NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|392919480|ref|NP_504881|]
View 

UPF0376 protein C03G6.5 [Caenorhabditis elegans]

Protein Classification

DUF19 domain-containing protein( domain architecture ID 10481514)

DUF19 domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF19 pfam01579
Domain of unknown function (DUF19); This presumed domain has no known function. It is found in ...
 33-198 4.13e-49

Domain of unknown function (DUF19); This presumed domain has no known function. It is found in one or two copies in several Caenorhabditis elegans proteins. It is roughly 130 amino acids long. The domain contains 12 conserved cysteines which suggests that the domain is an extracellular domain and that these cysteines form six intradomain disulphide bridges. The GO annotation for this protein indicates that it has a function in nematode larval development and has a positive regulation of growth rate.


:

Pssm-ID: 426332  Cd Length: 154  Bit Score: 156.86  E-value: 4.13e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392919480   33 CTVQDGYAALMCLVRLSDFAEKVDNLDMNDKTKLKEFKRSCDSLHSCYSNLNCTTksDDEKDKYVESIKQYCDAVVYVSD 112
Cdd:pfam01579   1 CTEEDLLKAGKCLPRLGDFLEKTDELDIKDKDELKKFNKSCESFLSCFKTLKCLE--DDEAVKAKNKIEKYCDAVKFLST 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392919480  113 GFSKCSDKLNE--KKSKCFDDWDPIPNKihleedeakieKIKNEACKTYFGKDDCMKKEITETCGKEEWDSFRKQFVNLS 190
Cdd:pfam01579  79 DFAECMEKLYKakKNSECFKDWDPFPKD-----------EKLKEKCKNYFGKDNCMKKEITETCGKEEWEYFKKHYLKLN 147


                  ....*...
gi 392919480  191 GGLvSKCD 198
Cdd:pfam01579 148 DIL-KKCD 154
 
Name Accession Description Interval E-value
DUF19 pfam01579
Domain of unknown function (DUF19); This presumed domain has no known function. It is found in ...
 33-198 4.13e-49

Domain of unknown function (DUF19); This presumed domain has no known function. It is found in one or two copies in several Caenorhabditis elegans proteins. It is roughly 130 amino acids long. The domain contains 12 conserved cysteines which suggests that the domain is an extracellular domain and that these cysteines form six intradomain disulphide bridges. The GO annotation for this protein indicates that it has a function in nematode larval development and has a positive regulation of growth rate.


Pssm-ID: 426332  Cd Length: 154  Bit Score: 156.86  E-value: 4.13e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392919480   33 CTVQDGYAALMCLVRLSDFAEKVDNLDMNDKTKLKEFKRSCDSLHSCYSNLNCTTksDDEKDKYVESIKQYCDAVVYVSD 112
Cdd:pfam01579   1 CTEEDLLKAGKCLPRLGDFLEKTDELDIKDKDELKKFNKSCESFLSCFKTLKCLE--DDEAVKAKNKIEKYCDAVKFLST 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392919480  113 GFSKCSDKLNE--KKSKCFDDWDPIPNKihleedeakieKIKNEACKTYFGKDDCMKKEITETCGKEEWDSFRKQFVNLS 190
Cdd:pfam01579  79 DFAECMEKLYKakKNSECFKDWDPFPKD-----------EKLKEKCKNYFGKDNCMKKEITETCGKEEWEYFKKHYLKLN 147


                  ....*...
gi 392919480  191 GGLvSKCD 198
Cdd:pfam01579 148 DIL-KKCD 154
 
Name Accession Description Interval E-value
DUF19 pfam01579
Domain of unknown function (DUF19); This presumed domain has no known function. It is found in ...
 33-198 4.13e-49

Domain of unknown function (DUF19); This presumed domain has no known function. It is found in one or two copies in several Caenorhabditis elegans proteins. It is roughly 130 amino acids long. The domain contains 12 conserved cysteines which suggests that the domain is an extracellular domain and that these cysteines form six intradomain disulphide bridges. The GO annotation for this protein indicates that it has a function in nematode larval development and has a positive regulation of growth rate.


Pssm-ID: 426332  Cd Length: 154  Bit Score: 156.86  E-value: 4.13e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392919480   33 CTVQDGYAALMCLVRLSDFAEKVDNLDMNDKTKLKEFKRSCDSLHSCYSNLNCTTksDDEKDKYVESIKQYCDAVVYVSD 112
Cdd:pfam01579   1 CTEEDLLKAGKCLPRLGDFLEKTDELDIKDKDELKKFNKSCESFLSCFKTLKCLE--DDEAVKAKNKIEKYCDAVKFLST 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392919480  113 GFSKCSDKLNE--KKSKCFDDWDPIPNKihleedeakieKIKNEACKTYFGKDDCMKKEITETCGKEEWDSFRKQFVNLS 190
Cdd:pfam01579  79 DFAECMEKLYKakKNSECFKDWDPFPKD-----------EKLKEKCKNYFGKDNCMKKEITETCGKEEWEYFKKHYLKLN 147


                  ....*...
gi 392919480  191 GGLvSKCD 198
Cdd:pfam01579 148 DIL-KKCD 154
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH