NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|808358568|ref|NP_504877|]
View 

ShKT domain-containing protein [Caenorhabditis elegans]

Protein Classification

ShKT domain-containing protein( domain architecture ID 10480162)

ShKT (ShK toxin) domain-containing protein similar to Toxocara canis surface coat glycoprotein TES-120 precursor

CATH:  1.10.10.740
SCOP:  3000917
TCDB:  8.B.14

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ShK pfam01549
ShK domain-like; This domain of is found in several C. elegans proteins. The domain is 30 ...
 159-194 2.32e-04

ShK domain-like; This domain of is found in several C. elegans proteins. The domain is 30 amino acids long and rich in cysteine residues. There are 6 conserved cysteine positions in the domain that form three disulphide bridges. The domain is found in the potassium channel inhibitor ShK in sea anemone.


:

Pssm-ID: 426319  Cd Length: 37  Bit Score: 37.76  E-value: 2.32e-04
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 808358568  159 GCVDAVVDCANDRSI-CQSVGMQEFVNQNCQRTCGRC 194
Cdd:pfam01549   1 SCVDPHSDCASWAALgCTSPFYQDFMKENCPKTCGFC 37
ShK pfam01549
ShK domain-like; This domain of is found in several C. elegans proteins. The domain is 30 ...
 121-155 3.35e-04

ShK domain-like; This domain of is found in several C. elegans proteins. The domain is 30 amino acids long and rich in cysteine residues. There are 6 conserved cysteine positions in the domain that form three disulphide bridges. The domain is found in the potassium channel inhibitor ShK in sea anemone.


:

Pssm-ID: 426319  Cd Length: 37  Bit Score: 37.37  E-value: 3.35e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 808358568  121 QFPRLNCDTITNNQCKDPNWRTIIATDCPSACGFC 155
Cdd:pfam01549   3 VDPHSDCASWAALGCTSPFYQDFMKENCPKTCGFC 37
 
Name Accession Description Interval E-value
ShK pfam01549
ShK domain-like; This domain of is found in several C. elegans proteins. The domain is 30 ...
 159-194 2.32e-04

ShK domain-like; This domain of is found in several C. elegans proteins. The domain is 30 amino acids long and rich in cysteine residues. There are 6 conserved cysteine positions in the domain that form three disulphide bridges. The domain is found in the potassium channel inhibitor ShK in sea anemone.


Pssm-ID: 426319  Cd Length: 37  Bit Score: 37.76  E-value: 2.32e-04
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 808358568  159 GCVDAVVDCANDRSI-CQSVGMQEFVNQNCQRTCGRC 194
Cdd:pfam01549   1 SCVDPHSDCASWAALgCTSPFYQDFMKENCPKTCGFC 37
ShK pfam01549
ShK domain-like; This domain of is found in several C. elegans proteins. The domain is 30 ...
 121-155 3.35e-04

ShK domain-like; This domain of is found in several C. elegans proteins. The domain is 30 amino acids long and rich in cysteine residues. There are 6 conserved cysteine positions in the domain that form three disulphide bridges. The domain is found in the potassium channel inhibitor ShK in sea anemone.


Pssm-ID: 426319  Cd Length: 37  Bit Score: 37.37  E-value: 3.35e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 808358568  121 QFPRLNCDTITNNQCKDPNWRTIIATDCPSACGFC 155
Cdd:pfam01549   3 VDPHSDCASWAALGCTSPFYQDFMKENCPKTCGFC 37
 
Name Accession Description Interval E-value
ShK pfam01549
ShK domain-like; This domain of is found in several C. elegans proteins. The domain is 30 ...
 159-194 2.32e-04

ShK domain-like; This domain of is found in several C. elegans proteins. The domain is 30 amino acids long and rich in cysteine residues. There are 6 conserved cysteine positions in the domain that form three disulphide bridges. The domain is found in the potassium channel inhibitor ShK in sea anemone.


Pssm-ID: 426319  Cd Length: 37  Bit Score: 37.76  E-value: 2.32e-04
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 808358568  159 GCVDAVVDCANDRSI-CQSVGMQEFVNQNCQRTCGRC 194
Cdd:pfam01549   1 SCVDPHSDCASWAALgCTSPFYQDFMKENCPKTCGFC 37
ShK pfam01549
ShK domain-like; This domain of is found in several C. elegans proteins. The domain is 30 ...
 121-155 3.35e-04

ShK domain-like; This domain of is found in several C. elegans proteins. The domain is 30 amino acids long and rich in cysteine residues. There are 6 conserved cysteine positions in the domain that form three disulphide bridges. The domain is found in the potassium channel inhibitor ShK in sea anemone.


Pssm-ID: 426319  Cd Length: 37  Bit Score: 37.37  E-value: 3.35e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 808358568  121 QFPRLNCDTITNNQCKDPNWRTIIATDCPSACGFC 155
Cdd:pfam01549   3 VDPHSDCASWAALGCTSPFYQDFMKENCPKTCGFC 37
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH