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Conserved domains on  [gi|17557462|ref|NP_506714|]
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Methylthioribose-1-phosphate isomerase [Caenorhabditis elegans]

Protein Classification

translation initiation factor eIF-2B alpha/beta/delta subunit family protein( domain architecture ID 595)

translation initiation factor eIF-2B alpha/beta/delta subunit family protein similar to methylthioribose-1-phosphate isomerase that catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P)

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK08535 super family cl00348
ribose 1,5-bisphosphate isomerase;
27-353 1.41e-139

ribose 1,5-bisphosphate isomerase;


The actual alignment was detected with superfamily member TIGR00512:

Pssm-ID: 444854 [Multi-domain]  Cd Length: 335  Bit Score: 399.70  E-value: 1.41e-139
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462    27 SLKFDGTNLEVLDQLLLPHEFKYIPVEGVSDAFAVIKSMQVRGAPLIAVVGSLGLLLEIQKASELDSES----IIQKINF 102
Cdd:TIGR00512   2 AIKWSRGSLEILDQRLLPHESEYIEVTTVEDVADAIRDMRVRGAPAIGIVAAYGLALAAREGETDEGEEfkafLEEKLQY 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462   103 LISSRPTAVDLRNSLNGLKPILESQDYSDVVKlEKCRSYLLNVYTDEKLQNRILVWNAYQELLSAFPDKEKLTVMTICNT 182
Cdd:TIGR00512  82 LVSSRPTAVNLSWALDRMRAALREAKTVADIK-EALLAEAERILEEDLEDNRAIGENGAALIKKGVAAKEPVRVLTHCNT 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462   183 GSLATISWGTALGVIRALHSENRLKLVYVLETRPYNQGIRLTSIELLHGEVPFKLITDSMAAWAMKNHQVDCVLTGADNV 262
Cdd:TIGR00512 161 GSLATAGYGTALGVIRSAHEKGRLEHVYADETRPYNQGARLTAWELVQEGIPATLITDSMAAHLMKHGEVDAVIVGADRI 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462   263 ARNGDTANKIGTYMLAVLCKHHNINFYPVVPFTTINKNIATGEEIKIEERPSAEMLRVNGVLIGNSECPVWNPAFDVTPA 342
Cdd:TIGR00512 241 AANGDTANKIGTYQLAILAKHHGVPFYVAAPTSTIDLELADGAEIPIEERPPEEVTHVGGVRIAPPGIGVWNPAFDVTPA 320
                         330
                  ....*....|.
gi 17557462   343 HLITKILTDFG 353
Cdd:TIGR00512 321 ELITGIITEKG 331
 
Name Accession Description Interval E-value
salvage_mtnA TIGR00512
S-methyl-5-thioribose-1-phosphate isomerase; The delineation of this family was based in part ...
27-353 1.41e-139

S-methyl-5-thioribose-1-phosphate isomerase; The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA. [Amino acid biosynthesis, Aspartate family]


Pssm-ID: 273112 [Multi-domain]  Cd Length: 335  Bit Score: 399.70  E-value: 1.41e-139
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462    27 SLKFDGTNLEVLDQLLLPHEFKYIPVEGVSDAFAVIKSMQVRGAPLIAVVGSLGLLLEIQKASELDSES----IIQKINF 102
Cdd:TIGR00512   2 AIKWSRGSLEILDQRLLPHESEYIEVTTVEDVADAIRDMRVRGAPAIGIVAAYGLALAAREGETDEGEEfkafLEEKLQY 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462   103 LISSRPTAVDLRNSLNGLKPILESQDYSDVVKlEKCRSYLLNVYTDEKLQNRILVWNAYQELLSAFPDKEKLTVMTICNT 182
Cdd:TIGR00512  82 LVSSRPTAVNLSWALDRMRAALREAKTVADIK-EALLAEAERILEEDLEDNRAIGENGAALIKKGVAAKEPVRVLTHCNT 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462   183 GSLATISWGTALGVIRALHSENRLKLVYVLETRPYNQGIRLTSIELLHGEVPFKLITDSMAAWAMKNHQVDCVLTGADNV 262
Cdd:TIGR00512 161 GSLATAGYGTALGVIRSAHEKGRLEHVYADETRPYNQGARLTAWELVQEGIPATLITDSMAAHLMKHGEVDAVIVGADRI 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462   263 ARNGDTANKIGTYMLAVLCKHHNINFYPVVPFTTINKNIATGEEIKIEERPSAEMLRVNGVLIGNSECPVWNPAFDVTPA 342
Cdd:TIGR00512 241 AANGDTANKIGTYQLAILAKHHGVPFYVAAPTSTIDLELADGAEIPIEERPPEEVTHVGGVRIAPPGIGVWNPAFDVTPA 320
                         330
                  ....*....|.
gi 17557462   343 HLITKILTDFG 353
Cdd:TIGR00512 321 ELITGIITEKG 331
MtnA COG0182
5-methylthioribose/5-deoxyribulose 1-phosphate isomerase (methionine salvage pathway), a ...
23-353 3.87e-130

5-methylthioribose/5-deoxyribulose 1-phosphate isomerase (methionine salvage pathway), a paralog of eIF-2B alpha subunit [Amino acid transport and metabolism];


Pssm-ID: 439952  Cd Length: 343  Bit Score: 376.30  E-value: 3.87e-130
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462  23 KRLDSLKFDGTNLEVLDQLLLPHEFKYIPVEGVSDAFAVIKSMQVRGAPLIAVVGSLGLLLEIQKASELDSESIIQKI-- 100
Cdd:COG0182   1 DKVRTIWWDGGALVLLDQTLLPHEEEYVELTTVEDVAEAIRDMVVRGAPAIGVAAAYGVALAAREAAADDREEFLAELee 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462 101 --NFLISSRPTAVDLRNSLNGLKPILEsqdysDVVKLEKCRSYLLN----VYTDEKLQNR-ILVWNAyqELLsafpdKEK 173
Cdd:COG0182  81 aaEYLAATRPTAVNLFWALDRMLAALE-----ELPSVEEIREALLAealaIADEDVAANRaIGEHGA--ELI-----PDG 148
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462 174 LTVMTICNTGSLATISWGTALGVIRALHSENRLKLVYVLETRPYNQGIRLTSIELLHGEVPFKLITDSMAAWAMKNHQVD 253
Cdd:COG0182 149 DTILTHCNAGALATVGYGTALGVIRAAHEAGKLIHVYADETRPLLQGARLTAWELMQDGIPVTLITDNAAGHLMQRGKVD 228
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462 254 CVLTGADNVARNGDTANKIGTYMLAVLCKHHNINFYPVVPFTTINKNIATGEEIKIEERPSAEMLRVNGVLIGNSECPVW 333
Cdd:COG0182 229 AVIVGADRIAANGDVANKIGTYGLAVLAKHHGIPFYVAAPTSTIDLSLPDGEDIPIEERDPDEVTHVGGRRIAPEGVPVY 308
                       330       340
                ....*....|....*....|
gi 17557462 334 NPAFDVTPAHLITKILTDFG 353
Cdd:COG0182 309 NPAFDVTPAELITAIITEKG 328
IF-2B pfam01008
Initiation factor 2 subunit family; This family includes initiation factor 2B alpha, beta and ...
66-357 3.70e-112

Initiation factor 2 subunit family; This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes, initiation factor 2B subunits 1 and 2 from archaebacteria and some proteins of unknown function from prokaryotes. Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. Members of this family have also been characterized as 5-methylthioribose- 1-phosphate isomerases, an enzyme of the methionine salvage pathway. The crystal structure of Ypr118w, a non-essential, low-copy number gene product from Saccharomyces cerevisiae, reveals a dimeric protein with two domains and a putative active site cleft.


Pssm-ID: 395798 [Multi-domain]  Cd Length: 281  Bit Score: 328.10  E-value: 3.70e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462    66 QVRGAPLIAVVGSLGLLLEIQKASELDS----ESIIQKINFLISSRPTAVDLRNSLNGLKPI-LESQDYSDVVKLEKCRS 140
Cdd:pfam01008   1 KVRGSPAIAIAALEGLLLVIQDARTPTVaelkEQLRSAIEFLISARPTAVSLGNAIDRLLRIvLALHSSSDVEEAKESLI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462   141 YLLNVYTDEKLQNRILVWNAYQELLsafpdKEKLTVMTICNTGslatiswgTALGVIRALHSENRLKLVYVLETRPYNQG 220
Cdd:pfam01008  81 EAADEFIDEIEEARRKIGAIAAELI-----KDGDTILTHCNSG--------TVLGVLRAAHKEGKRFRVIVTESRPRLQG 147
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462   221 iRLTSIELLHGEVPFKLITDSMAAWAMKnhQVDCVLTGADNVARNGDTANKIGTYMLAVLCKHHNINFYPVVPFTTINKN 300
Cdd:pfam01008 148 -RLTAKELVQAGIPVTLITDSAVGYVMQ--EVDKVIVGADRILANGGIANKIGTYQLALLAKAHNVPFYVVAETYKFDPR 224
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 17557462   301 IATGEEIKIEERPSAEMLRVNGVLIGNSECPVWNPAFDVTPAHLITKILTDFGNWPP 357
Cdd:pfam01008 225 FPLDEDIFIEERDPEEVLYRTGVRIAPPNLKVRNPAFDYTPPELITLIITEVGVLPP 281
mtnA PRK05720
methylthioribose-1-phosphate isomerase; Reviewed
24-353 4.48e-109

