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Conserved domains on  [gi|17538254|ref|NP_501366|]
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Amidase domain-containing protein [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Amidase pfam01425
Amidase;
85-558 1.23e-148

Amidase;


:

Pssm-ID: 396144 [Multi-domain]  Cd Length: 442  Bit Score: 434.81  E-value: 1.23e-148
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254    85 DAVRTYYAKAISANEKTNS-VCMFVKEAEKWAMDWDEKAKDPQfQKPPLFGLPMSLKECVPLEGYDQTRGFVQDTFRPTE 163
Cdd:pfam01425   1 ELVEAFLDRIEAANPKLNAfVTVFFDEALAQAAAADKQRAAGD-PKGPLHGVPIAVKDNIDVKGVPTTAGSKALENYPAP 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254   164 TDGVLVQQLKKLGAIPYVQTNVPQSLLSYNCSNPVYGTTNHPMDKTRTSGGSSGGESALISADGSLLGIGGDVGGSIRIP 243
Cdd:pfam01425  80 YDATVVERLRKAGAVILGKTNMDEFAMGSSTENSVFGPTRNPWDLSRTPGGSSGGSAAAVAAGLVPLAIGTDTGGSIRIP 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254   244 CAYTGTTGIKPSHLRFSHRGVCgsvpGRPLINSNDGPMSTRVETNVDFLRTVWA-DTWITEQDPYvPPVTWNEEAYKSDK 322
Cdd:pfam01425 160 ASFCGLVGLKPTYGRVSRYGVV----GYASSLDQVGPLARSVEDAALLLRVISGyDPKDSTSLPP-PVPDYAEPVKKSLK 234

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254   323 KLKIGYYVDDGWFTPTPVCQRAVMEAKQILEDSGHTLVPFRPPRVPEVLRMFLRAVCVDAGTFLSKKLMNDIidpllYTQ 402
Cdd:pfam01425 235 GLRIGVYREDGYFDLDPEVRRAVEEALAQLEALGHEVVEVDPPSLDYALPLYYLIAPAEASSNLARYDGVPS-----GPD 309

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254   403 VVLWMVPVPIQRFLSSIIKVFFPRLGNLMDAMTLSTVeLRNTYADIEAYRSEMAGLMvdQKIDALLCPVTVSPALPHVSP 482
Cdd:pfam01425 310 DLSELYPRTRAEGLGDEVKRRIILGNYALSAGYYDKY-YLKAQKVRRLIRREFAGLF--EELDVLLSPTAPTPAPRLGEP 386

                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 17538254   483 SKlfagtSYTGIFNLLDYAAGSVNVTHVTKQDE-LDLEDYEEsdpwyalakkgsrgtiGFPIGVQVATPPYKEETCL 558
Cdd:pfam01425 387 DD-----SPLVMYNLDDFTAGVVPVNLAGLPAIsLPAGFTAD----------------GLPVGVQIIGKPGDEETLL 442
Periplasmic_Binding_Protein_Type_2 super family cl21456
Type 2 periplasmic binding fold superfamily; This evolutionary model and hierarchy represent ...
 46-115 4.21e-03

Type 2 periplasmic binding fold superfamily; This evolutionary model and hierarchy represent the ligand-binding domains found in solute binding proteins that serve as initial receptors in the transport, signal transduction and channel gating. The PBP2 proteins share the same architecture as periplasmic binding proteins type 1 (PBP1), but have a different topology. They are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The origin of PBP module can be traced across the distant phyla, including eukaryotes, archebacteria, and prokaryotes. The majority of PBP2 proteins are involved in the uptake of a variety of soluble substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the family includes ionotropic glutamate receptors and unorthodox sensor proteins involved in signal transduction. The substrate binding domain of the LysR transcriptional regulators and the oligopeptide-like transport systems also contain the type 2 periplasmic binding fold and thus they are significantly homologous to that of the PBP2; however, these two families are grouped into a separate hierarchy of the PBP2 superfamily due to the large number of protein sequences.


The actual alignment was detected with superfamily member cd13627:

Pssm-ID: 473866 [Multi-domain]  Cd Length: 243  Bit Score: 39.31  E-value: 4.21e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 17538254  46 VKFAKESSEKLDKEtrLKIAAMEYSELKDGLQSGKITCIDAVRTyyakAISANEKT---------NSVCMFVKEAEKWA 115
Cdd:cd13627  40 VQIAKKLAEKLDMK--LVIKKIEWNGLIPALNSGDIDLIIAGMS----KTPEREKTidfsdpyyiSNIVMVVKKDSAYA 112
 
Name Accession Description Interval E-value
Amidase pfam01425
Amidase;
85-558 1.23e-148

Amidase;


Pssm-ID: 396144 [Multi-domain]  Cd Length: 442  Bit Score: 434.81  E-value: 1.23e-148
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254    85 DAVRTYYAKAISANEKTNS-VCMFVKEAEKWAMDWDEKAKDPQfQKPPLFGLPMSLKECVPLEGYDQTRGFVQDTFRPTE 163
Cdd:pfam01425   1 ELVEAFLDRIEAANPKLNAfVTVFFDEALAQAAAADKQRAAGD-PKGPLHGVPIAVKDNIDVKGVPTTAGSKALENYPAP 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254   164 TDGVLVQQLKKLGAIPYVQTNVPQSLLSYNCSNPVYGTTNHPMDKTRTSGGSSGGESALISADGSLLGIGGDVGGSIRIP 243
Cdd:pfam01425  80 YDATVVERLRKAGAVILGKTNMDEFAMGSSTENSVFGPTRNPWDLSRTPGGSSGGSAAAVAAGLVPLAIGTDTGGSIRIP 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254   244 CAYTGTTGIKPSHLRFSHRGVCgsvpGRPLINSNDGPMSTRVETNVDFLRTVWA-DTWITEQDPYvPPVTWNEEAYKSDK 322
Cdd:pfam01425 160 ASFCGLVGLKPTYGRVSRYGVV----GYASSLDQVGPLARSVEDAALLLRVISGyDPKDSTSLPP-PVPDYAEPVKKSLK 234

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254   323 KLKIGYYVDDGWFTPTPVCQRAVMEAKQILEDSGHTLVPFRPPRVPEVLRMFLRAVCVDAGTFLSKKLMNDIidpllYTQ 402
Cdd:pfam01425 235 GLRIGVYREDGYFDLDPEVRRAVEEALAQLEALGHEVVEVDPPSLDYALPLYYLIAPAEASSNLARYDGVPS-----GPD 309

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254   403 VVLWMVPVPIQRFLSSIIKVFFPRLGNLMDAMTLSTVeLRNTYADIEAYRSEMAGLMvdQKIDALLCPVTVSPALPHVSP 482
Cdd:pfam01425 310 DLSELYPRTRAEGLGDEVKRRIILGNYALSAGYYDKY-YLKAQKVRRLIRREFAGLF--EELDVLLSPTAPTPAPRLGEP 386

                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 17538254   483 SKlfagtSYTGIFNLLDYAAGSVNVTHVTKQDE-LDLEDYEEsdpwyalakkgsrgtiGFPIGVQVATPPYKEETCL 558
Cdd:pfam01425 387 DD-----SPLVMYNLDDFTAGVVPVNLAGLPAIsLPAGFTAD----------------GLPVGVQIIGKPGDEETLL 442
GatA COG0154
Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase [Translation, ribosomal ...
 70-566 5.59e-58

Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase [Translation, ribosomal structure and biogenesis]; Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases


Pssm-ID: 439924 [Multi-domain]  Cd Length: 468  Bit Score: 200.76  E-value: 5.59e-58
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  70 SELKDGLQSGKITCIDAVRTYYAKAISANEKTNSVCMFVKE-AEKWAMDWDEKAKDPQfQKPPLFGLPMSLKECVPLEGY 148
Cdd:COG0154  10 AELAAALRAGEVSAVELVEAALARIEAVNPALNAFVTVDAErALAEARAADARRAAGE-ALGPLAGVPVAVKDLIDVAGL 88

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254 149 DQTRGF-VQDTFRPTEtDGVLVQQLKKLGAIPYVQTNVPQSLLSYNCSNPVYGTTNHPMDKTRTsggssggesALISADG 227
Cdd:COG0154  89 PTTAGSkALADFVPPY-DATVVARLRAAGAVILGKTNMPEFAMGGSTENSAYGPTRNPWDPDRTpggssggsaAAVAAGL 167

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254 228 SLLGIGGDVGGSIRIPCAYTGTTGIKPSHLRFSHRGVcgsvpgRPLINSND--GPMStrvetnvdflRTVwADTWI---- 301
Cdd:COG0154 168 VPLALGSDTGGSIRIPAAFCGLVGLKPTYGRVSRYGV------VPLASSLDqvGPLA----------RTV-ADAALlldv 230

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254 302 ----TEQDPY---VPPVTWNEEAYKSDKKLKIGYYVDDGWFTPT-PVCQRAVMEAKQILEDSGHTLVPFRPPRVPEVLRM 373
Cdd:COG0154 231 lagpDPRDPTsapAPVPDYLAALDRDLKGLRIGVPREYFGGDGVdPEVAAAVEAAAAALEALGAEVVEVDLPDLDEALAA 310

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254 374 FLRAVCVDAGTFLSKKLMNdiiDPLLYTQVVLWMvpvpiqrflssiikvffprlgnLMDAMTLSTVELRNTYADIEAYRS 453
Cdd:COG0154 311 YYTIAAAEAAANLADLLRT---RPEGFGPEVRRR----------------------ILLGAYYSAADYLKAQRVRALLRR 365

                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254 454 EMAGLMvdQKIDALLCPVTVSPALPH------VSP--SKLFAGTSYTGIFNLLDYAAGSVNVtHVTKQdeldledyeesd 525
Cdd:COG0154 366 DFAAAF--EDYDVLLTPTTPTPAPPIgeldadIDPalAMNYLLDRFTAPANLAGLPALSVPA-GFTAD------------ 430

                       490       500       510       520
                ....*....|....*....|....*....|....*....|.
gi 17538254 526 pwyalakkgsrgtiGFPIGVQVATPPYKEETCLRIMREIER 566
Cdd:COG0154 431 --------------GLPVGLQLIGPPGDEATLLRLAAALEQ 457
PRK06170 PRK06170
amidase; Provisional
 65-281 8.49e-25

amidase; Provisional


Pssm-ID: 235723 [Multi-domain]  Cd Length: 490  Bit Score: 107.81  E-value: 8.49e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254   65 AAMEYS-----ELKDGLQSGKITCIDAVRTYYAKAISANEKTNSVCMFVKEAEKWAmdwdEKAKDPQF---QKPPLFGLP 136
Cdd:PRK06170   5 AADEWSflpatELAAALAAGEVSSVELTDLAIARIERHDGKINAIVVRDFDRARAA----ARAADAARargERGPLLGIP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  137 MSLKECVPLEGYDQTRGFV-QDTFRPTEtDGVLVQQLKKLGAIPYVQTNVPQSLLSYNCSNPVYGTTNHPMDKTRTSGGS 215
Cdd:PRK06170  81 VTVKESFNVAGLPTTWGFPdLRDYVPAE-DAVAVARLKAAGAVILGKTNVPLGLQDWQSYNEIYGTTNNPWDLARTPGGS 159

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  216 SGGESALISADGSLLGIGGDVGGSIRIPCAYTGTTGIKPSHLRFSHRGVcGSVPGRPLINSND----GPM 281
Cdd:PRK06170 160 SGGSAAALAAGFGALSIGSDIGGSLRVPAHYCGVYAHKPTLGLVPLRGH-IPPPAPALPGQADlavaGPM 228
PBP2_AA_binding_like_2 cd13627
Substrate-binding domain of putative amino acid-binding protein; the type 2 ...
 46-115 4.21e-03

Substrate-binding domain of putative amino acid-binding protein; the type 2 periplasmic-binding protein fold; This putative amino acid-binding protein belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.


Pssm-ID: 270345 [Multi-domain]  Cd Length: 243  Bit Score: 39.31  E-value: 4.21e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 17538254  46 VKFAKESSEKLDKEtrLKIAAMEYSELKDGLQSGKITCIDAVRTyyakAISANEKT---------NSVCMFVKEAEKWA 115
Cdd:cd13627  40 VQIAKKLAEKLDMK--LVIKKIEWNGLIPALNSGDIDLIIAGMS----KTPEREKTidfsdpyyiSNIVMVVKKDSAYA 112
 
Name Accession Description Interval E-value
Amidase pfam01425
Amidase;
85-558 1.23e-148

Amidase;


Pssm-ID: 396144 [Multi-domain]  Cd Length: 442  Bit Score: 434.81  E-value: 1.23e-148
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254    85 DAVRTYYAKAISANEKTNS-VCMFVKEAEKWAMDWDEKAKDPQfQKPPLFGLPMSLKECVPLEGYDQTRGFVQDTFRPTE 163
Cdd:pfam01425   1 ELVEAFLDRIEAANPKLNAfVTVFFDEALAQAAAADKQRAAGD-PKGPLHGVPIAVKDNIDVKGVPTTAGSKALENYPAP 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254   164 TDGVLVQQLKKLGAIPYVQTNVPQSLLSYNCSNPVYGTTNHPMDKTRTSGGSSGGESALISADGSLLGIGGDVGGSIRIP 243
Cdd:pfam01425  80 YDATVVERLRKAGAVILGKTNMDEFAMGSSTENSVFGPTRNPWDLSRTPGGSSGGSAAAVAAGLVPLAIGTDTGGSIRIP 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254   244 CAYTGTTGIKPSHLRFSHRGVCgsvpGRPLINSNDGPMSTRVETNVDFLRTVWA-DTWITEQDPYvPPVTWNEEAYKSDK 322
Cdd:pfam01425 160 ASFCGLVGLKPTYGRVSRYGVV----GYASSLDQVGPLARSVEDAALLLRVISGyDPKDSTSLPP-PVPDYAEPVKKSLK 234

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254   323 KLKIGYYVDDGWFTPTPVCQRAVMEAKQILEDSGHTLVPFRPPRVPEVLRMFLRAVCVDAGTFLSKKLMNDIidpllYTQ 402
Cdd:pfam01425 235 GLRIGVYREDGYFDLDPEVRRAVEEALAQLEALGHEVVEVDPPSLDYALPLYYLIAPAEASSNLARYDGVPS-----GPD 309

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254   403 VVLWMVPVPIQRFLSSIIKVFFPRLGNLMDAMTLSTVeLRNTYADIEAYRSEMAGLMvdQKIDALLCPVTVSPALPHVSP 482
Cdd:pfam01425 310 DLSELYPRTRAEGLGDEVKRRIILGNYALSAGYYDKY-YLKAQKVRRLIRREFAGLF--EELDVLLSPTAPTPAPRLGEP 386

                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 17538254   483 SKlfagtSYTGIFNLLDYAAGSVNVTHVTKQDE-LDLEDYEEsdpwyalakkgsrgtiGFPIGVQVATPPYKEETCL 558
Cdd:pfam01425 387 DD-----SPLVMYNLDDFTAGVVPVNLAGLPAIsLPAGFTAD----------------GLPVGVQIIGKPGDEETLL 442
GatA COG0154
Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase [Translation, ribosomal ...
 70-566 5.59e-58

Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase [Translation, ribosomal structure and biogenesis]; Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases


Pssm-ID: 439924 [Multi-domain]  Cd Length: 468  Bit Score: 200.76  E-value: 5.59e-58
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  70 SELKDGLQSGKITCIDAVRTYYAKAISANEKTNSVCMFVKE-AEKWAMDWDEKAKDPQfQKPPLFGLPMSLKECVPLEGY 148
Cdd:COG0154  10 AELAAALRAGEVSAVELVEAALARIEAVNPALNAFVTVDAErALAEARAADARRAAGE-ALGPLAGVPVAVKDLIDVAGL 88

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254 149 DQTRGF-VQDTFRPTEtDGVLVQQLKKLGAIPYVQTNVPQSLLSYNCSNPVYGTTNHPMDKTRTsggssggesALISADG 227
Cdd:COG0154  89 PTTAGSkALADFVPPY-DATVVARLRAAGAVILGKTNMPEFAMGGSTENSAYGPTRNPWDPDRTpggssggsaAAVAAGL 167

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254 228 SLLGIGGDVGGSIRIPCAYTGTTGIKPSHLRFSHRGVcgsvpgRPLINSND--GPMStrvetnvdflRTVwADTWI---- 301
Cdd:COG0154 168 VPLALGSDTGGSIRIPAAFCGLVGLKPTYGRVSRYGV------VPLASSLDqvGPLA----------RTV-ADAALlldv 230

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254 302 ----TEQDPY---VPPVTWNEEAYKSDKKLKIGYYVDDGWFTPT-PVCQRAVMEAKQILEDSGHTLVPFRPPRVPEVLRM 373
Cdd:COG0154 231 lagpDPRDPTsapAPVPDYLAALDRDLKGLRIGVPREYFGGDGVdPEVAAAVEAAAAALEALGAEVVEVDLPDLDEALAA 310

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254 374 FLRAVCVDAGTFLSKKLMNdiiDPLLYTQVVLWMvpvpiqrflssiikvffprlgnLMDAMTLSTVELRNTYADIEAYRS 453
Cdd:COG0154 311 YYTIAAAEAAANLADLLRT---RPEGFGPEVRRR----------------------ILLGAYYSAADYLKAQRVRALLRR 365

                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254 454 EMAGLMvdQKIDALLCPVTVSPALPH------VSP--SKLFAGTSYTGIFNLLDYAAGSVNVtHVTKQdeldledyeesd 525
Cdd:COG0154 366 DFAAAF--EDYDVLLTPTTPTPAPPIgeldadIDPalAMNYLLDRFTAPANLAGLPALSVPA-GFTAD------------ 430

                       490       500       510       520
                ....*....|....*....|....*....|....*....|.
gi 17538254 526 pwyalakkgsrgtiGFPIGVQVATPPYKEETCLRIMREIER 566
Cdd:COG0154 431 --------------GLPVGLQLIGPPGDEATLLRLAAALEQ 457
PRK06170 PRK06170
amidase; Provisional
 65-281 8.49e-25

amidase; Provisional


Pssm-ID: 235723 [Multi-domain]  Cd Length: 490  Bit Score: 107.81  E-value: 8.49e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254   65 AAMEYS-----ELKDGLQSGKITCIDAVRTYYAKAISANEKTNSVCMFVKEAEKWAmdwdEKAKDPQF---QKPPLFGLP 136
Cdd:PRK06170   5 AADEWSflpatELAAALAAGEVSSVELTDLAIARIERHDGKINAIVVRDFDRARAA----ARAADAARargERGPLLGIP 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  137 MSLKECVPLEGYDQTRGFV-QDTFRPTEtDGVLVQQLKKLGAIPYVQTNVPQSLLSYNCSNPVYGTTNHPMDKTRTSGGS 215
Cdd:PRK06170  81 VTVKESFNVAGLPTTWGFPdLRDYVPAE-DAVAVARLKAAGAVILGKTNVPLGLQDWQSYNEIYGTTNNPWDLARTPGGS 159

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  216 SGGESALISADGSLLGIGGDVGGSIRIPCAYTGTTGIKPSHLRFSHRGVcGSVPGRPLINSND----GPM 281
Cdd:PRK06170 160 SGGSAAALAAGFGALSIGSDIGGSLRVPAHYCGVYAHKPTLGLVPLRGH-IPPPAPALPGQADlavaGPM 228
PRK07488 PRK07488
indoleacetamide hydrolase;
59-478 1.67e-19

indoleacetamide hydrolase;


Pssm-ID: 236030 [Multi-domain]  Cd Length: 472  Bit Score: 91.57  E-value: 1.67e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254   59 ETRLKIAAMEYSELKDGLQSGKITCIDAVRTYYAKAISANEKTNSVCMFVKEAEKWAMDWDekAKDPQFQKPPLFGLPMS 138
Cdd:PRK07488   3 HRDPDVASLSLTEAAAALRSGRLSCLELVEALLARAAALAPLNAFTTVDAEGALAAARRID--AQRAAGAALLLAGVPIV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  139 LKECVPLEGYDQTRGfvqdT-----FRPTeTDGVLVQQLKKLGAIPYVQTNVPQslLSYNCS--NPVYGTTNHPMDKTRT 211
Cdd:PRK07488  81 IKDNINTAGMPTTAG----TpallgFVPA-TDAPVVQRLLDAGAVPLGKANMHE--LAFGITsnNGAFGAVRNPYDPARI 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  212 SGGSSGGESALISADGSLLGIGGDVGGSIRIPCAYTGTTGIKPSHLRFSHRGVCgsvpgrPLINSND--GPMSTRVEtNV 289
Cdd:PRK07488 154 AGGSSGGTAAAVAARLAPAGLGTDTGGSVRIPAALCGVVGLRPTVGRYSGDGVV------PISHTRDtvGPIARSVA-DL 226

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  290 DFLrtvwaDTWITEQDPYVPPVTWneeayksdKKLKIGyyVDDGWF------TPTPVCQRAVMEakqiLEDSGHTLVPFR 363
Cdd:PRK07488 227 ALL-----DAVITGDAALPAPVAL--------AGLRLG--VPAAPFwdgldpDVAAVAEAALAK----LAAAGVTFVELD 287

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  364 PPRVPEVLRMFlrAVCVDAGTFLSkklmnDIIDPLlytqvVLWMVPVPIQRFLSSIIKvffPRLGNLMDAMTLSTVELRN 443
Cdd:PRK07488 288 LPGLHELNEAV--GFPIALYEALA-----DLRAYL-----RENGAGVSFEELVARIAS---PDVRAIFRDLLDPPQISED 352

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|
gi 17538254  444 TYAD-IEAYRSEMAGLMVD----QKIDALLCPVTVSPALP 478
Cdd:PRK07488 353 AYRAaLDVGRPRLQAWYRQafarHGLDAILFPTTPLTAPP 392
PRK06169 PRK06169
putative amidase; Provisional
 64-566 1.98e-19

putative amidase; Provisional


Pssm-ID: 180437 [Multi-domain]  Cd Length: 466  Bit Score: 91.24  E-value: 1.98e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254   64 IAAMEYSELKDGLQSGKITCIDAVRTYYAKAISANEKTNSVCMF-----VKEAEKWAMDWDEKAkdpqfQKPPLFGLPMS 138
Cdd:PRK06169   4 LADLTAVELLAAYRRGELSPVEATQAVLDRIDRRDPAVNAFCLVdaegaLAAARASEERWRRGE-----PCGLLDGVPVS 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  139 LKECVPLEGYDQTRGFVQ-DTFRPTETDGVLVQQLKKLGAIPYVQTNVPQSLLSYNCSNPVYGTTNHPMDKTRTSGGSSG 217
Cdd:PRK06169  79 IKDIFLTRGWPTLRGSRAiDADGPWDVDAPAVARLREAGAVLLGKTTTPEFGWKGVTDSPLYGITRNPWDTRLTAGGSSG 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  218 GESALISADGSLLGIGGDVGGSIRIPCAYTGTTGIKPSHlrfshrgvcGSVPGRP----LINSNDGPMSTRVETNVDFLR 293
Cdd:PRK06169 159 GAAAAVALGMGPLSVGTDGGGSVRIPASFCGTFGFKPTF---------GRVPLYPaspfGTLAHVGPMTRTVADAALLLD 229

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  294 TvwadtwITEQDP------YVPPVTWNEEAYKSDKKLKIGYYVDDGWFTPTPVCQRAVMEAKQILEDSGHTLVPFRPPrv 367
Cdd:PRK06169 230 V------IARPDArdwsalPPPTTSFLDALDRDVRGLRIAYSPTLGYVDVDPEVAALVAQAVQRLAALGARVEEVDPG-- 301

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  368 pevlrmflravcvdagtflskklmndIIDPlLYTQVVLWMVPVpiQRFLSSiikvFFPRLGNLMDAMTLSTVELRNT--- 444
Cdd:PRK06169 302 --------------------------FSDP-VEAFHVLWFAGA--ARLLRA----LPPGQRALLDPGLRRIAERGATysa 348

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  445 --YADIEAYRSEMAGLM--VDQKIDALLCPVTVSPALP--HVSP--SKLFAGTSYTGI---FNLLDYAAGSVNVThVTKQ 513
Cdd:PRK06169 349 sdYLDATAVRAALGARMgaFHERYDLLLTPTLPIPAFEagHDVPpgSGLTDWTQWTPFtypFNLTQQPAASVPCG-FTAA 427

                        490       500       510       520       530
                 ....*....|....*....|....*....|....*....|....*....|...
gi 17538254  514 deldledyeesdpwyalakkgsrgtiGFPIGVQVATPPYKEETCLRIMREIER 566
Cdd:PRK06169 428 --------------------------GLPVGLQIVGPRHSDDLVLRVARAYEQ 454
PRK12470 PRK12470
amidase; Provisional
 131-382 6.96e-19

amidase; Provisional


Pssm-ID: 171524 [Multi-domain]  Cd Length: 462  Bit Score: 89.56  E-value: 6.96e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  131 PLFGLPMSLKECVPLEGYDQTRGFVQDTfRPTETDGVLVQQLKKLGAIPYVQTNVPQSLLSYNCSNPVYGTTNHPMDKTR 210
Cdd:PRK12470  72 PLLGVPIAIKDDVDVAGEVTTYGSAGHG-PAATSDAEVVRRLRAAGAVIIGKTNVPELMIMPFTESLAFGATRNPWDPNR 150

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  211 TSGGSSGGESALISADGSLLGIGGDVGGSIRIPCAYTGTTGIKPSHLRFS---HRGVCGSVpgrplinSNDGPMSTRVET 287
Cdd:PRK12470 151 TPGGSSGGSAAAVAAGLAPVALGSDGGGSIRIPSTWCGLFGLKPQRDRISlepHDGAWQGL-------SVNGPIARSVMD 223

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  288 NVDFLrtvwaDTWITEQDPYVPPVtwnEEAYKSDKKLKIGYYVDdgwfTPTPVCQR-------AVMEAKQILEDSGHTLV 360
Cdd:PRK12470 224 AALLL-----DATTTVPGPEGEFV---AAAAREPGRLRIALSTR----VPTPLPVRcgkqelaAVHQAGALLRDLGHDVV 291

                        250       260
                 ....*....|....*....|....*..
gi 17538254  361 PfRPPRVPEV-----LRMFLRAVCVDA 382
Cdd:PRK12470 292 V-RDPDYPAAtyanyLPRFFRGISDDA 317
PRK06529 PRK06529
amidase; Provisional
 70-565 4.12e-18

amidase; Provisional


Pssm-ID: 180608 [Multi-domain]  Cd Length: 482  Bit Score: 87.18  E-value: 4.12e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254   70 SELKDGLQSGKITCIDAVRTYYAKAISANEKTNSVcmfVKEAEKWAMdwdEKAKDPQFQKPPLFGLPMSLKEC-VPLEGY 148
Cdd:PRK06529   7 TAMAQAVQQGQVTPLELVTQAIYKAKKLNPTLNAI---VSERYEEAL---EEAKQRDFSGKPFAGVPIFLKDLgQELKGQ 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  149 DQTRG--FVQDtFRPTETDgVLVQQLKKLGAIPYVQTNVPQSLLSYNCSNPVYGTTNHPMDKTRTSGGSSGGESALISAD 226
Cdd:PRK06529  81 LSTSGsrLFKN-YQATKTD-LYVKRLEDLGFIILGRSNTPEFGFKNISDSSLHGPVNLPFDNSRNAGGSSGGAAALVSSG 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  227 GSLLGIGGDVGGSIRIPCAYTGTTGIKPSHlrfshrgvcGSVPgrplinsnDGPMSTR----VETNVDFLRTVwADT--- 299
Cdd:PRK06529 159 IVALAAASDGGGSIRIPASFNGLIGLKPSR---------GRIP--------VGPGSYRgwqgASVHFALTKSV-RDTrrl 220

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  300 ---WITEQ--DPYVPPVTWNEEAYKS-DKKLKIGYYVDDGWFTPTPV-CQRAVMEAKQILEDSGHTLVPFR--PPRVPEV 370
Cdd:PRK06529 221 lyyLQMYQmeSPFPLATLSKESLFQSlQRPLKIAFYQRSPDGSPVSLdAAKALKQAVTFLREQGHEVVELEefPLDMTEV 300

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  371 LRMFLRAVCVDAGTflskklMNDIIDPLLYTQVVLwmvpvpiqrflssiikvffprlgNLMDAMTLSTVE-----LRNTY 445
Cdd:PRK06529 301 MRSYYIMNSVETAA------MFDDIEDALGRPMTK-----------------------DDMETMTWAIYQsgqdiPAKRY 351

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  446 ADI----EAYRSEMAGLMvdQKIDALLCPVTVSPALPH---VSPSKLFAGTSYTGIFNlldyaagsvnvthVTKQDELDL 518
Cdd:PRK06529 352 SQVlqkwDTYSATMASFH--ETYDLLLTFTTNTPAPKHgqlDPDSKLMANLAQAEIFS-------------SEEQQNLVE 416

                        490       500       510       520       530
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 17538254  519 EDYEES---DPWYALAKKGSRGTI---------GFPIGVQVATPPYKEETCLRIMREIE 565
Cdd:PRK06529 417 TMFEKSlaiTPYTALANLTGQPAIslptyetkeGLPMGVQLIAAKGREDLLLGIAEQFE 475
PRK07486 PRK07486
amidase; Provisional
 64-377 9.42e-17

amidase; Provisional


Pssm-ID: 236028 [Multi-domain]  Cd Length: 484  Bit Score: 83.14  E-value: 9.42e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254   64 IAAMEYSELKDGLQSGKITCIDAVRTYYAKAISANEKTNSVcmfVKEAEKWAMDWDEKAKDPQFQKP----PLFGLPMSL 139
Cdd:PRK07486   9 IVRLSAHALSRAIRRRQVSCVEVMRAYLAHIERVNPAVNAI---VALRDRDALLAEAAEKDAALARGeyrgWLHGMPQAP 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  140 KECVPLEGYDQT------RGFVqdtfrpTETDGVLVQQLKKLGAIPYVQTNVPQSLLSYNCSNPVYGTTNHPMDKTRTSG 213
Cdd:PRK07486  86 KDLAPTKGIRTTlgspifADQV------PQEDAIVVERMRAAGAIFIGKTNTPEFGLGSHTYNPVYGATRNPYDPSRSAG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  214 GSSGGESA------LISADGSllgiggDVGGSIRIPCAYTGTTGIKPSHlrfshrgvcGSVPGRPLIN------SNDGPM 281
Cdd:PRK07486 160 GSSGGAAAalalrmLPVADGS------DMMGSLRNPAAFNNVYGFRPSQ---------GRVPHGPGGDvfvqqlGTEGPM 224

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  282 STRVEtNVDFLRTVWAdtwitEQDPYVP------PVTWNEEAYKSDKKLKIGYYVDDGWFTPT-----PVCQRAVmeakQ 350
Cdd:PRK07486 225 GRTVE-DVALLLAVQA-----GYDPRDPlslaedPARFAQPLEADLRGKRIAWLGDWGGYLPMeagvlELCEAAL----A 294

                        330       340       350
                 ....*....|....*....|....*....|....
gi 17538254  351 ILEDSGHTLVPFRPPRVPE-------VLRMFLRA 377
Cdd:PRK07486 295 TLRELGCDVEAALPAFPPErlwrawlTLRHFLVG 328
PRK07869 PRK07869
amidase; Provisional
 71-565 4.09e-14

amidase; Provisional


Pssm-ID: 181154 [Multi-domain]  Cd Length: 468  Bit Score: 74.64  E-value: 4.09e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254   71 ELKDGLQSGKITCIDAVRTYYAKAISANEKTNSVcmfVKEAEKWAMdwdEKAKDPQFQKPPLFGLPMSLKECVPLEGYDQ 150
Cdd:PRK07869  19 GLAEAIRAGRVSAAEVVEAAIARAEAVNPALNAL---AYAAFDRAR---DRAARPGSQGGFFSGVPTFIKDNVDVAGLPT 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  151 TRGFVQDTFRPTETDGVLVQQLKKLGAIPYVQTNVPQSLLSYNCSNPVYGTTNHPMDKTRTSGGSSGGESALISADGSLL 230
Cdd:PRK07869  93 MHGSDAWTPRPAKADSDFARQFLATGLISLGKTQLPEFGFSASTEHPRLGPVRNPWNTDYSAGASSGGSAALVAAGVVPI 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  231 GIGGDVGGSIRIPCAYTGTTGIKPSHlrfshrgvcgsvpGRPLINSNDGPMSTRVETNVDFLRTVwADT--WITE----- 303
Cdd:PRK07869 173 AHANDGGGSIRIPAACCGLVGLKPSR-------------GRLPLDPELRRLPVNIVANGVLTRTV-RDTaaFYREaeryy 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  304 QDPYVPPVtwNEEAYKSDKKLKIGYYVDDGWFTPT-PVCQRAVMEAKQILEDSGHTLVPFRPPrvpeVLRMFlravcvda 382
Cdd:PRK07869 239 RNPKLPPI--GDVTGPGKQRLRIAVVTDSVTGREAdPEVREAVLATARLLEELGHRVEPVDLP----VPASF-------- 304

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  383 gtflskklmndIIDPLLYtqvvlWMvpvpiqrFLSSIIKVFFPRL------GNLMDAMT--LSTVELRNTY------ADI 448
Cdd:PRK07869 305 -----------VDDFLLY-----WG-------FLAFALVRGGRRTfgpsfdRTRLDNLTlgLARHARRNLHrlplaiARL 361

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  449 EAYRSEMAGLMvdQKIDALLCPVT--VSPALPHVSPSklfagTSYTGIFN-LLDYAAGSV--NVThvtkqdeldledyee 523
Cdd:PRK07869 362 RRLRRVYARFF--GTYDVVLTPTLahTTPEIGYLDPT-----QDFDTVLDrLISYVAFTPlqNAT--------------- 419

                        490       500       510       520
                 ....*....|....*....|....*....|....*....|..
gi 17538254  524 SDPwyALAKKGSRGTIGFPIGVQVATPPYKEETCLRIMREIE 565
Cdd:PRK07869 420 GEP--AISLPLGQSSDGLPVGMMFSADVGDEATLLELAYELE 459
PRK07487 PRK07487
amidase; Provisional
 70-567 2.68e-13

amidase; Provisional


Pssm-ID: 236029 [Multi-domain]  Cd Length: 469  Bit Score: 72.31  E-value: 2.68e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254   70 SELKDGLQSGKITCIDAVRTYYAKAISANEKTNSVCMFVKEAEKWAMDwdekAKDPQFQKP----PLFGLPMSLKECVPL 145
Cdd:PRK07487  11 AELAAAVRSRDVSAREAAEAALARLDAVNPAINAVVDHRPEEALAQAD----AVDAARARGddpgPLAGVPVTVKVNVDQ 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  146 EGYDQTRGFVQDTFRPTETDGVLVQQLKKLGAIPYVQTNVPQSLLSYNCSNPVYGTTNHPMDKTRTSGGSSGGESALISA 225
Cdd:PRK07487  87 AGFATTNGVRLQKDLIAPADSPVVDNLRKAGAVIIGRTNTPAFSYRWFTDNPLHGRTLNPWDPSLTPGGSSGGAAAAVAA 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  226 DGSLLGIGGDVGGSIRIPCAYTGTTGIKPSHLRFShrGVCGSVPGRPL---INSNDGPMStrvetnvdflRTVwADTWIT 302
Cdd:PRK07487 167 GIGAIAHGTDIGGSIRYPAYACGVHGLRPTLGRVP--AYNASSPERPIgaqLMSVQGPLA----------RTV-ADLRLA 233

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  303 --------EQDPYVPPVTWNeeayKSDKKLKIGYYVDDGWFTPTPVCQRAVMEAKQILEDSGHTL--VPfRPPRVPEVLR 372
Cdd:PRK07487 234 laamaapdPRDPWWVPAPLE----GPPRPKRVALCVRPDGLDVDPEVEAALRDAARRLEDAGWTVeeVD-DTPPLREAAE 308

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  373 MFLRAVcvdagtflskklMNDIIDPLLYTqvvlwmvpvpIQRFLSSIIKVFFPRLGNLMDAMTLStvelrnTYADIEAYR 452
Cdd:PRK07487 309 LQERLW------------LGDGYEALLAA----------AEAEGDPGALAALRGQRAKARPLDLA------GYMNALARR 360

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  453 SEMAG----LMVDQKIdaLLCPVTVSPALPhvspsklfagtsytgifnlldyaagsvnvthvtkqDELDLEDYEESD--- 525
Cdd:PRK07487 361 ATLTRqwqlFFEDYPL--LLMPVSAELPFP-----------------------------------DDLDRQGAEGFRrvw 403

                        490       500       510       520       530
                 ....*....|....*....|....*....|....*....|....*....|...
gi 17538254  526 ----PWYALAKKGSRGTI-------GFPIGVQVATPPYKEETCLRIMREIERG 567
Cdd:PRK07487 404 eaqlPQIALPFMGLPGLSvptglvgGVPVGVQLVAGRFREDLCLAAGEAIEAR 456
PRK07042 PRK07042
amidase; Provisional
 85-566 1.23e-12

amidase; Provisional


Pssm-ID: 235915 [Multi-domain]  Cd Length: 464  Bit Score: 70.00  E-value: 1.23e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254   85 DAVRTYYAKAISANEKTNSVCMFVKEAEK-----WAMDWDE-----KAKDPQFQK--P--PLFGLPMSLKECVPLEGYDQ 150
Cdd:PRK07042  11 ELLAGYRARSLSPVEVTEAVLAHIARWEPhlnalYAFDPEAaraaaRASTARWAKgePlgPLDGVPVTIKENIATRGVPV 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  151 TRGFVQDTFRPTETDGVLVQQLKKLGAIPYVQTNVPQ-SLLSYNCSNpVYGTTNHPMDKTRTSGGSSGGESALISADGSL 229
Cdd:PRK07042  91 PLGTAATDLPPAAADAPPAARLREAGAVILAKTTMPDyGMLSSGLSS-FHGLTRNPWDLDQNPGGSSAGAGAAAAAGYGP 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  230 LGIGGDVGGSIRIPCAYTGTTGIKPSHlrfshrgvcGSVP------GRPLinsndGPMSTRVETNVDFLRTVWADTWite 303
Cdd:PRK07042 170 LHLGTDIGGSVRLPAGWCGIVGLKPSL---------GRIPidppytGRCA-----GPMTRTVDDAALLMSVLSRPDA--- 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  304 QD----PYvPPVTWNEEAyKSDKKLKIGYYVDDGW-FTPTPVCQRAVMEAKQILEDSGHTLVPFRPprvpevlrmflrav 378
Cdd:PRK07042 233 RDgtslPP-QDIDWSDLD-IDVRGLRIGLMLDAGCgLAVDPEVRAAVEAAARRFEAAGAIVEPVPP-------------- 296

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  379 cvdagtFLSKKLMnDIIDpllytqvVLWMvpvpiQRFLSSIIKVFFPR----LGNLMD----AMTLSTVELRNTYADIEA 450
Cdd:PRK07042 297 ------FLTRAML-DGLD-------RFWR-----ARLWSDLAALPPERrakvLPYIRRwaegGADLSGVEAVRGFNQTFA 357

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  451 YRSEMAGLMvdQKIDALLCPVTVSPALPHVSPS------KLFAGTSYTGIFNLLDYAAGSVNVTHVTKqdeldledyees 524
Cdd:PRK07042 358 MRAAAARLF--AEFDYVLSPVAPVPAFPAEWASptndpaRPFEHIAFTVPWNMSEQPAASINCGFTRD------------ 423

                        490       500       510       520
                 ....*....|....*....|....*....|....*....|..
gi 17538254  525 dpwyalakkgsrgtiGFPIGVQVATPPYKEETCLRIMREIER 566
Cdd:PRK07042 424 ---------------GLPIGLQIVGPRFDDLGVLRLAKAFEG 450
PRK06061 PRK06061
amidase; Provisional
 131-365 2.01e-12

amidase; Provisional


Pssm-ID: 235686 [Multi-domain]  Cd Length: 483  Bit Score: 69.34  E-value: 2.01e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  131 PLFGLPMSLKECVPLEGyDQTRGFVQDTFRPTETDGVLVQQLKKLGAIPYVQTNVPQSLLSYNCSNPVYGTTNHPMDKTR 210
Cdd:PRK06061  81 PLLGVPIAVKDDVDVAG-VPTAFGTAGEVPPATADSEVVRRLRAAGAVIVGKTNTCELGQWPFTSGPAFGHTRNPWSRDH 159

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  211 TSGGSSGGESALISADGSLLGIGGDVGGSIRIPCAYTGTTGIKPshlrfsHRGVCGSVPGRPLIN--SNDGPMSTRVETN 288
Cdd:PRK06061 160 TPGGSSGGSAAAVAAGLVTAAIGSDGAGSVRIPAAWTHLVGIKP------QRGRISTWPLPEAFNglTVNGPLARTVADA 233

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  289 VDFLRTVWADTWITEQDPyvPPVTWNEEAYKSDKKLKIGYYVDDGwFTPT-----PVCQRAVMEAKQILEDSGHTLVPFR 363
Cdd:PRK06061 234 ALLLDAASGNHPGDRHRP--PPVTVSDAVGRAPGPLRIALSTRFP-FTGFpaklhPEIRAAVRRVAEQLALLGHTVVPAD 310


                 ..
gi 17538254  364 PP 365
Cdd:PRK06061 311 PD 312
PRK08137 PRK08137
amidase; Provisional
 71-361 3.13e-12

amidase; Provisional


Pssm-ID: 236161 [Multi-domain]  Cd Length: 497  Bit Score: 69.03  E-value: 3.13e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254   71 ELKDGLQSGKITCIDAVRTYY---AKAISANEKTNSVCMFVKEAEKWAMDWDEKAKDPQFqKPPLFGLPMSLKECV-PLE 146
Cdd:PRK08137  10 ALQAAMPAGAAPASQLTRAYLqriARIDRDGPRLNAVIELNPDAEADAAALDAERKAGKV-RGPLHGIPVLLKDNIdAAD 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  147 GYDQTRG-FVQDTFRPTEtDGVLVQQLKKLGAIPYVQTNVPQ-----SLLSYNCSNPVYGTTNHPMDKTRTSGGSSGGES 220
Cdd:PRK08137  89 PMPTTAGsLALAGNRPTR-DAFLVARLRDAGAVILGKANLSEwanfrSTRSSSGWSARGGLTRNPYALDRSPCGSSSGSG 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  221 ALISADGSLLGIGGDVGGSIRIPCAYTGTTGIKPSHLRFSHRGVCgsvpgrPLINSND--GPMSTRVETNVDFLrtvwad 298
Cdd:PRK08137 168 AAVAAGLAAVAIGTETDGSITCPAAINGLVGLKPTVGLVSRDGIV------PISHSQDtaGPMTRTVADAAAVL------ 235

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 17538254  299 TWITEQDPyVPPVTWNEEAYKSD----------KKLKIGyyVDDGWFTPTPVCQRAVMEAKQILEDSGHTLVP 361
Cdd:PRK08137 236 TAIAGGDP-ADPATASAPAPAVDyvaaldadalRGARLG--VARNYLGYHPEVDAQFERALAELKAAGAVVID 305
PRK07056 PRK07056
amidase; Provisional
 115-285 2.03e-10

amidase; Provisional


Pssm-ID: 235921 [Multi-domain]  Cd Length: 454  Bit Score: 63.03  E-value: 2.03e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  115 AMDWDEKAKDPQFqkpPLFGLPMSLKECVPLEGyDQTRG--FVQDTFRPTETDGVLVQQLKKLGAIPYVQTNVPQSLLSY 192
Cdd:PRK07056  58 AADALRAAGAAPS---PLAGIPVSVKDLFDVAG-QVTRAgsRVLADAPPAAADAPAVARLRRAGAVLIGRTNMTEFAFSG 133

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  193 NCSNPVYGTTNHPMDKTRTSGGSS--GGESALIS-ADG-SLLGIGGDVGGSIRIPCAYTGTTGIKPSHLRFSHRGvcgsv 268
Cdd:PRK07056 134 LGLNPHYGTPRNPWRRDVGDGRIPggSSSGAAVSvADGmAAAALGTDTGGSIRIPAALCGLTGFKPTARRVPLQG----- 208

                        170
                 ....*....|....*....
gi 17538254  269 pGRPLINSND--GPMSTRV 285
Cdd:PRK07056 209 -AVPLSTTLDsiGPLARSV 226
PRK09201 PRK09201
AtzE family amidohydrolase;
65-286 2.06e-10

AtzE family amidohydrolase;


Pssm-ID: 236409 [Multi-domain]  Cd Length: 465  Bit Score: 63.06  E-value: 2.06e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254   65 AAMEYSELKDGLQSGKITCIDAVRTYYAKAISANEKTNSVCMFVKE---AEKWAMDWDEKAKDPQfqkPPLFGLPMSLKE 141
Cdd:PRK09201   5 SSLSAAEIAAAVRAGELSARAVAQATLARIARANPQLNAFTAVTAEralAEAARIDAARAAGEPL---GPLAGVPFAVKN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  142 CVPLEGYDQTRGFVQDTFRPTET-DGVLVQQLKKLGAIPYVQTNVPQSLLSYNCSNPVYGTTNHPMDKTRTSGGSSGGES 220
Cdd:PRK09201  82 LFDVAGLTTLAGSKINRDRPPATrDATAVRRLEAAGAVLVGALNMDEYAYGFTTENSHYGATRNPHDLTRIAGGSSGGSA 161

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 17538254  221 ALISADGSLLGIGGDVGGSIRIPCAYTGTTGIKPSHLRFSHRGVcgsvpgRPLINSND--GPMSTRVE 286
Cdd:PRK09201 162 AAVAAGLVPFTLGSDTNGSIRVPASLCGIFGLKPTYGRLSRAGS------FPFVASLDhiGPFARSVA 223
PRK06102 PRK06102
amidase;
131-298 1.04e-09

amidase;


Pssm-ID: 235698 [Multi-domain]  Cd Length: 452  Bit Score: 60.82  E-value: 1.04e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  131 PLFGLPMSLKECVPLEGYDQTRG-FVQDTFRPTETDGVLVQQLKKLGAIPYVQTNVPQSLLSYNCSNPVYGTTNHPM--D 207
Cdd:PRK06102  69 LLDGIPIAWKDLFDVAGSVTTAGsVVLANAAPASRDAAVVALLARAGMVSIGRTNMSEFAFSGLGLNPHYGTPVNPRstD 148

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  208 KTRTSGGSSGGESALISADGSLLGIGGDVGGSIRIPCAYTGTTGIKPSHLRFSHRGVCgsvpgrPLINSND--GPMSTRV 285
Cdd:PRK06102 149 VPRIPGGSSSGSAVAVAAGLVPVAMGTDTGGSVRIPAAFNGLVGYKATRGRYSMDGVF------PLAKSLDslGPLCRSV 222

                        170
                 ....*....|...
gi 17538254  286 ETnvdflrTVWAD 298
Cdd:PRK06102 223 RD------AVWID 229
PRK05962 PRK05962
amidase; Validated
 131-285 7.41e-08

amidase; Validated


Pssm-ID: 168315 [Multi-domain]  Cd Length: 424  Bit Score: 54.78  E-value: 7.41e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  131 PLFGLPMSLKECVPLEGYDQTRG-FVQDTFRPTETDGVLVQQLKKLGAIPYVQTNVPQSLLSYNCSNPVYGTTNHPMDKT 209
Cdd:PRK05962  45 PLDGRIVSIKDLFDVAGEPTLAGsVIRRDAPPAGADALIVQRLRNAGAVIIGKTHMTEFAFTPVGLNPHYGEPGNAIDPA 124

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 17538254  210 RTSGGSSGGESALISADGSLLGIGGDVGGSIRIPCAYTGTTGIKPSHLRFShrgVCGSVPGRPLINSNdGPMSTRV 285
Cdd:PRK05962 125 RIPGGSSSGAAVSVAEGTSEIAIGSDTGGSVRIPAALNGLVGFKPTARRIP---LEGAFPLSPSLDSI-GPLARTV 196
PRK06707 PRK06707
amidase; Provisional
 102-285 1.51e-07

amidase; Provisional


Pssm-ID: 235855 [Multi-domain]  Cd Length: 536  Bit Score: 54.15  E-value: 1.51e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  102 NSVCMFVKEAEKWAMDWDEKAKdpQFQKPPLFGLPMSLKECVPLEGYDQTRG--FVQDTFRPTEtDGVLVQQLKKLGAIP 179
Cdd:PRK06707 109 NSVTEINPNAMEEARKLDQERS--RNKKSNLYGIPVVVKDNVQTAKVMPTSAgtYVLKDWIADQ-DATIVKQLKEEGAFV 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  180 YVQTNVPQ--SLLSYNCS-----------NPvYGttnhPMdkTRTSGGSSGGESALISADGSLLGIGGDVGGSIRIPCAY 246
Cdd:PRK06707 186 LGKANMSEwaNYLSFTMPsgysgkkgqnlNP-YG----PI--KFDTSGSSSGSATVVAADFAPLAVGTETTGSIVAPAAQ 258

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 17538254  247 TGTTGIKPSHLRFSHRGVCgsvpgrPLINSND--GPMSTRV 285
Cdd:PRK06707 259 QSVVGLRPSLGMVSRTGII------PLAETLDtaGPMARTV 293
PRK07235 PRK07235
amidase; Provisional
 221-356 2.95e-07

amidase; Provisional


Pssm-ID: 235979 [Multi-domain]  Cd Length: 502  Bit Score: 53.08  E-value: 2.95e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  221 ALISADGSLLGIGGDVGGSIRIPCAYTGTTGIKPSHlrfshrgvcGSVP---GRPLINSND--GPMSTRVETNVDFLRTV 295
Cdd:PRK07235 177 ALVAAGEVDMAIGGDQGGSIRIPSAWCGIYGMKPTH---------GLVPytgAFPIERTIDhlGPMTATVRDNALLLEVI 247

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 17538254  296 WADTWITEQDPYVPPVTWNEEAYKSD-KKLKIGyYVDDG--WFTPTPVCQRAVMEAKQILEDSG 356
Cdd:PRK07235 248 AGRDGLDPRQPAQPPVDDYTAALDRGvKGLKIG-ILREGfgLPNSEPEVDEAVRAAAKRLEDLG 310
PLN02722 PLN02722
indole-3-acetamide amidohydrolase
 130-264 3.28e-07

indole-3-acetamide amidohydrolase


Pssm-ID: 166363  Cd Length: 422  Bit Score: 52.97  E-value: 3.28e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  130 PPLFGLPMSLKECVPLEGYdqTRGFVQDTFRPTETDGVL----VQQLKKLGAIPYVQTNVPQSLLSYNCSNPVYGTTNHP 205
Cdd:PLN02722  25 LPLHGLTFAVKDIFDVEGY--VTGFGNPDWARTHSAATStapaVLAVLRGGATCVGKTIMDEMAYSINGENAHYGTPTNP 102

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 17538254  206 MDKTRTSGGSSGGESALISADGSLLGIGGDVGGSIRIPCAYTGTTGIKPSHLRFSHRGV 264
Cdd:PLN02722 103 IAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHGAVSTVGV 161
PRK11910 PRK11910
amidase; Provisional
 84-302 8.40e-06

amidase; Provisional


Pssm-ID: 183377 [Multi-domain]  Cd Length: 615  Bit Score: 48.49  E-value: 8.40e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254   84 IDAVRTYYAKAISANEKTNSVCMFVKEAEKwaMDwdekaKDPQFQKPPLFGLPMSLKECVPLEGYDQTRGFVQDTFRPTE 163
Cdd:PRK11910 189 LNRIKKYDQNGLNLNAITEINPTIIAEAEQ--LD-----KENTTNKSALYGMPVLLKDNIGTKELPTSAGTVALKDWVIG 261

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  164 TDGVLVQQLKKLGAIPYVQTNVPQSLLSYNCSNP-----VYGTTNHPMDKTRTSGGSSGGESALISADGSLLGIGGDVGG 238
Cdd:PRK11910 262 KDATIVENLKANGALILGKTNMSEWAAGMDEDLPngysgKKGQSKNPYSSNLDPSGSSSGSATAATSDFAAIAIGTETNG 341

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 17538254  239 SIRIPCAYTGTTGIKPSHLRFSHRGVCgsvpgrplinsndgPMSTRVETNVDFLRTVwADTWIT 302
Cdd:PRK11910 342 SIITPASAQSAVGYKPSQGLVNNKGII--------------PLSSRFDTPGPLTRTV-NDAYLT 390
PRK06828 PRK06828
amidase; Provisional
 71-306 1.25e-05

amidase; Provisional


Pssm-ID: 180715 [Multi-domain]  Cd Length: 491  Bit Score: 47.89  E-value: 1.25e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254   71 ELKDGLQSGKITCIDAVRTYY---AKAISANEKTNSVC------MFVKEAekwaMDWDEKAKDPqfqKPPLFGLPMSLKE 141
Cdd:PRK06828  17 DIQTAMEDGKLTSKELVMYYLhriAKYDQDGPKINSILeinpdaIFIAEA----LDHERKIKGV---RGPLHGIPVLLKD 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  142 CVPLEGYDQTR-GFVQDTFRPTETDGVLVQQLKKLGAIPYVQTNVPQ--SLLSYNCS-----------NPvYGTTNHPMd 207
Cdd:PRK06828  90 NIETNDSMHTSaGTIALEQHISSEDAFLVTKLREAGAVILGKANMTElaNFMSFEMWagysarggqtiNP-YGTGEDDM- 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  208 ktrTSGGSSGGESALISADGSLLGIGGDVGGSIRIPCAYTGTTGIKPSHLRFSHRGVCgsvpgrPLINSND--GPMSTRV 285
Cdd:PRK06828 168 ---FVGGSSTGSAIAVAANFTVVSVGTETDGSILSPAVQNSVVGIKPTVGLISRRGII------PFTYSQDtaGPFARTV 238

                        250       260
                 ....*....|....*....|.
gi 17538254  286 ETNVDFLRTVwadTWITEQDP 306
Cdd:PRK06828 239 TDAAILLGSL---TGVDEKDV 256
PRK07139 PRK07139
amidase; Provisional
 158-256 1.05e-04

amidase; Provisional


Pssm-ID: 235945 [Multi-domain]  Cd Length: 439  Bit Score: 45.04  E-value: 1.05e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  158 TFRPTETDGVlVQQLKKLGAIPYVQTNVPQSLLSYNCSNPVYGTTNHPMDKTRTSGGSSGGESALISADGSLlGIGGDVG 237
Cdd:PRK07139  64 NFKPSYNATV-VQKLINAGAKPVAKVHCDELGLGGTGLFSAFGLIKNPLDSSKLVGGSSSGSAATFNKNISF-AIGSDTG 141

                         90
                 ....*....|....*....
gi 17538254  238 GSIRIPCAYTGTTGIKPSH 256
Cdd:PRK07139 142 DSVRLPASFIGKVGFKPSY 160
PRK08186 PRK08186
allophanate hydrolase; Provisional
 131-269 2.69e-04

allophanate hydrolase; Provisional


Pssm-ID: 236177 [Multi-domain]  Cd Length: 600  Bit Score: 43.68  E-value: 2.69e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  131 PLFGLPMSLKECVPLEGYDQTRGFVQDTFRPtETDGVLVQQLKKLGAIPYVQTNVPQ---------SllsyncsnPvYGT 201
Cdd:PRK08186  68 PLYGVPFAVKDNIDVAGLPTTAACPAFAYTP-ERDATVVARLRAAGAIVIGKTNLDQfatglvgtrS--------P-YGA 137

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17538254  202 TNHPMDKtrtsggssggesALI---SADGSL---------LGIGGDVGGSIRIPCAYTGTTGIKPSHLRFSHRGVcgsVP 269
Cdd:PRK08186 138 VRNAFDP------------EYVsggSSSGSAvavalglvsFALGTDTAGSGRVPAAFNNIVGLKPTLGLLSTRGV---VP 202
PRK08310 PRK08310
amidase; Provisional
 232-278 2.79e-04

amidase; Provisional


Pssm-ID: 181375 [Multi-domain]  Cd Length: 395  Bit Score: 43.43  E-value: 2.79e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 17538254  232 IGGDVGGSIRIPCAYTGTTGIKPSHLRFSHRGVCgsvpgrPLINSND 278
Cdd:PRK08310 128 LGTDTGGSVRAPASFCGLYGLRPTHGRISLEGVM------PLAPSFD 168
PBP2_AA_binding_like_2 cd13627
Substrate-binding domain of putative amino acid-binding protein; the type 2 ...
 46-115 4.21e-03

Substrate-binding domain of putative amino acid-binding protein; the type 2 periplasmic-binding protein fold; This putative amino acid-binding protein belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.


Pssm-ID: 270345 [Multi-domain]  Cd Length: 243  Bit Score: 39.31  E-value: 4.21e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 17538254  46 VKFAKESSEKLDKEtrLKIAAMEYSELKDGLQSGKITCIDAVRTyyakAISANEKT---------NSVCMFVKEAEKWA 115
Cdd:cd13627  40 VQIAKKLAEKLDMK--LVIKKIEWNGLIPALNSGDIDLIIAGMS----KTPEREKTidfsdpyyiSNIVMVVKKDSAYA 112
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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