NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|17557978|ref|NP_504488|]
View 

CUB-like domain-containing protein [Caenorhabditis elegans]

Protein Classification

CUB domain-containing protein( domain architecture ID 1781)

CUB (complement C1r/C1s, Uegf, Bmp1) domain-containing protein

PubMed:  8510165

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
CUB super family cl00049
CUB domain; extracellular domain; present in proteins mostly known to be involved in ...
 45-141 2.84e-07

CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.


The actual alignment was detected with superfamily member pfam02408:

Pssm-ID: 412131  Cd Length: 120  Bit Score: 49.30  E-value: 2.84e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557978    45 YIPENSTTPFEIRANFTCKYQFFVPKGTYLRLSVINSLLDKDYIEFADSVGYVRNLTVSNiaNEELFATSGYGYVKIGAG 124
Cdd:pfam02408  27 NTWNGSMEPPKIPANQNCSWNINVPKGYYAKVIISAKTNDDSSITVTDSLGNSEYVTDSD--NEPYFFVSPSFTINLSTG 104

                          90
                  ....*....|....*..
gi 17557978   125 pQGRSQALLVFQWLKMP 141
Cdd:pfam02408 105 -SGSVSFGFKVQWSPYP 120
 
Name Accession Description Interval E-value
CUB_2 pfam02408
CUB-like domain; This is a family of hypothetical C. elegans proteins. The aligned region has ...
 45-141 2.84e-07

CUB-like domain; This is a family of hypothetical C. elegans proteins. The aligned region has no known function nor do any of the proteins which possess it. However, this domain is related to the CUB domain.


Pssm-ID: 280554  Cd Length: 120  Bit Score: 49.30  E-value: 2.84e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557978    45 YIPENSTTPFEIRANFTCKYQFFVPKGTYLRLSVINSLLDKDYIEFADSVGYVRNLTVSNiaNEELFATSGYGYVKIGAG 124
Cdd:pfam02408  27 NTWNGSMEPPKIPANQNCSWNINVPKGYYAKVIISAKTNDDSSITVTDSLGNSEYVTDSD--NEPYFFVSPSFTINLSTG 104

                          90
                  ....*....|....*..
gi 17557978   125 pQGRSQALLVFQWLKMP 141
Cdd:pfam02408 105 -SGSVSFGFKVQWSPYP 120
 
Name Accession Description Interval E-value
CUB_2 pfam02408
CUB-like domain; This is a family of hypothetical C. elegans proteins. The aligned region has ...
 45-141 2.84e-07

CUB-like domain; This is a family of hypothetical C. elegans proteins. The aligned region has no known function nor do any of the proteins which possess it. However, this domain is related to the CUB domain.


Pssm-ID: 280554  Cd Length: 120  Bit Score: 49.30  E-value: 2.84e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557978    45 YIPENSTTPFEIRANFTCKYQFFVPKGTYLRLSVINSLLDKDYIEFADSVGYVRNLTVSNiaNEELFATSGYGYVKIGAG 124
Cdd:pfam02408  27 NTWNGSMEPPKIPANQNCSWNINVPKGYYAKVIISAKTNDDSSITVTDSLGNSEYVTDSD--NEPYFFVSPSFTINLSTG 104

                          90
                  ....*....|....*..
gi 17557978   125 pQGRSQALLVFQWLKMP 141
Cdd:pfam02408 105 -SGSVSFGFKVQWSPYP 120
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH