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Conserved domains on  [gi|17541142|ref|NP_502544|]
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Protein lin-54 [Caenorhabditis elegans]

Protein Classification

TCR domain-containing protein( domain architecture ID 10508328)

TCR domain-containing protein similar to Homo sapiens tesmin, a testis-specific metallothionein-like protein, and to Arabidopsis thaliana TSO1, a novel protein that modulates cytokinesis and cell expansion in Arabidopsis

Gene Ontology:  GO:0003700|GO:0003677|GO:0046872

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TCR pfam03638
Tesmin/TSO1-like CXC domain, cysteine-rich domain; This family includes proteins that have two ...
 250-287 3.77e-17

Tesmin/TSO1-like CXC domain, cysteine-rich domain; This family includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C. The family includes Tesmin and TSO1. This family is called a CXC domain in.


:

Pssm-ID: 461001  Cd Length: 38  Bit Score: 74.56  E-value: 3.77e-17
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 17541142   250 QKGCHCKKSGCLKNYCECYEAKVPCTDRCKCKGCQNTE 287
Cdd:pfam03638   1 KKGCNCKKSKCLKLYCECFAAGVFCSSNCKCEGCKNTE 38
TCR pfam03638
Tesmin/TSO1-like CXC domain, cysteine-rich domain; This family includes proteins that have two ...
 174-209 4.56e-15

Tesmin/TSO1-like CXC domain, cysteine-rich domain; This family includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C. The family includes Tesmin and TSO1. This family is called a CXC domain in.


:

Pssm-ID: 461001  Cd Length: 38  Bit Score: 68.78  E-value: 4.56e-15
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 17541142   174 RKPCNCTKSQCLKLYCDCFANGEFCRD-CNCKDCHNN 209
Cdd:pfam03638   1 KKGCNCKKSKCLKLYCECFAAGVFCSSnCKCEGCKNT 37
 
Name Accession Description Interval E-value
TCR pfam03638
Tesmin/TSO1-like CXC domain, cysteine-rich domain; This family includes proteins that have two ...
 250-287 3.77e-17

Tesmin/TSO1-like CXC domain, cysteine-rich domain; This family includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C. The family includes Tesmin and TSO1. This family is called a CXC domain in.


Pssm-ID: 461001  Cd Length: 38  Bit Score: 74.56  E-value: 3.77e-17
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 17541142   250 QKGCHCKKSGCLKNYCECYEAKVPCTDRCKCKGCQNTE 287
Cdd:pfam03638   1 KKGCNCKKSKCLKLYCECFAAGVFCSSNCKCEGCKNTE 38
TCR pfam03638
Tesmin/TSO1-like CXC domain, cysteine-rich domain; This family includes proteins that have two ...
 174-209 4.56e-15

Tesmin/TSO1-like CXC domain, cysteine-rich domain; This family includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C. The family includes Tesmin and TSO1. This family is called a CXC domain in.


Pssm-ID: 461001  Cd Length: 38  Bit Score: 68.78  E-value: 4.56e-15
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 17541142   174 RKPCNCTKSQCLKLYCDCFANGEFCRD-CNCKDCHNN 209
Cdd:pfam03638   1 KKGCNCKKSKCLKLYCECFAAGVFCSSnCKCEGCKNT 37
MSL2_CXC cd13122
DNA-binding cysteine-rich domain of male-specific lethal 2 and related proteins; The CXC ...
 251-285 7.07e-03

DNA-binding cysteine-rich domain of male-specific lethal 2 and related proteins; The CXC domain of Drosophila melanogaster MSL2 forms a Zn(3)Cys(9) cluster and is involved in recruiting members of the dosage compensation complex (DCC) to sites on the X chromosome.


Pssm-ID: 240555  Cd Length: 50  Bit Score: 34.67  E-value: 7.07e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|..
gi 17541142 251 KGCHCKKSG-------CLKNYCECYEAKVPCTDrCKCKGCQN 285
Cdd:cd13122   5 KGCRCGTATqspgvltCRGQRCPCYSNGKSCLD-CKCRGCKN 45
 
Name Accession Description Interval E-value
TCR pfam03638
Tesmin/TSO1-like CXC domain, cysteine-rich domain; This family includes proteins that have two ...
 250-287 3.77e-17

Tesmin/TSO1-like CXC domain, cysteine-rich domain; This family includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C. The family includes Tesmin and TSO1. This family is called a CXC domain in.


Pssm-ID: 461001  Cd Length: 38  Bit Score: 74.56  E-value: 3.77e-17
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 17541142   250 QKGCHCKKSGCLKNYCECYEAKVPCTDRCKCKGCQNTE 287
Cdd:pfam03638   1 KKGCNCKKSKCLKLYCECFAAGVFCSSNCKCEGCKNTE 38
TCR pfam03638
Tesmin/TSO1-like CXC domain, cysteine-rich domain; This family includes proteins that have two ...
 174-209 4.56e-15

Tesmin/TSO1-like CXC domain, cysteine-rich domain; This family includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C. The family includes Tesmin and TSO1. This family is called a CXC domain in.


Pssm-ID: 461001  Cd Length: 38  Bit Score: 68.78  E-value: 4.56e-15
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 17541142   174 RKPCNCTKSQCLKLYCDCFANGEFCRD-CNCKDCHNN 209
Cdd:pfam03638   1 KKGCNCKKSKCLKLYCECFAAGVFCSSnCKCEGCKNT 37
MSL2_CXC cd13122
DNA-binding cysteine-rich domain of male-specific lethal 2 and related proteins; The CXC ...
 251-285 7.07e-03

DNA-binding cysteine-rich domain of male-specific lethal 2 and related proteins; The CXC domain of Drosophila melanogaster MSL2 forms a Zn(3)Cys(9) cluster and is involved in recruiting members of the dosage compensation complex (DCC) to sites on the X chromosome.


Pssm-ID: 240555  Cd Length: 50  Bit Score: 34.67  E-value: 7.07e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|..
gi 17541142 251 KGCHCKKSG-------CLKNYCECYEAKVPCTDrCKCKGCQN 285
Cdd:cd13122   5 KGCRCGTATqspgvltCRGQRCPCYSNGKSCLD-CKCRGCKN 45
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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