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Conserved domains on  [gi|17542586|ref|NP_502764|]
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Protein containing ALS2cr12 (ALS2CR12) signature [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PTZ00121 super family cl31754
MAEBL; Provisional
36-240 1.48e-05

MAEBL; Provisional


The actual alignment was detected with superfamily member PTZ00121:

Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 47.44  E-value: 1.48e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542586    36 QMRKdhANELKKKSDEAYNNDMEELKKT--------RSAFDQEIAKRHAAADMQMSELVKSNNTELKTLQDQFNRDEASH 107
Cdd:PTZ00121 1624 ELKK--AEEEKKKVEQLKKKEAEEKKKAeelkkaeeENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEA 1701
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542586   108 GMAMKMMVREHAEKMK--------ELRSEGREAQERAEREHRMKMSEAEEEHRKEKEIAQEKMDAAKREGSM---KIALV 176
Cdd:PTZ00121 1702 KKAEELKKKEAEEKKKaeelkkaeEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIrkeKEAVI 1781
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 17542586   177 EEEKQKIMKERSDELEKYTREMNEMAKNHQEERKKHNAIIGQKKmEMIGSKRDQLKIESEKILE 240
Cdd:PTZ00121 1782 EEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSK-EMEDSAIKEVADSKNMQLE 1844
 
Name Accession Description Interval E-value
PTZ00121 PTZ00121
MAEBL; Provisional
36-240 1.48e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 47.44  E-value: 1.48e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542586    36 QMRKdhANELKKKSDEAYNNDMEELKKT--------RSAFDQEIAKRHAAADMQMSELVKSNNTELKTLQDQFNRDEASH 107
Cdd:PTZ00121 1624 ELKK--AEEEKKKVEQLKKKEAEEKKKAeelkkaeeENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEA 1701
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542586   108 GMAMKMMVREHAEKMK--------ELRSEGREAQERAEREHRMKMSEAEEEHRKEKEIAQEKMDAAKREGSM---KIALV 176
Cdd:PTZ00121 1702 KKAEELKKKEAEEKKKaeelkkaeEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIrkeKEAVI 1781
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 17542586   177 EEEKQKIMKERSDELEKYTREMNEMAKNHQEERKKHNAIIGQKKmEMIGSKRDQLKIESEKILE 240
Cdd:PTZ00121 1782 EEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSK-EMEDSAIKEVADSKNMQLE 1844
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
51-250 1.38e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 44.28  E-value: 1.38e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542586     51 EAYNNDMEELKKTRSAFDQEIAKRHAAADmQMSELVKSNNTELKTLQDQFNRDEASHGMAMKMMVREHAEKmKELRSEGR 130
Cdd:TIGR02168  743 EQLEERIAQLSKELTELEAEIEELEERLE-EAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAEL-TLLNEEAA 820
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542586    131 EAQERAEREHRMKMSEAEEEHRKEKEIAQEKMDAAKREGSM------------KIALVEEEKQKI---MKERSDELEKYT 195
Cdd:TIGR02168  821 NLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIeeleelieelesELEALLNERASLeeaLALLRSELEELS 900
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 17542586    196 REMNEMAKNHQEERKKHNAIigQKKMEMIGSKRDQLKIESEKILESMRNDINLLL 250
Cdd:TIGR02168  901 EELRELESKRSELRRELEEL--REKLAQLELRLEGLEVRIDNLQERLSEEYSLTL 953
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
36-240 4.77e-03

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 39.34  E-value: 4.77e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542586    36 QMRKDHANELKKKsdeaynNDMEELKKTRsafdQEIAKRHAAADMQMSELVKSNNTELKTLQDQFNRDEA----SHGMAM 111
Cdd:pfam17380 303 QEKEEKAREVERR------RKLEEAEKAR----QAEMDRQAAIYAEQERMAMERERELERIRQEERKRELerirQEEIAM 372
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542586   112 KMmvrehaEKMKELRSEGREAQERAER-----EHRMKMSEAEEEHRKEKEIAQEKMDAAKREG----SMKIALVEEEKQK 182
Cdd:pfam17380 373 EI------SRMRELERLQMERQQKNERvrqelEAARKVKILEEERQRKIQQQKVEMEQIRAEQeearQREVRRLEEERAR 446
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542586   183 IMkERSDELEKYTREMNEMAKNHQEERKKhnaiigqKKMEMIGSKRDQLKIESE--KILE 240
Cdd:pfam17380 447 EM-ERVRLEEQERQQQVERLRQQEEERKR-------KKLELEKEKRDRKRAEEQrrKILE 498
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
51-256 6.78e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 38.76  E-value: 6.78e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542586  51 EAYNNDMEELKKTRSAFDQEIAKRHAAADmQMSELVKSNNTELKTLQDQFNRDEASHGMAMKMMVREHAEKMKELRSEGR 130
Cdd:COG1196 242 EELEAELEELEAELEELEAELAELEAELE-ELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEE 320
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542586 131 EAQERAEREHRMKMSEAEEEHRKEKEIAQEKMDAAKREGSMKIALVEEEKQKIMKERSDELEKYTREMNEMAKNHQEERK 210
Cdd:COG1196 321 LEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAA 400
                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*.
gi 17542586 211 KHNAIigQKKMEMIGSKRDQLKIESEKILESMRNDINLLLAVEIKQ 256
Cdd:COG1196 401 QLEEL--EEAEEALLERLERLEEELEELEEALAELEEEEEEEEEAL 444
 
Name Accession Description Interval E-value
PTZ00121 PTZ00121
MAEBL; Provisional
36-240 1.48e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 47.44  E-value: 1.48e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542586    36 QMRKdhANELKKKSDEAYNNDMEELKKT--------RSAFDQEIAKRHAAADMQMSELVKSNNTELKTLQDQFNRDEASH 107
Cdd:PTZ00121 1624 ELKK--AEEEKKKVEQLKKKEAEEKKKAeelkkaeeENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEA 1701
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542586   108 GMAMKMMVREHAEKMK--------ELRSEGREAQERAEREHRMKMSEAEEEHRKEKEIAQEKMDAAKREGSM---KIALV 176
Cdd:PTZ00121 1702 KKAEELKKKEAEEKKKaeelkkaeEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIrkeKEAVI 1781
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 17542586   177 EEEKQKIMKERSDELEKYTREMNEMAKNHQEERKKHNAIIGQKKmEMIGSKRDQLKIESEKILE 240
Cdd:PTZ00121 1782 EEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSK-EMEDSAIKEVADSKNMQLE 1844
PTZ00121 PTZ00121
MAEBL; Provisional
44-256 2.37e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 47.06  E-value: 2.37e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542586    44 ELKKKSDEAYNNDM---EELKKTRSAFDQEIAKRHAA-ADMQMSELVKSNNTELKTLQDQFNRDEASHGMAMKMMVREHA 119
Cdd:PTZ00121 1567 EEAKKAEEDKNMALrkaEEAKKAEEARIEEVMKLYEEeKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEK 1646
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542586   120 EKMKELRSEGREAQERAEREHRMKMSEA--------EEEHRKEKEIAQEKMDAAKREGSMKIALVEEEKQKIMKERSDEL 191
Cdd:PTZ00121 1647 KKAEELKKAEEENKIKAAEEAKKAEEDKkkaeeakkAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEE 1726
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 17542586   192 EKYTReMNEMAKNHQEERKKHNAIigqKKMEMIGSKRDQLKIESEKILESMRNDINLLLAVEIKQ 256
Cdd:PTZ00121 1727 ENKIK-AEEAKKEAEEDKKKAEEA---KKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDE 1787
PTZ00121 PTZ00121
MAEBL; Provisional
39-237 3.47e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 46.29  E-value: 3.47e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542586    39 KDHANELKKKSDEAYNNDmEELKKTRSAFDQEIAKRHAAADMQMSELvKSNNTELKTLQDQFNRDEASHGMAMKMMVREH 118
Cdd:PTZ00121 1443 AKKADEAKKKAEEAKKAE-EAKKKAEEAKKADEAKKKAEEAKKADEA-KKKAEEAKKKADEAKKAAEAKKKADEAKKAEE 1520
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542586   119 AEKMKELR--SEGREAQERAEREHRMKMSEAEEEHRKEKEIAQEKMDAAKREGSMKIALVE--EEKQKIMKERSDELEKY 194
Cdd:PTZ00121 1521 AKKADEAKkaEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRkaEEAKKAEEARIEEVMKL 1600
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 17542586   195 TREMNEM----AKNHQEERKKHNAIigqKKMEMIGSKRDQLKIESEK 237
Cdd:PTZ00121 1601 YEEEKKMkaeeAKKAEEAKIKAEEL---KKAEEEKKKVEQLKKKEAE 1644
PTZ00121 PTZ00121
MAEBL; Provisional
42-238 4.57e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 45.90  E-value: 4.57e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542586    42 ANELKKKSDEAYNNDMEELKKTRSAFDQEIAKRHAAADMQMSELVKSNNTELKTLQDQFNRDEASHGMAMKMMvrEHAEK 121
Cdd:PTZ00121 1232 AEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKA--DEAKK 1309
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542586   122 MKELRSEGREAQERAErEHRMKMSEAE---EEHRKEKEIAQEKMDAAKRE--GSMKIALVEEEKQKIMKERSDELEKYTR 196
Cdd:PTZ00121 1310 KAEEAKKADEAKKKAE-EAKKKADAAKkkaEEAKKAAEAAKAEAEAAADEaeAAEEKAEAAEKKKEEAKKKADAAKKKAE 1388
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 17542586   197 EM---NEMAKNHQEERKKHNAIigqKKMEMIGSKRDQLKIESEKI 238
Cdd:PTZ00121 1389 EKkkaDEAKKKAEEDKKKADEL---KKAAAAKKKADEAKKKAEEK 1430
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
51-250 1.38e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 44.28  E-value: 1.38e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542586     51 EAYNNDMEELKKTRSAFDQEIAKRHAAADmQMSELVKSNNTELKTLQDQFNRDEASHGMAMKMMVREHAEKmKELRSEGR 130
Cdd:TIGR02168  743 EQLEERIAQLSKELTELEAEIEELEERLE-EAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAEL-TLLNEEAA 820
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542586    131 EAQERAEREHRMKMSEAEEEHRKEKEIAQEKMDAAKREGSM------------KIALVEEEKQKI---MKERSDELEKYT 195
Cdd:TIGR02168  821 NLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIeeleelieelesELEALLNERASLeeaLALLRSELEELS 900
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 17542586    196 REMNEMAKNHQEERKKHNAIigQKKMEMIGSKRDQLKIESEKILESMRNDINLLL 250
Cdd:TIGR02168  901 EELRELESKRSELRRELEEL--REKLAQLELRLEGLEVRIDNLQERLSEEYSLTL 953
PTZ00121 PTZ00121
MAEBL; Provisional
7-276 2.52e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 43.59  E-value: 2.52e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542586     7 AEGAKMASGAAKETSSNLFGIWDTWNSNPQMRKDHANELKKKSDEAYNNDMEELKKTRSAFDQEIAKRHAAADMQMSELV 86
Cdd:PTZ00121 1324 AEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED 1403
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542586    87 KSNNTELKTLQDQFNRDEASHGMAMKMMVREHAEKMKELRSEGREAQERAEREHRMKMSEAEEEHRKEKEIAQEKMDAAK 166
Cdd:PTZ00121 1404 KKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAK 1483
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542586   167 REGSMKiALVEEEKQKI--------MKERSDELEKYTREMN-EMAKNHQEERKKHNAIIGQ--------KKMEMIGSKRD 229
Cdd:PTZ00121 1484 KADEAK-KKAEEAKKKAdeakkaaeAKKKADEAKKAEEAKKaDEAKKAEEAKKADEAKKAEekkkadelKKAEELKKAEE 1562
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 17542586   230 QLKIESEKILESMRNdINLLLAVEIKQNGSHLVEKLIDLFESVKTVK 276
Cdd:PTZ00121 1563 KKKAEEAKKAEEDKN-MALRKAEEAKKAEEARIEEVMKLYEEEKKMK 1608
PTZ00121 PTZ00121
MAEBL; Provisional
39-237 5.05e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 42.44  E-value: 5.05e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542586    39 KDHANELKKKSDEAynNDMEELKKTRsafdQEIAKRHAAADMQMSELVKSNNTELKTLQDQFNRDEASH--GMAMKMMVR 116
Cdd:PTZ00121 1301 KKKADEAKKKAEEA--KKADEAKKKA----EEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEekAEAAEKKKE 1374
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542586   117 EHAEKMKELRSEGREAQERAEREHRMKMSEAEEEHRKEKEIAQEKMDAAKREGSMKIALVEEEKQKIMKERSDELEKYT- 195
Cdd:PTZ00121 1375 EAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAe 1454
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 17542586   196 --REMNEMAKNHQEERKKHNAiigqKKMEMIGSKRDQLKIESEK 237
Cdd:PTZ00121 1455 eaKKAEEAKKKAEEAKKADEA----KKKAEEAKKADEAKKKAEE 1494
PTZ00121 PTZ00121
MAEBL; Provisional
42-237 4.56e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 39.35  E-value: 4.56e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542586    42 ANELKKKSDEAYNND----MEELKKTRSAFDQEIAKRhaAADMQMSELVKSNNtELKTLQDQFNRDEASHGMAMKMMVRE 117
Cdd:PTZ00121 1505 AAEAKKKADEAKKAEeakkADEAKKAEEAKKADEAKK--AEEKKKADELKKAE-ELKKAEEKKKAEEAKKAEEDKNMALR 1581
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542586   118 HAEKMK--------------ELRSEGREAQERAEREHRMKMSEAEEEHRKEKEIAQEKMDAAKREGSMKIALVEEEKQKI 183
Cdd:PTZ00121 1582 KAEEAKkaeearieevmklyEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKI 1661
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 17542586   184 MKERSDELEKYTREMNEMAKNHQEERKKHNAIIGQKKMEMIGSKRDQLKIESEK 237
Cdd:PTZ00121 1662 KAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEK 1715
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
36-240 4.77e-03

