NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|17561088|ref|NP_506554|]
View 

Serpentine Receptor, class M [Caenorhabditis elegans]

Protein Classification

serpentine receptor domain-containing protein( domain architecture ID 27798)

serpentine receptor domain-containing protein which belongs to a family of seven-transmembrane (7TM) G protein-coupled receptors involved in chemoreception, a central sense of soil nematodes like Caenorhabditis elegans

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
7TM_GPCR_Srh super family cl11665
Serpentine type 7TM GPCR chemoreceptor Srh; Chemoreception is mediated in Caenorhabditis ...
 221-332 9.88e-03

Serpentine type 7TM GPCR chemoreceptor Srh; Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type. Srh is part of the Str superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf'.


The actual alignment was detected with superfamily member pfam10318:

Pssm-ID: 416353  Cd Length: 302  Bit Score: 37.52  E-value: 9.88e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17561088   221 IMSAVAYVLTLILSILVMILCTIkINLKVRESKNSSNNLLVLQKKMNRVLLAQFFCPLIFIQAPFYYSVLGPIVGLSQGL 300
Cdd:pfam10318 187 LICIVLLILILIIQILFFVFLTI-YYLFKSVKSSLSKKTRKLQKKFFIALIIQVSIPLIVILIPLIYILFSIIFGYYNQA 265

                          90       100       110
                  ....*....|....*....|....*....|..
gi 17561088   301 VTDLLPLLFAWSPVVNTLFIFILNSEIRNALI 332
Cdd:pfam10318 266 LNNLLFIIISLHGLLSTIAMLLVHKPYRKFVL 297
 
Name Accession Description Interval E-value
7TM_GPCR_Srh pfam10318
Serpentine type 7TM GPCR chemoreceptor Srh; Chemoreception is mediated in Caenorhabditis ...
 221-332 9.88e-03

Serpentine type 7TM GPCR chemoreceptor Srh; Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type. Srh is part of the Str superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf'.


Pssm-ID: 402095  Cd Length: 302  Bit Score: 37.52  E-value: 9.88e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17561088   221 IMSAVAYVLTLILSILVMILCTIkINLKVRESKNSSNNLLVLQKKMNRVLLAQFFCPLIFIQAPFYYSVLGPIVGLSQGL 300
Cdd:pfam10318 187 LICIVLLILILIIQILFFVFLTI-YYLFKSVKSSLSKKTRKLQKKFFIALIIQVSIPLIVILIPLIYILFSIIFGYYNQA 265

                          90       100       110
                  ....*....|....*....|....*....|..
gi 17561088   301 VTDLLPLLFAWSPVVNTLFIFILNSEIRNALI 332
Cdd:pfam10318 266 LNNLLFIIISLHGLLSTIAMLLVHKPYRKFVL 297
 
Name Accession Description Interval E-value
7TM_GPCR_Srh pfam10318
Serpentine type 7TM GPCR chemoreceptor Srh; Chemoreception is mediated in Caenorhabditis ...
 221-332 9.88e-03

Serpentine type 7TM GPCR chemoreceptor Srh; Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type. Srh is part of the Str superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf'.


Pssm-ID: 402095  Cd Length: 302  Bit Score: 37.52  E-value: 9.88e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17561088   221 IMSAVAYVLTLILSILVMILCTIkINLKVRESKNSSNNLLVLQKKMNRVLLAQFFCPLIFIQAPFYYSVLGPIVGLSQGL 300
Cdd:pfam10318 187 LICIVLLILILIIQILFFVFLTI-YYLFKSVKSSLSKKTRKLQKKFFIALIIQVSIPLIVILIPLIYILFSIIFGYYNQA 265

                          90       100       110
                  ....*....|....*....|....*....|..
gi 17561088   301 VTDLLPLLFAWSPVVNTLFIFILNSEIRNALI 332
Cdd:pfam10318 266 LNNLLFIIISLHGLLSTIAMLLVHKPYRKFVL 297
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH