NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|17541248|ref|NP_501765|]
View 

Major sperm protein [Caenorhabditis elegans]

Protein Classification

motile sperm domain-containing protein( domain architecture ID 10457611)

motile sperm domain-containing protein may form filaments, similar to major motile sperm protein (MSP) and vesicle-associated membrane protein-associated proteins

CATH:  2.60.40.10
SCOP:  4007566

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Motile_Sperm pfam00635
MSP (Major sperm protein) domain; Major sperm proteins are involved in sperm motility. These ...
 22-109 1.20e-21

MSP (Major sperm protein) domain; Major sperm proteins are involved in sperm motility. These proteins oligomerise to form filaments. This family contains many other proteins.


:

Pssm-ID: 459882  Cd Length: 109  Bit Score: 82.80  E-value: 1.20e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17541248    22 PNAGGKSEHMVVNFTSKRMAIKVRC-GNALFRVEPTHMIIEPNKCRQLTINRMP-----GPIQKDKAIVQYLEIEKDVQD 95
Cdd:pfam00635  16 GNKQGTSTLTLKNTSDKRVAFKVKTtNPKKYRVRPNYGIIKPGESVTITITRQPfdeepGDAKKDKFVIQYAVAPGDEKD 95

                          90
                  ....*....|....
gi 17541248    96 PKAAFKAADSAGTK 109
Cdd:pfam00635  96 AKEAFKRAWKTGAP 109
 
Name Accession Description Interval E-value
Motile_Sperm pfam00635
MSP (Major sperm protein) domain; Major sperm proteins are involved in sperm motility. These ...
 22-109 1.20e-21

MSP (Major sperm protein) domain; Major sperm proteins are involved in sperm motility. These proteins oligomerise to form filaments. This family contains many other proteins.


Pssm-ID: 459882  Cd Length: 109  Bit Score: 82.80  E-value: 1.20e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17541248    22 PNAGGKSEHMVVNFTSKRMAIKVRC-GNALFRVEPTHMIIEPNKCRQLTINRMP-----GPIQKDKAIVQYLEIEKDVQD 95
Cdd:pfam00635  16 GNKQGTSTLTLKNTSDKRVAFKVKTtNPKKYRVRPNYGIIKPGESVTITITRQPfdeepGDAKKDKFVIQYAVAPGDEKD 95

                          90
                  ....*....|....
gi 17541248    96 PKAAFKAADSAGTK 109
Cdd:pfam00635  96 AKEAFKRAWKTGAP 109
 
Name Accession Description Interval E-value
Motile_Sperm pfam00635
MSP (Major sperm protein) domain; Major sperm proteins are involved in sperm motility. These ...
 22-109 1.20e-21

MSP (Major sperm protein) domain; Major sperm proteins are involved in sperm motility. These proteins oligomerise to form filaments. This family contains many other proteins.


Pssm-ID: 459882  Cd Length: 109  Bit Score: 82.80  E-value: 1.20e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17541248    22 PNAGGKSEHMVVNFTSKRMAIKVRC-GNALFRVEPTHMIIEPNKCRQLTINRMP-----GPIQKDKAIVQYLEIEKDVQD 95
Cdd:pfam00635  16 GNKQGTSTLTLKNTSDKRVAFKVKTtNPKKYRVRPNYGIIKPGESVTITITRQPfdeepGDAKKDKFVIQYAVAPGDEKD 95

                          90
                  ....*....|....
gi 17541248    96 PKAAFKAADSAGTK 109
Cdd:pfam00635  96 AKEAFKRAWKTGAP 109
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH