GPI) or glycerophosphocholine (GPC), to diacylglycerol (DAG) and glycerophosphate, and has been characterized as a PG-specific phospholipase C.


Pssm-ID: 176548 [Multi-domain]  Cd Length: 286  Bit Score: 47.44  E-value: 5.58e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344  67 GHRGAPKSFP--------ENSMAGFAQAKADGADLIEFDVALTKDGKAVLMHDDDLDRT-TDMkgPIRDKT--------R 129
Cdd:cd08606   6 GHRGLGKNTAerkslqlgENTVESFILAASLGASYVEVDVQLTKDLVPVIYHDFLVSETgTDV--PIHDLTleqflhlsR 83

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542344 130 AELDRCDISATFKRTAPGDH-CRLATVSRERVPDMEDVVKWAVENNTRMLFDVKDSD--------NELVDQIANLFQKYN 200
Cdd:cd08606  84 MKYTVDFKKKGFKGNSRGHSiQAPFTTLEELLKKLPKSVGFNIELKYPMLHEAEEEEvapvaielNAFVDTVLEKVFDYG 163

                       170
                ....*....|..
gi 17542344 201 LYDKAIVCSFFP 212
Cdd:cd08606 164 AGRNIIFSSFTP 175
GDPD_SHV3_repeat_2 cd08604
Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester ...
 68-128 7.04e-05

Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserved in SHV3 and SVLs, which suggests that the function of GDPD domains in these proteins might be distinct from those in typical bacterial GP-GDEs. In addition, the two tandem repeats show low sequence similarity to each other, suggesting they have different biochemical function. Most of the members of this family are Arabidopsis-specific gene products. To date, SHV3 orthologues are only found in Physcomitrella patens. This CD includes domain II (the second GDPD domain of SHV3 and SVLs), which is necessary for SHV3 function.


Pssm-ID: 176546  Cd Length: 300  Bit Score: 43.87  E-value: 7.04e-05
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 17542344  68 HRGAPKSFPENSMAGFAQAKADGADLIEFDVALTKDGKAVLMHDDDL-DRTTDMKGPIRDKT 128
Cdd:cd08604   6 HNGASGDYPGCTDLAYQKAVKDGADVIDCSVQMSKDGVPFCLDSINLiNSTTVATSKFSNRA 67
GDPD_SHV3_plant cd08571
Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like ...
 68-119 1.68e-04

Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins; This subfamily corresponds to the glycerophosphodiester phosphodiesterase (GDPD) domain present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserved in SHV3 and SVLs, which suggests that the function of GDPD domains in these proteins might be distinct from those in typical bacterial GP-GDEs. In addition, the two tandem repeats show low sequence similarity to each other, suggesting they have different biochemical function. Most members of this family are Arabidopsis-specific gene products. To date, SHV3 orthologues are only found in Physcomitrella patens.


Pssm-ID: 176513  Cd Length: 302  Bit Score: 43.04  E-value: 1.68e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|..
gi 17542344  68 HRGAPKSFPENSMAGFAQAKADGADLIEFDVALTKDGKAVLMHDDDLDRTTD 119
Cdd:cd08571   6 RGGASGDYPDSTDLAYQKAISDGADVLDCDVQLTKDGVPICLPSINLDNSTT 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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