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Conserved domains on  [gi|17558910|ref|NP_506118|]
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G-protein coupled receptors family 1 profile domain-containing protein [Caenorhabditis elegans]

Protein Classification

G protein-coupled receptor family protein( domain architecture ID 705710)

G protein-coupled receptor family protein is a seven-transmembrane G protein-coupled receptor (7TM-GPCR) family protein which typically transmits an extracellular signal into the cell by the conformational rearrangement of the 7TM helices and by the subsequent binding and activation of an intracellular heterotrimeric G protein; GPCR ligands include light-sensitive compounds, odors, pheromones, hormones, and neurotransmitters

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
7tm_GPCRs super family cl28897
seven-transmembrane G protein-coupled receptor superfamily; This hierarchical evolutionary ...
33-368 2.87e-17

seven-transmembrane G protein-coupled receptor superfamily; This hierarchical evolutionary model represents the seven-transmembrane (7TM) receptors, often referred to as G protein-coupled receptors (GPCRs), which transmit physiological signals from the outside of the cell to the inside via G proteins. GPCRs constitute the largest known superfamily of transmembrane receptors across the three kingdoms of life that respond to a wide variety of extracellular stimuli including peptides, lipids, neurotransmitters, amino acids, hormones, and sensory stimuli such as light, smell and taste. All GPCRs share a common structural architecture comprising of seven-transmembrane (TM) alpha-helices interconnected by three extracellular and three intracellular loops. A general feature of GPCR signaling is agonist-induced conformational changes in the receptors, leading to activation of the heterotrimeric G proteins, which consist of the guanine nucleotide-binding G-alpha subunit and the dimeric G-beta-gamma subunits. The activated G proteins then bind to and activate numerous downstream effector proteins, which generate second messengers that mediate a broad range of cellular and physiological processes. However, some 7TM receptors, such as the type 1 microbial rhodopsins, do not activate G proteins. Based on sequence similarity, GPCRs can be divided into six major classes: class A (the rhodopsin-like family), class B (the Methuselah-like, adhesion and secretin-like receptor family), class C (the metabotropic glutamate receptor family), class D (the fungal mating pheromone receptors), class E (the cAMP receptor family), and class F (the frizzled/smoothened receptor family). Nearly 800 human GPCR genes have been identified and are involved essentially in all major physiological processes. Approximately 40% of clinically marketed drugs mediate their effects through modulation of GPCR function for the treatment of a variety of human diseases including bacterial infections.


The actual alignment was detected with superfamily member cd14978:

Pssm-ID: 475119 [Multi-domain]  Cd Length: 299  Bit Score: 81.53  E-value: 2.87e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17558910  33 FVLIMVATVIASLGTIGNILLLIVFSAKQIsNTPATLYPSVLACLDFAICFEYILLFGVDALVSYlkIESLFSLYYVYIV 112
Cdd:cd14978   1 VLYGYVLPVICIFGIIGNILNLVVLTRKSM-RSSTNVYLAALAVSDILVLLSALPLFLLPYIADY--SSSFLSYFYAYFL 77
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17558910 113 P-AYVMARITQLAIPYMLIFATLERlfWTSKNKSNLLKAFHSTTGRHITVIVSLIMCILLRSPSAFAIRVDEYPKCPDFF 191
Cdd:cd14978  78 PyIYPLANTFQTASVWLTVALTVER--YIAVCHPLKARTWCTPRRARRVILIIIIFSLLLNLPRFFEYEVVECENCNNNS 155
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17558910 192 RTKTTNPREWALESQLYHFFDFqVMTIAQTLVPFVLLVGLNLIIVRRMCSdsvqkeklpeptevcfkedrlltqitpVHK 271
Cdd:cd14978 156 YYYVIPTLLRQNETYLLKYYFW-LYAIFVVLLPFILLLILNILLIRALRK---------------------------SKK 207
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17558910 272 SSTTIGLSFPPLKSMSPAVRSAVFTMAAIVTSYLISNILHLSLTVLERSGHQILKSEedpqmsstFHTFFSDLVSFVYMF 351
Cdd:cd14978 208 RRRLLRRRRRLLSRSQRRERRTTIMLIAVVIVFLICNLPAGILNILEAIFGESFLSP--------IYQLLGDISNLLVVL 279
                       330
                ....*....|....*..
gi 17558910 352 TSAIRIVIYYLCNPKIR 368
Cdd:cd14978 280 NSAVNFIIYCLFSSKFR 296
 
Name Accession Description Interval E-value
7tmA_FMRFamide_R-like cd14978
FMRFamide (Phe-Met-Arg-Phe) receptors and related proteins, member of the class A family of ...
33-368 2.87e-17

FMRFamide (Phe-Met-Arg-Phe) receptors and related proteins, member of the class A family of seven-transmembrane G protein-coupled receptors; This group includes Drosophila melanogaster G-protein coupled FMRFamide (Phe-Met-Arg-Phe-NH2) receptor DrmFMRFa-R and related invertebrate receptors, as well as the vertebrate proteins GPR139 and GPR142. DrmFMRFa-R binds with high affinity to FMRFamide and intrinsic FMRFamide-related peptides. FMRFamide is a neuropeptide from the family of FMRFamide-related peptides (FaRPs), which all containing a C-terminal RFamide (Arg-Phe-NH2) motif and have diverse functions in the central and peripheral nervous systems. FMRFamide is an important neuropeptide in many types of invertebrates such as insects, nematodes, molluscs, and worms. In invertebrates, the FMRFamide-related peptides are involved in the regulation of heart rate, blood pressure, gut motility, feeding behavior, and reproduction. On the other hand, in vertebrates such as mice, they play a role in the modulation of morphine-induced antinociception. Orphan receptors GPR139 and GPR142 are very closely related G protein-coupled receptors, but they have different expression patterns in the brain and in other tissues. These receptors couple to inhibitory G proteins and activate phospholipase C. Studies suggested that dimer formation may be required for their proper function. GPR142 is predominantly expressed in pancreatic beta-cells and mediates enhancement of glucose-stimulated insulin secretion, whereas GPR139 is mostly expressed in the brain and is suggested to play a role in the control of locomotor activity. Tryptophan and phenylalanine have been identified as putative endogenous ligands of GPR139.


Pssm-ID: 410630 [Multi-domain]  Cd Length: 299  Bit Score: 81.53  E-value: 2.87e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17558910  33 FVLIMVATVIASLGTIGNILLLIVFSAKQIsNTPATLYPSVLACLDFAICFEYILLFGVDALVSYlkIESLFSLYYVYIV 112
Cdd:cd14978   1 VLYGYVLPVICIFGIIGNILNLVVLTRKSM-RSSTNVYLAALAVSDILVLLSALPLFLLPYIADY--SSSFLSYFYAYFL 77
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17558910 113 P-AYVMARITQLAIPYMLIFATLERlfWTSKNKSNLLKAFHSTTGRHITVIVSLIMCILLRSPSAFAIRVDEYPKCPDFF 191
Cdd:cd14978  78 PyIYPLANTFQTASVWLTVALTVER--YIAVCHPLKARTWCTPRRARRVILIIIIFSLLLNLPRFFEYEVVECENCNNNS 155
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17558910 192 RTKTTNPREWALESQLYHFFDFqVMTIAQTLVPFVLLVGLNLIIVRRMCSdsvqkeklpeptevcfkedrlltqitpVHK 271
Cdd:cd14978 156 YYYVIPTLLRQNETYLLKYYFW-LYAIFVVLLPFILLLILNILLIRALRK---------------------------SKK 207
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17558910 272 SSTTIGLSFPPLKSMSPAVRSAVFTMAAIVTSYLISNILHLSLTVLERSGHQILKSEedpqmsstFHTFFSDLVSFVYMF 351
Cdd:cd14978 208 RRRLLRRRRRLLSRSQRRERRTTIMLIAVVIVFLICNLPAGILNILEAIFGESFLSP--------IYQLLGDISNLLVVL 279
                       330
                ....*....|....*..
gi 17558910 352 TSAIRIVIYYLCNPKIR 368
Cdd:cd14978 280 NSAVNFIIYCLFSSKFR 296
 
Name Accession Description Interval E-value
7tmA_FMRFamide_R-like cd14978
FMRFamide (Phe-Met-Arg-Phe) receptors and related proteins, member of the class A family of ...
33-368 2.87e-17

FMRFamide (Phe-Met-Arg-Phe) receptors and related proteins, member of the class A family of seven-transmembrane G protein-coupled receptors; This group includes Drosophila melanogaster G-protein coupled FMRFamide (Phe-Met-Arg-Phe-NH2) receptor DrmFMRFa-R and related invertebrate receptors, as well as the vertebrate proteins GPR139 and GPR142. DrmFMRFa-R binds with high affinity to FMRFamide and intrinsic FMRFamide-related peptides. FMRFamide is a neuropeptide from the family of FMRFamide-related peptides (FaRPs), which all containing a C-terminal RFamide (Arg-Phe-NH2) motif and have diverse functions in the central and peripheral nervous systems. FMRFamide is an important neuropeptide in many types of invertebrates such as insects, nematodes, molluscs, and worms. In invertebrates, the FMRFamide-related peptides are involved in the regulation of heart rate, blood pressure, gut motility, feeding behavior, and reproduction. On the other hand, in vertebrates such as mice, they play a role in the modulation of morphine-induced antinociception. Orphan receptors GPR139 and GPR142 are very closely related G protein-coupled receptors, but they have different expression patterns in the brain and in other tissues. These receptors couple to inhibitory G proteins and activate phospholipase C. Studies suggested that dimer formation may be required for their proper function. GPR142 is predominantly expressed in pancreatic beta-cells and mediates enhancement of glucose-stimulated insulin secretion, whereas GPR139 is mostly expressed in the brain and is suggested to play a role in the control of locomotor activity. Tryptophan and phenylalanine have been identified as putative endogenous ligands of GPR139.


Pssm-ID: 410630 [Multi-domain]  Cd Length: 299  Bit Score: 81.53  E-value: 2.87e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17558910  33 FVLIMVATVIASLGTIGNILLLIVFSAKQIsNTPATLYPSVLACLDFAICFEYILLFGVDALVSYlkIESLFSLYYVYIV 112
Cdd:cd14978   1 VLYGYVLPVICIFGIIGNILNLVVLTRKSM-RSSTNVYLAALAVSDILVLLSALPLFLLPYIADY--SSSFLSYFYAYFL 77
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17558910 113 P-AYVMARITQLAIPYMLIFATLERlfWTSKNKSNLLKAFHSTTGRHITVIVSLIMCILLRSPSAFAIRVDEYPKCPDFF 191
Cdd:cd14978  78 PyIYPLANTFQTASVWLTVALTVER--YIAVCHPLKARTWCTPRRARRVILIIIIFSLLLNLPRFFEYEVVECENCNNNS 155
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17558910 192 RTKTTNPREWALESQLYHFFDFqVMTIAQTLVPFVLLVGLNLIIVRRMCSdsvqkeklpeptevcfkedrlltqitpVHK 271
Cdd:cd14978 156 YYYVIPTLLRQNETYLLKYYFW-LYAIFVVLLPFILLLILNILLIRALRK---------------------------SKK 207
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17558910 272 SSTTIGLSFPPLKSMSPAVRSAVFTMAAIVTSYLISNILHLSLTVLERSGHQILKSEedpqmsstFHTFFSDLVSFVYMF 351
Cdd:cd14978 208 RRRLLRRRRRLLSRSQRRERRTTIMLIAVVIVFLICNLPAGILNILEAIFGESFLSP--------IYQLLGDISNLLVVL 279
                       330
                ....*....|....*..
gi 17558910 352 TSAIRIVIYYLCNPKIR 368
Cdd:cd14978 280 NSAVNFIIYCLFSSKFR 296
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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