methylthioribose-1-phosphate isomerase; Reviewed


Pssm-ID: 235578  Cd Length: 344  Bit Score: 322.54  E-value: 4.48e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462   24 RLDSLKFDGTNLEVLDQLLLPHEFKYIP---VEGVSDAfavIKSMQVRGAPLIAVVGSLGLLL---EIQKASELDSESII 97
Cdd:PRK05720   2 QPRPVAWKDGAVRILDQRKLPHEVEYVElttAEEVADA---IRDMVVRGAPAIGIAAAYGMALaarEDASDDGEEFLKKL 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462   98 QKI-NFLISSRPTAVDLRNSLNGLKPILESQDYSDVVK-LEKcrsyllnvYTDEKLQNRILVWNAY-QELLSAFPDKEkl 174
Cdd:PRK05720  79 EEAaAYLAASRPTAVNLFWALDRMREVLAPLPGAERKAaLEE--------EAIEIHEEDVEINRAIgEHGLTLIRKGQ-- 148
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462  175 TVMTICNTGSLATISWGTALGVIRALHSENRLKLVYVLETRPYNQGIRLTSIELLHGEVPFKLITDSMAAWAMKNHQVDC 254
Cdd:PRK05720 149 GILTHCNAGWLATAGYGTALAPIYAAKEKGIDIHVYADETRPRLQGARLTAWELYQAGIDVTVITDNMAAHLMQTGKIDA 228
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462  255 VLTGADNVARNGDTANKIGTYMLAVLCKHHNINFYPVVPFTTINKNIATGEEIKIEERPSAEMLRVNGVLIGNSECPVWN 334
Cdd:PRK05720 229 VIVGADRIAANGDVANKIGTYQLAIAAKYHGVPFYVAAPSSTIDLTLADGKEIPIEERDPEEVTEVGGVRIAPEGVKVYN 308
                        330
                 ....*....|....*....
gi 17557462  335 PAFDVTPAHLITKILTDFG 353
Cdd:PRK05720 309 PAFDVTPAELITGIITEKG 327
 
Name Accession Description Interval E-value
salvage_mtnA TIGR00512
S-methyl-5-thioribose-1-phosphate isomerase; The delineation of this family was based in part ...
27-353 1.41e-139

S-methyl-5-thioribose-1-phosphate isomerase; The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA. [Amino acid biosynthesis, Aspartate family]


Pssm-ID: 273112 [Multi-domain]  Cd Length: 335  Bit Score: 399.70  E-value: 1.41e-139
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462    27 SLKFDGTNLEVLDQLLLPHEFKYIPVEGVSDAFAVIKSMQVRGAPLIAVVGSLGLLLEIQKASELDSES----IIQKINF 102
Cdd:TIGR00512   2 AIKWSRGSLEILDQRLLPHESEYIEVTTVEDVADAIRDMRVRGAPAIGIVAAYGLALAAREGETDEGEEfkafLEEKLQY 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462   103 LISSRPTAVDLRNSLNGLKPILESQDYSDVVKlEKCRSYLLNVYTDEKLQNRILVWNAYQELLSAFPDKEKLTVMTICNT 182
Cdd:TIGR00512  82 LVSSRPTAVNLSWALDRMRAALREAKTVADIK-EALLAEAERILEEDLEDNRAIGENGAALIKKGVAAKEPVRVLTHCNT 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462   183 GSLATISWGTALGVIRALHSENRLKLVYVLETRPYNQGIRLTSIELLHGEVPFKLITDSMAAWAMKNHQVDCVLTGADNV 262
Cdd:TIGR00512 161 GSLATAGYGTALGVIRSAHEKGRLEHVYADETRPYNQGARLTAWELVQEGIPATLITDSMAAHLMKHGEVDAVIVGADRI 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462   263 ARNGDTANKIGTYMLAVLCKHHNINFYPVVPFTTINKNIATGEEIKIEERPSAEMLRVNGVLIGNSECPVWNPAFDVTPA 342
Cdd:TIGR00512 241 AANGDTANKIGTYQLAILAKHHGVPFYVAAPTSTIDLELADGAEIPIEERPPEEVTHVGGVRIAPPGIGVWNPAFDVTPA 320
                         330
                  ....*....|.
gi 17557462   343 HLITKILTDFG 353
Cdd:TIGR00512 321 ELITGIITEKG 331
MtnA COG0182
5-methylthioribose/5-deoxyribulose 1-phosphate isomerase (methionine salvage pathway), a ...
23-353 3.87e-130

5-methylthioribose/5-deoxyribulose 1-phosphate isomerase (methionine salvage pathway), a paralog of eIF-2B alpha subunit [Amino acid transport and metabolism];


Pssm-ID: 439952  Cd Length: 343  Bit Score: 376.30  E-value: 3.87e-130
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462  23 KRLDSLKFDGTNLEVLDQLLLPHEFKYIPVEGVSDAFAVIKSMQVRGAPLIAVVGSLGLLLEIQKASELDSESIIQKI-- 100
Cdd:COG0182   1 DKVRTIWWDGGALVLLDQTLLPHEEEYVELTTVEDVAEAIRDMVVRGAPAIGVAAAYGVALAAREAAADDREEFLAELee 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462 101 --NFLISSRPTAVDLRNSLNGLKPILEsqdysDVVKLEKCRSYLLN----VYTDEKLQNR-ILVWNAyqELLsafpdKEK 173
Cdd:COG0182  81 aaEYLAATRPTAVNLFWALDRMLAALE-----ELPSVEEIREALLAealaIADEDVAANRaIGEHGA--ELI-----PDG 148
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462 174 LTVMTICNTGSLATISWGTALGVIRALHSENRLKLVYVLETRPYNQGIRLTSIELLHGEVPFKLITDSMAAWAMKNHQVD 253
Cdd:COG0182 149 DTILTHCNAGALATVGYGTALGVIRAAHEAGKLIHVYADETRPLLQGARLTAWELMQDGIPVTLITDNAAGHLMQRGKVD 228
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462 254 CVLTGADNVARNGDTANKIGTYMLAVLCKHHNINFYPVVPFTTINKNIATGEEIKIEERPSAEMLRVNGVLIGNSECPVW 333
Cdd:COG0182 229 AVIVGADRIAANGDVANKIGTYGLAVLAKHHGIPFYVAAPTSTIDLSLPDGEDIPIEERDPDEVTHVGGRRIAPEGVPVY 308
                       330       340
                ....*....|....*....|
gi 17557462 334 NPAFDVTPAHLITKILTDFG 353
Cdd:COG0182 309 NPAFDVTPAELITAIITEKG 328
IF-2B pfam01008
Initiation factor 2 subunit family; This family includes initiation factor 2B alpha, beta and ...
66-357 3.70e-112

Initiation factor 2 subunit family; This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes, initiation factor 2B subunits 1 and 2 from archaebacteria and some proteins of unknown function from prokaryotes. Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. Members of this family have also been characterized as 5-methylthioribose- 1-phosphate isomerases, an enzyme of the methionine salvage pathway. The crystal structure of Ypr118w, a non-essential, low-copy number gene product from Saccharomyces cerevisiae, reveals a dimeric protein with two domains and a putative active site cleft.


Pssm-ID: 395798 [Multi-domain]  Cd Length: 281  Bit Score: 328.10  E-value: 3.70e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462    66 QVRGAPLIAVVGSLGLLLEIQKASELDS----ESIIQKINFLISSRPTAVDLRNSLNGLKPI-LESQDYSDVVKLEKCRS 140
Cdd:pfam01008   1 KVRGSPAIAIAALEGLLLVIQDARTPTVaelkEQLRSAIEFLISARPTAVSLGNAIDRLLRIvLALHSSSDVEEAKESLI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462   141 YLLNVYTDEKLQNRILVWNAYQELLsafpdKEKLTVMTICNTGslatiswgTALGVIRALHSENRLKLVYVLETRPYNQG 220
Cdd:pfam01008  81 EAADEFIDEIEEARRKIGAIAAELI-----KDGDTILTHCNSG--------TVLGVLRAAHKEGKRFRVIVTESRPRLQG 147
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462   221 iRLTSIELLHGEVPFKLITDSMAAWAMKnhQVDCVLTGADNVARNGDTANKIGTYMLAVLCKHHNINFYPVVPFTTINKN 300
Cdd:pfam01008 148 -RLTAKELVQAGIPVTLITDSAVGYVMQ--EVDKVIVGADRILANGGIANKIGTYQLALLAKAHNVPFYVVAETYKFDPR 224
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 17557462   301 IATGEEIKIEERPSAEMLRVNGVLIGNSECPVWNPAFDVTPAHLITKILTDFGNWPP 357
Cdd:pfam01008 225 FPLDEDIFIEERDPEEVLYRTGVRIAPPNLKVRNPAFDYTPPELITLIITEVGVLPP 281
mtnA PRK05720
methylthioribose-1-phosphate isomerase; Reviewed
24-353 4.48e-109

methylthioribose-1-phosphate isomerase; Reviewed


Pssm-ID: 235578  Cd Length: 344  Bit Score: 322.54  E-value: 4.48e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462   24 RLDSLKFDGTNLEVLDQLLLPHEFKYIP---VEGVSDAfavIKSMQVRGAPLIAVVGSLGLLL---EIQKASELDSESII 97
Cdd:PRK05720   2 QPRPVAWKDGAVRILDQRKLPHEVEYVElttAEEVADA---IRDMVVRGAPAIGIAAAYGMALaarEDASDDGEEFLKKL 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462   98 QKI-NFLISSRPTAVDLRNSLNGLKPILESQDYSDVVK-LEKcrsyllnvYTDEKLQNRILVWNAY-QELLSAFPDKEkl 174
Cdd:PRK05720  79 EEAaAYLAASRPTAVNLFWALDRMREVLAPLPGAERKAaLEE--------EAIEIHEEDVEINRAIgEHGLTLIRKGQ-- 148
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462  175 TVMTICNTGSLATISWGTALGVIRALHSENRLKLVYVLETRPYNQGIRLTSIELLHGEVPFKLITDSMAAWAMKNHQVDC 254
Cdd:PRK05720 149 GILTHCNAGWLATAGYGTALAPIYAAKEKGIDIHVYADETRPRLQGARLTAWELYQAGIDVTVITDNMAAHLMQTGKIDA 228
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462  255 VLTGADNVARNGDTANKIGTYMLAVLCKHHNINFYPVVPFTTINKNIATGEEIKIEERPSAEMLRVNGVLIGNSECPVWN 334
Cdd:PRK05720 229 VIVGADRIAANGDVANKIGTYQLAIAAKYHGVPFYVAAPSSTIDLTLADGKEIPIEERDPEEVTEVGGVRIAPEGVKVYN 308
                        330
                 ....*....|....*....
gi 17557462  335 PAFDVTPAHLITKILTDFG 353
Cdd:PRK05720 309 PAFDVTPAELITGIITEKG 327
eIF-2B_rel TIGR00524
eIF-2B alpha/beta/delta-related uncharacterized proteins; This model, eIF-2B_rel, describes ...
55-357 1.74e-102

