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Conserved domains on  [gi|392918490|ref|NP_503625|]
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DUF38 domain-containing protein [Caenorhabditis elegans]

Protein Classification

FTH domain-containing protein( domain architecture ID 707519)

FTH (FOG-2 homology) domain-containing protein may be involved in protein-protein interactions

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FTH super family cl28746
FTH domain; This presumed domain is likely to be a protein-protein interaction module. It is ...
 163-263 8.56e-09

FTH domain; This presumed domain is likely to be a protein-protein interaction module. It is found in many proteins from C. elegans. The domain is found associated with the F-box pfam00646. This domain is named FTH after FOG-2 homology domain.


The actual alignment was detected with superfamily member pfam01827:

Pssm-ID: 396410  Cd Length: 141  Bit Score: 53.73  E-value: 8.56e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392918490  163 LLELLSYFDTSVLRIIKIKSYYMLRDaVDRLIATKQFRNAKEVHICPMM--RIPIEPFLHLDSFEISMTSVKSDDVVTLM 240
Cdd:pfam01827  32 VASILPYFDAGTLEEIELSSESDEDQ-FEEIVELEQWKNAKSLKIEGSSlsSFPIEHLFHFEEFDIKLDSFSVEDAIKIR 110

                          90       100
                  ....*....|....*....|...
gi 392918490  241 KKFQQKLTPNNCHFRLTNEEKLE 263
Cdd:pfam01827 111 DILLKSSTFQSCTIRSPDLNPIE 133
 
Name Accession Description Interval E-value
FTH pfam01827
FTH domain; This presumed domain is likely to be a protein-protein interaction module. It is ...
 163-263 8.56e-09

FTH domain; This presumed domain is likely to be a protein-protein interaction module. It is found in many proteins from C. elegans. The domain is found associated with the F-box pfam00646. This domain is named FTH after FOG-2 homology domain.


Pssm-ID: 396410  Cd Length: 141  Bit Score: 53.73  E-value: 8.56e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392918490  163 LLELLSYFDTSVLRIIKIKSYYMLRDaVDRLIATKQFRNAKEVHICPMM--RIPIEPFLHLDSFEISMTSVKSDDVVTLM 240
Cdd:pfam01827  32 VASILPYFDAGTLEEIELSSESDEDQ-FEEIVELEQWKNAKSLKIEGSSlsSFPIEHLFHFEEFDIKLDSFSVEDAIKIR 110

                          90       100
                  ....*....|....*....|...
gi 392918490  241 KKFQQKLTPNNCHFRLTNEEKLE 263
Cdd:pfam01827 111 DILLKSSTFQSCTIRSPDLNPIE 133
 
Name Accession Description Interval E-value
FTH pfam01827
FTH domain; This presumed domain is likely to be a protein-protein interaction module. It is ...
 163-263 8.56e-09

FTH domain; This presumed domain is likely to be a protein-protein interaction module. It is found in many proteins from C. elegans. The domain is found associated with the F-box pfam00646. This domain is named FTH after FOG-2 homology domain.


Pssm-ID: 396410  Cd Length: 141  Bit Score: 53.73  E-value: 8.56e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392918490  163 LLELLSYFDTSVLRIIKIKSYYMLRDaVDRLIATKQFRNAKEVHICPMM--RIPIEPFLHLDSFEISMTSVKSDDVVTLM 240
Cdd:pfam01827  32 VASILPYFDAGTLEEIELSSESDEDQ-FEEIVELEQWKNAKSLKIEGSSlsSFPIEHLFHFEEFDIKLDSFSVEDAIKIR 110

                          90       100
                  ....*....|....*....|...
gi 392918490  241 KKFQQKLTPNNCHFRLTNEEKLE 263
Cdd:pfam01827 111 DILLKSSTFQSCTIRSPDLNPIE 133
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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