NOT2/NOT3/NOT5 C-terminal domain-containing protein [Caenorhabditis elegans]
NOT2/NOT3/NOT5 family protein( domain architecture ID 602)
NOT2/NOT3/NOT5 family protein similar to Homo sapiens CCR4-NOT transcription complex subunit 2 (CNOT2), which is a component of the CCR4-NOT complex that is one of the major cellular mRNA deadenylases and is linked to various cellular processes including bulk mRNA degradation, miRNA-mediated repression, translational repression during translational initiation and general transcription regulation
List of domain hits
Name | Accession | Description | Interval | E-value | |||
NOT2_3_5 super family | cl02384 | NOT2 / NOT3 / NOT5 family; NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that ... |
203-291 | 7.66e-13 | |||
NOT2 / NOT3 / NOT5 family; NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that negatively regulates the basal and activated transcription of many genes. This family includes NOT2, NOT3 and NOT5. The actual alignment was detected with superfamily member pfam04153: Pssm-ID: 470561 Cd Length: 121 Bit Score: 65.31 E-value: 7.66e-13
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Name | Accession | Description | Interval | E-value | |||
NOT2_3_5 | pfam04153 | NOT2 / NOT3 / NOT5 family; NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that ... |
203-291 | 7.66e-13 | |||
NOT2 / NOT3 / NOT5 family; NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that negatively regulates the basal and activated transcription of many genes. This family includes NOT2, NOT3 and NOT5. Pssm-ID: 461199 Cd Length: 121 Bit Score: 65.31 E-value: 7.66e-13
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CDC36 | COG5601 | General negative regulator of transcription subunit [Transcription]; |
168-294 | 5.38e-07 | |||
General negative regulator of transcription subunit [Transcription]; Pssm-ID: 227888 Cd Length: 172 Bit Score: 49.59 E-value: 5.38e-07
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Name | Accession | Description | Interval | E-value | |||
NOT2_3_5 | pfam04153 | NOT2 / NOT3 / NOT5 family; NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that ... |
203-291 | 7.66e-13 | |||
NOT2 / NOT3 / NOT5 family; NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that negatively regulates the basal and activated transcription of many genes. This family includes NOT2, NOT3 and NOT5. Pssm-ID: 461199 Cd Length: 121 Bit Score: 65.31 E-value: 7.66e-13
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CDC36 | COG5601 | General negative regulator of transcription subunit [Transcription]; |
168-294 | 5.38e-07 | |||
General negative regulator of transcription subunit [Transcription]; Pssm-ID: 227888 Cd Length: 172 Bit Score: 49.59 E-value: 5.38e-07
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Blast search parameters | ||||
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