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 39.34  E-value: 4.77e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542586    36 QMRKDHANELKKKsdeaynNDMEELKKTRsafdQEIAKRHAAADMQMSELVKSNNTELKTLQDQFNRDEA----SHGMAM 111
Cdd:pfam17380 303 QEKEEKAREVERR------RKLEEAEKAR----QAEMDRQAAIYAEQERMAMERERELERIRQEERKRELerirQEEIAM 372
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542586   112 KMmvrehaEKMKELRSEGREAQERAER-----EHRMKMSEAEEEHRKEKEIAQEKMDAAKREG----SMKIALVEEEKQK 182
Cdd:pfam17380 373 EI------SRMRELERLQMERQQKNERvrqelEAARKVKILEEERQRKIQQQKVEMEQIRAEQeearQREVRRLEEERAR 446
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542586   183 IMkERSDELEKYTREMNEMAKNHQEERKKhnaiigqKKMEMIGSKRDQLKIESE--KILE 240
Cdd:pfam17380 447 EM-ERVRLEEQERQQQVERLRQQEEERKR-------KKLELEKEKRDRKRAEEQrrKILE 498
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
51-256 6.78e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 38.76  E-value: 6.78e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542586  51 EAYNNDMEELKKTRSAFDQEIAKRHAAADmQMSELVKSNNTELKTLQDQFNRDEASHGMAMKMMVREHAEKMKELRSEGR 130
Cdd:COG1196 242 EELEAELEELEAELEELEAELAELEAELE-ELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEE 320
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542586 131 EAQERAEREHRMKMSEAEEEHRKEKEIAQEKMDAAKREGSMKIALVEEEKQKIMKERSDELEKYTREMNEMAKNHQEERK 210
Cdd:COG1196 321 LEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAA 400
                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*.
gi 17542586 211 KHNAIigQKKMEMIGSKRDQLKIESEKILESMRNDINLLLAVEIKQ 256
Cdd:COG1196 401 QLEEL--EEAEEALLERLERLEEELEELEEALAELEEEEEEEEEAL 444
PRK00409 PRK00409
recombination and DNA strand exchange inhibitor protein; Reviewed
128-248 7.78e-03

recombination and DNA strand exchange inhibitor protein; Reviewed


Pssm-ID: 234750 [Multi-domain]  Cd Length: 782  Bit Score: 38.65  E-value: 7.78e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542586  128 EGREAQERAEREHRMKMSEAEEEHRKEKEIAQEKMDAAKREGSMKIALVEEEKQKIMKERSDELEKYTREMNEMAKNHQE 207
Cdd:PRK00409 523 ASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYA 602
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 17542586  208 ERKKHNAIIGQKKMEmigskrDQLKIESEKILESMRNDINL 248
Cdd:PRK00409 603 SVKAHELIEARKRLN------KANEKKEKKKKKQKEKQEEL 637
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
44-221 9.44e-03

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 38.18  E-value: 9.44e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542586    44 ELKKKSDEAYNNDMEELKKTRSAFDQEIAKRHAAADMQMSELVKSNNTELKTLQDQFNRDEASHGMAMKMMVREHAEKmK 123
Cdd:pfam17380 409 EERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDR-K 487
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542586   124 ELRSEGREAQERAEREHRMKMSEaEEEHRK--EKEIaQEKMDAAKREGSMKIALVEEEKQKIMKERsdelekytREMNEM 201
Cdd:pfam17380 488 RAEEQRRKILEKELEERKQAMIE-EERKRKllEKEM-EERQKAIYEEERRREAEEERRKQQEMEER--------RRIQEQ 557
                         170       180
                  ....*....|....*....|
gi 17542586   202 AKNHQEERKKHNAIIGQKKM 221
Cdd:pfam17380 558 MRKATEERSRLEAMEREREM 577
HEC1 COG5185
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ...
117-237 9.49e-03

Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 444066 [Multi-domain]  Cd Length: 594  Bit Score: 38.40  E-value: 9.49e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17542586 117 EHAEKMKELRSEGREAQERAEREHRMKMSEAEEEHRKEKEIAQEKMDAAKREGSMKIALVEEEKQKIMKERSDELEKYTR 196
Cdd:COG5185 253 DKLEKLVEQNTDLRLEKLGENAESSKRLNENANNLIKQFENTKEKIAEYTKSIDIKKATESLEEQLAAAEAEQELEESKR 332
                        90       100       110       120
                ....*....|....*....|....*....|....*....|.
gi 17542586 197 EMNEMAKNHQEERKKHNAIIgQKKMEMIGSKRDQLKIESEK 237
Cdd:COG5185 333 ETETGIQNLTAEIEQGQESL-TENLEAIKEEIENIVGEVEL 372
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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