eIF-2B alpha/beta/delta-related uncharacterized proteins; This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins. [Unknown function, General]


Pssm-ID: 273119 [Multi-domain]  Cd Length: 303  Bit Score: 304.36  E-value: 1.74e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462    55 VSDAFAVIKSMQVRGAPLIAVVGSLGLLLEIQKASELDSESIIQKI----NFLISSRPTAVDLRNSLNGLKPILESQDys 130
Cdd:TIGR00524   4 YEDVAEAIKSMVVRGAPAIGVAAAYGLALAALKISHVNVEEFKEDLekaaDFLLSTRPTAVNLFWALDRVLNSLKSGE-- 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462   131 dvvKLEKCRSYLLN---VYTDEKLQNRILVWNAYQELLsafpdKEKLTVMTICNTGSLATISWGTALGVIRALHSENRLK 207
Cdd:TIGR00524  82 ---SVEEFKESLLReaiEIINEDLETNRKIGENGAKLI-----KDGDTVLTHCNAGALATSGYGTALGVIRSAWEDGKRI 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462   208 LVYVLETRPYNQGIRLTSIELLHGEVPFKLITDSMAAWAMKNHQVDCVLTGADNVARNGDTANKIGTYMLAVLCKHHNIN 287
Cdd:TIGR00524 154 RVIADETRPRNQGSRLTAWELVQDGIPVTLITDSAAAYFMQTGEIDAVIVGADRIARNGDVANKIGTYQLAVLAKEFRIP 233
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462   288 FYPVVPFTTINKNIATGEEIKIEERPSAEMLRVNGVLIGNSECPVWNPAFDVTPAHLITKILTDFGNWPP 357
Cdd:TIGR00524 234 FFVAAPLSTFDPKTSTGEDIIIEERDPEEVAQVGGVRIAPLGVKVYNPAFDITPHDLIDAIITEKGIITP 303
PRK08334 PRK08334
S-methyl-5-thioribose-1-phosphate isomerase;
27-357 2.49e-80

S-methyl-5-thioribose-1-phosphate isomerase;


Pssm-ID: 169386  Cd Length: 356  Bit Score: 249.88  E-value: 2.49e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462   27 SLKFDGTNLEVLDQLLLPHEFKYIPVEGVSDAFAVIKSMQVRGAPLIAVVGSLGLLL--EIQKASELDS--ESIIQKINF 102
Cdd:PRK08334  16 SVEYEEGKVYMIDQRLLPREFKVIELRTVEEVAEAIKTMTVRGAPAIGAAAAFGLALyaETSKAKTKDEfmDGFYKAYET 95
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462  103 LISSRPTAVDLRNSLNGLKPILESQDYSDVVKLEKCRSYLLNVYTDEKLQNRILVWNAYQELLsafPDKeklTVMTICNT 182
Cdd:PRK08334  96 LKNTRPTAVNLFWALNRIKKLVEEHLEDPLDEIKRLIVEEAQKIADEDVEANLRMGHYGAEVL---PEG---NVLTHCNA 169
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462  183 GSLATISWGTALGVIRALHSENRLKLVYVLETRPYNQGIRLTSIELLHGEVPFKLITDSMAAWAMKNHQVDCVLTGADNV 262
Cdd:PRK08334 170 GSLATVHLGTVGAVLRVMHKDGTLKLLWVDETRPVLQGARLSAWEYHYDGIPLKLISDNMAGFVMQQGKVDAIIVGADRI 249
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462  263 ARNGDTANKIGTYMLAVLCKHHNINFYPVVPFTTINKNIATGEEIKIEERPSAEMLRVNGVLIGnSECPVWNPAFDVTPA 342
Cdd:PRK08334 250 VANGDFANKIGTYTLAVLAKEHGIPFFTVAPLSTIDMSLKSGKEIPIEERSPEEVLTCGGCRIA-PDVDVYNPAFDVTPH 328
                        330
                 ....*....|....*.
gi 17557462  343 HLITKILTDFG-NWPP 357
Cdd:PRK08334 329 KYLTGIITDRGvVWPP 344
PRK06036 PRK06036
S-methyl-5-thioribose-1-phosphate isomerase;
37-364 1.91e-76

S-methyl-5-thioribose-1-phosphate isomerase;


Pssm-ID: 180362  Cd Length: 339  Bit Score: 239.24  E-value: 1.91e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462   37 VLDQLLLPHEFKYIPVEGVSDAFAVIKSMQVRGAPLIAVVGSLGLLLEIQKASELDSESIIQKIN----FLISSRPTAVD 112
Cdd:PRK06036  15 LIDQTLLPEEYKVIECKTLESLCEAIKSLRVRGAPALGAAGGYGIALAARLSKAKDVDELLKDLKvaaeTLKSTRPTAVN 94
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462  113 LRNSLN-GLKPILESQDYSDV--VKLEKCRSYllnvyTDEKLQNRILVWNAYQELLsafpdKEKLTVMTICNTGSLATIS 189
Cdd:PRK06036  95 LSWGVDrVLKAALDAEDVEEIrdIALREAERI-----AEEDVARNKLIGKHGAKLL-----EDGDTVLTHCNAGRLACVD 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462  190 WGTALGVIR-ALHSENRLKlVYVLETRPYNQGIRLTSIELLHGEVPFKLITDSMAAWAMKNHQVDCVLTGADNVARNGdT 268
Cdd:PRK06036 165 WGTALGVIRsAVEQGKEIK-VIACETRPLNQGSRLTTWELMQDNIPVTLITDSMAGIVMRQGMVDKVIVGADRITRDA-V 242
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462  269 ANKIGTYMLAVLCKHHNINFYPVVPFTTINKNiATGEEIKIEERPSAEMLRVNGVLIGNSECPVWNPAFDVTPAHLITKI 348
Cdd:PRK06036 243 FNKIGTYTHSVLAKEHEIPFYVAAPLSTFDFE-GWEGSVKIEERDPDELRYCGKTQIAPKDVPVYNPAFDATPMENVTAI 321
                        330
                 ....*....|....*.
gi 17557462  349 LTDFGNWPPEMLEQQI 364
Cdd:PRK06036 322 ITEKGVFYPPFLLDEV 337
PRK06371 PRK06371
S-methyl-5-thioribose-1-phosphate isomerase;
20-362 6.61e-70

S-methyl-5-thioribose-1-phosphate isomerase;


Pssm-ID: 180547  Cd Length: 329  Bit Score: 222.08  E-value: 6.61e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462   20 DESKRLDSLKFDGTNLEVLDQLLLPHEFKYIPVEGVSDAFAVIKSMQVRGAPLIAVVGSLGLLLeiqkaSELDSESIIQK 99
Cdd:PRK06371   7 GETKTLKAVWYEDGEVKLIDQRKLPDKIEIFEAKNSDDVAYAIKNMVVRGAPAIGVTAAYGLAM-----ASKNGENMDEA 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462  100 INFLISSRPTAVDLRNSLNglkpILESQDYSdvvkLEKCRSYLLNVYTDEKLQNRI---LVWNAYQellsafpdkekltV 176
Cdd:PRK06371  82 VEKIRSTRPTAYDLFKAIR----YMNSNEFD----MNAARRYAMEIIGRSKKIGEYgneLIKNGAR-------------I 140
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462  177 MTICNTGSLATISWGTALGVIRALHSENRLKLVYVLETRPYNQGIRLTSIELLHGEVPFKLITDSMAAWAMKNHQVDCVL 256
Cdd:PRK06371 141 LTHCNAGALAVVDWGTALAPIRIAHRNGKNIFVFVDETRPRLQGARLTAWELAQEGIDHAIIADNAAGYFMRKKEIDLVI 220
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462  257 TGADNVARNGDTANKIGTYMLAVLCKHHNINFYPVVPFTTINKNIATGEEIKIEERPSAEMLRVNGVLIGNSECPVWNPA 336
Cdd:PRK06371 221 VGADRIASNGDFANKIGTYEKAVLAKVNGIPFYVAAPGSTFDFSIKSGDEIPIEERDENEVLEINGCRIGPQESHARNPA 300
                        330       340
                 ....*....|....*....|....*.
gi 17557462  337 FDVTPAHLITKILTDFGNWPPEMLEQ 362
Cdd:PRK06371 301 FDVTPNEYVTGFITEYGIFKPNELWK 326
PRK05772 PRK05772
S-methyl-5-thioribose-1-phosphate isomerase;
32-366 6.62e-55

S-methyl-5-thioribose-1-phosphate isomerase;


Pssm-ID: 168237  Cd Length: 363  Bit Score: 184.19  E-value: 6.62e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462   32 GTNLEVLDQLLLPHEFKYIPVEGVSDAFAVIKSMQVRGAPLIAVVGSLGLLLEIQKASELDSESIIQKI----NFLISSR 107
Cdd:PRK05772  23 DNTLTLLDQSLLPFETVYVDLKTVEEVALAIRNMQVRGAPAIGITAGYGMVLALIENNVKTLDDAIRELtrakTILDSAR 102
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462  108 PTAVDL----RNSLNGLKPILESQDYSDVVKLEKCRSYLLNVYTDEKLQNRILVWNAYQELLSAFPdkeklTVMTICNTG 183
Cdd:PRK05772 103 PTAVNLvwatSRMLNKAKNTVESGNAKSVNELIELLKVEAKKIFEEEYDAEIQMGLYGLEKLNDGD-----TVLTQCNAG 177
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462  184 SLAT-ISWGTALGVIRALHSENRLKLVYVLETRPYNQGIRLTSIELLHGEVPFKLITDSMAAWAMKNHQVDCVLTGADNV 262
Cdd:PRK05772 178 GLATgTGLGTALAPVKLAKALGMSVSVIAPETRPWLQGSRLTVYELMEEGIKVTLITDTAVGLVMYKDMVNNVMVGADRI 257
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462  263 ARNGDTANKIGTYMLAVLCKHHNINFYPVVPFTTINKnIATGEEIKIEERPSAEMLRVNGVLIGNSECPVWNPAFDVTPA 342
Cdd:PRK05772 258 LRDGHVFNKIGTFKEAVIAHELGIPFYALAPTSTFDL-KSDVNDVKIEERDPNEVRTIRGVPITPEDVNVYNPVFDVTPP 336
                        330       340
                 ....*....|....*....|....*
gi 17557462  343 HLITKILTDFG-NWPPemLEQQIPK 366
Cdd:PRK05772 337 KYITGIITEKGiIYPP--FHKNIRK 359
GCD2 COG1184
Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ...
62-361 2.64e-47

Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]; Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family is part of the Pathway/BioSystem: Translation factors


Pssm-ID: 440797 [Multi-domain]  Cd Length: 304  Bit Score: 162.71  E-value: 2.64e-47
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462  62 IKSMQVRGAPLIAV--VGSLGLLLEIQKASELD--SESIIQKINFLISSRPTAVDLRNSLNGLKpilesQDYSDVVKLEK 137
Cdd:COG1184  11 IREMEIHGAARIARaaAEALRDLAERSRAADPEefRRELEAAARALRRARPSAASLPNAVRRVL-----ARVADGETVEE 85
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462 138 CRSYLLNVyTDEkLQNRIL--VWNAYQELLSAFPDKEklTVMTICNTGslatiswgTALGVIRALHSENRLKLVYVLETR 215
Cdd:COG1184  86 AREAVLEA-ADE-FIERAEeaKERAAEIAAKRIRDGD--TILTHSNSS--------TVLAAIEAAVPQGKDIRVYVTESR 153
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462 216 PYNQGiRLTSIELLHGEVPFKLITDSMAAWAMKnhQVDCVLTGADNVARNGDTANKIGTYMLAVLCKHHNINFYPV---- 291
Cdd:COG1184 154 PRYQG-RITARELAEAGVPVTLIVDSAARHFLK--EVDRVVVGADTITADGAVVNKIGTSPLALAAREAGVPVTVAaety 230
                       250       260       270       280       290       300       310
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 17557462 292 --VPfttinkniATGEEIKIEERPSAEMLR--VNGVlignsecPVWNPAFDVTPAHLITKILTDFGNWPPEMLE 361
Cdd:COG1184 231 kfSP--------ETFELVEIEERDPSEVYDeePEGV-------TVRNPAFDVTPPDLIDAIITERGVLPPEAIY 289
PRK08535 PRK08535
ribose 1,5-bisphosphate isomerase;
49-359 2.00e-46

ribose 1,5-bisphosphate isomerase;


Pssm-ID: 236282 [Multi-domain]  Cd Length: 310  Bit Score: 160.45  E-value: 2.00e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462   49 YIPVEGVSDAFAVIKSMQVRGAPLIAVVGSLGLLLEIQKASELDSESIIQKI----NFLISSRPTAVDLRNSLNglkPIL 124
Cdd:PRK08535   1 MEVMPEVLETAEKIKTMEIRGAGRIARAAAEALKDQAEKSDAESPEEFKAEMraaaNILISTRPTAVSLPNAVR---YVM 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462  125 ESQDYSDVvklEKCRSYLLN-----VYTDEKLQNRILVWNAyqellSAFPDKEklTVMTICNtgSLAtiswgtALGVIRA 199
Cdd:PRK08535  78 RYYSGETV---EEARESVIEraeefIESSENAVEKIGEIGA-----KRIRDGD--VIMTHCN--SSA------ALSVIKT 139
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462  200 LHSENRLKLVYVLETRPYNQGiRLTSIELLHGEVPFKLITDSMAAWAMKNhqVDCVLTGADNVARNGDTANKIGTYMLAV 279
Cdd:PRK08535 140 AHEQGKDIEVIATETRPRNQG-HITAKELAEYGIPVTLIVDSAVRYFMKD--VDKVVVGADAITANGAVINKIGTSQIAL 216
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462  280 LCKHHNINF------YPVVPFTTInkniatGEEIKIEERPSAEMLRvNGVLIGNSECPVWNPAFDVTPAHLITKILTDFG 353
Cdd:PRK08535 217 AAHEARVPFmvaaetYKFSPKTLL------GELVEIEERDPTEVLP-EEILAKLPGVKVRNPAFDVTPPEYIDAIITEIG 289

                 ....*.
gi 17557462  354 NWPPEM 359
Cdd:PRK08535 290 AIPPEM 295
ribulose_e2b2 TIGR00511
ribose-1,5-bisphosphate isomerase, e2b2 family; The delineation of this family was based ...
62-359 1.13e-44

ribose-1,5-bisphosphate isomerase, e2b2 family; The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase. [Energy metabolism, Other]


Pssm-ID: 188057  Cd Length: 301  Bit Score: 155.65  E-value: 1.13e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462    62 IKSMQVRGAPLIAVVGSLGLLLEIQKASELDSESIIQKI----NFLISSRPTAVDLRNSLNGLKPILESQDysdvvkLEK 137
Cdd:TIGR00511   9 IRTMEIRGAGRIARAAAAALREQAEKSDAASPEEFRAEMraaaNILISTRPTAVSLPNALRYVLKYMSGAD------VET 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462   138 CRSYLLN-----VYTDEKLQNRILVWNAYQellsaFPDKEklTVMTICNTGSlatiswgtALGVIRALHSENRLKLVYVL 212
Cdd:TIGR00511  83 LRQSVIEradefINRSEKAQERIGEIGAKR-----IRDGD--VIMTHCNSEA--------ALSVIKTAFEQGKDIEVIVT 147
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462   213 ETRPYNQGiRLTSIELLHGEVPFKLITDSMAAWAMKnhQVDCVLTGADNVARNGDTANKIGTYMLAVLCKHHNINFypVV 292
Cdd:TIGR00511 148 ETRPRNQG-HITAKELRDYGIPVTLIVDSAARYYMK--EVDHVVVGADAITANGAVINKIGTSQLALAAREARVPF--MV 222
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462   293 PFTTIN---KNIaTGEEIKIEERPSAEMLrVNGVLIGNSECPVWNPAFDVTPAHLITKILTDFGNWPPEM 359
Cdd:TIGR00511 223 AAETYKfhpKTI-TGELVEIEERDPTEVL-DEEDLKQLGNVKVRNPAFDVTPPEYVDAIITERGQIPPEM 290
PRK08335 PRK08335
translation initiation factor IF-2B subunit alpha; Validated
192-353 1.00e-13

translation initiation factor IF-2B subunit alpha; Validated


Pssm-ID: 169387  Cd Length: 275  Bit Score: 70.58  E-value: 1.00e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462  192 TALGVIRALHSENRLKLVYVLETRPYNQGIRLTSiELLHGEVPFKLITDSMAAWAMKNHQVdcVLTGADNVARNGDTANK 271
Cdd:PRK08335 121 AVLEILKTAKRKGKRFKVILTESAPDYEGLALAN-ELEFLGIEFEVITDAQLGLFAKEATL--ALVGADNVTRDGYVVNK 197
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462  272 IGTYMLAVLCKHHNINFYPVVPFTTINKNIaTGEEIKIEERPSA-EMLRVNGVLignsecpvwnpaFDVTPAHLITKILT 350
Cdd:PRK08335 198 AGTYLLALACHDNGVPFYVAAETFKFHPEL-KSEEVELVERPYArQGHRVRNVL------------FDVTPWKYVRGIIT 264

                 ...
gi 17557462  351 DFG 353
Cdd:PRK08335 265 ELG 267
PRK06372 PRK06372
translation initiation factor IF-2B subunit delta; Provisional
181-353 1.49e-10

translation initiation factor IF-2B subunit delta; Provisional


Pssm-ID: 235788 [Multi-domain]  Cd Length: 253  Bit Score: 61.08  E-value: 1.49e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462  181 NTGSLATISWGTALGVIraLHSENRLKLVYVLETRPYNQGIRLTSiELLHGEVPFKLITDSMAAWAMKNhqVDCVLTGAD 260
Cdd:PRK06372  86 NDSVIGTISSSQVLKAF--ISSSEKIKSVYILESRPMLEGIDMAK-LLVKSGIDVVLLTDASMCEAVLN--VDAVIVGSD 160
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17557462  261 NVARNGDTANKIGTYMLAVLCKHHNINFYPVVPFTTINKNIATGEEIKIEERPSAEMlrvngvligNSECPVWNPAFDVT 340
Cdd:PRK06372 161 SVLYDGGLIHKNGTFPLALCARYLKKPFYSLTISMKIERNFLYSTYPNFKNHPCSEW---------NIDIPCINRYFDKT 231
                        170
                 ....*....|...
gi 17557462  341 PAHLITKILTDFG 353
Cdd:PRK06372 232 PPDLIDYYINENG 244
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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