NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|17568459|ref|NP_510255|]
View 

DM13 domain-containing protein [Caenorhabditis elegans]

Protein Classification

DM13 domain-containing protein( domain architecture ID 10653480)

DM13 domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DM13 smart00686
Domain present in fly proteins (CG14681, CG12492, CG6217), worm H06A10.1 and Arabidopsis ...
 157-270 4.31e-44

Domain present in fly proteins (CG14681, CG12492, CG6217), worm H06A10.1 and Arabidopsis thaliana MBG8.9;


:

Pssm-ID: 128929  Cd Length: 108  Bit Score: 145.58  E-value: 4.31e-44
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17568459    157 FGEYGIISDPIEVIDSRTLKIPKFSYKaSQTPDGYFFAGAGSEIDQKSGKKaailRSDQTLnYCPMLKDITDQDIIIRLD 236
Cdd:smart00686   1 SLQHGVSSDPVEIVDAKTLRIPNFSYD-GSGPDAYFWVGAGSRPDNEGGKK----VPDEYG-YCNPLRRYHNEDIVLRLP 74

                           90       100       110
                   ....*....|....*....|....*....|....
gi 17568459    237 QSQTIYDIEWISVFCYKYSHDFGHLDMGLVENEE 270
Cdd:smart00686  75 ESLTIDDIKWFSVWCLKTAHNFGHVLFPENLNIP 108
 
Name Accession Description Interval E-value
DM13 smart00686
Domain present in fly proteins (CG14681, CG12492, CG6217), worm H06A10.1 and Arabidopsis ...
 157-270 4.31e-44

Domain present in fly proteins (CG14681, CG12492, CG6217), worm H06A10.1 and Arabidopsis thaliana MBG8.9;


Pssm-ID: 128929  Cd Length: 108  Bit Score: 145.58  E-value: 4.31e-44
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17568459    157 FGEYGIISDPIEVIDSRTLKIPKFSYKaSQTPDGYFFAGAGSEIDQKSGKKaailRSDQTLnYCPMLKDITDQDIIIRLD 236
Cdd:smart00686   1 SLQHGVSSDPVEIVDAKTLRIPNFSYD-GSGPDAYFWVGAGSRPDNEGGKK----VPDEYG-YCNPLRRYHNEDIVLRLP 74

                           90       100       110
                   ....*....|....*....|....*....|....
gi 17568459    237 QSQTIYDIEWISVFCYKYSHDFGHLDMGLVENEE 270
Cdd:smart00686  75 ESLTIDDIKWFSVWCLKTAHNFGHVLFPENLNIP 108
DM13 pfam10517
Electron transfer DM13; The DM13 domain is a component of a novel electron-transfer system ...
 163-260 4.42e-12

Electron transfer DM13; The DM13 domain is a component of a novel electron-transfer system potentially involved in oxidative modification of animal cell-surface proteins. It contains a nearly absolutely conserved cysteine, which could be involved in a redox reaction, either as a naked thiol group or through binding a prosthetic group like heme.


Pssm-ID: 463130  Cd Length: 105  Bit Score: 61.49  E-value: 4.42e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17568459   163 ISDPIEVIDSRTLKIPKFSYkASQTPDGYFFAGAGSeidQKSGKKAAILRSDQTLNYCPmLKDIT-DQDIIIRLDQSQTI 241
Cdd:pfam10517   9 TSGTVYIVDDRTLELEGFAT-DGPGPDLYVWLGDSP---VPSGKDGFKVPDEDGVTLGP-LKGYSgEQRYTLTLPAGVDL 83

                          90
                  ....*....|....*....
gi 17568459   242 YDIEWISVFCYKYSHDFGH 260
Cdd:pfam10517  84 ADYKSVSIWCERFNVNFGA 102
 
Name Accession Description Interval E-value
DM13 smart00686
Domain present in fly proteins (CG14681, CG12492, CG6217), worm H06A10.1 and Arabidopsis ...
 157-270 4.31e-44

Domain present in fly proteins (CG14681, CG12492, CG6217), worm H06A10.1 and Arabidopsis thaliana MBG8.9;


Pssm-ID: 128929  Cd Length: 108  Bit Score: 145.58  E-value: 4.31e-44
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17568459    157 FGEYGIISDPIEVIDSRTLKIPKFSYKaSQTPDGYFFAGAGSEIDQKSGKKaailRSDQTLnYCPMLKDITDQDIIIRLD 236
Cdd:smart00686   1 SLQHGVSSDPVEIVDAKTLRIPNFSYD-GSGPDAYFWVGAGSRPDNEGGKK----VPDEYG-YCNPLRRYHNEDIVLRLP 74

                           90       100       110
                   ....*....|....*....|....*....|....
gi 17568459    237 QSQTIYDIEWISVFCYKYSHDFGHLDMGLVENEE 270
Cdd:smart00686  75 ESLTIDDIKWFSVWCLKTAHNFGHVLFPENLNIP 108
DM13 pfam10517
Electron transfer DM13; The DM13 domain is a component of a novel electron-transfer system ...
 163-260 4.42e-12

Electron transfer DM13; The DM13 domain is a component of a novel electron-transfer system potentially involved in oxidative modification of animal cell-surface proteins. It contains a nearly absolutely conserved cysteine, which could be involved in a redox reaction, either as a naked thiol group or through binding a prosthetic group like heme.


Pssm-ID: 463130  Cd Length: 105  Bit Score: 61.49  E-value: 4.42e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17568459   163 ISDPIEVIDSRTLKIPKFSYkASQTPDGYFFAGAGSeidQKSGKKAAILRSDQTLNYCPmLKDIT-DQDIIIRLDQSQTI 241
Cdd:pfam10517   9 TSGTVYIVDDRTLELEGFAT-DGPGPDLYVWLGDSP---VPSGKDGFKVPDEDGVTLGP-LKGYSgEQRYTLTLPAGVDL 83

                          90
                  ....*....|....*....
gi 17568459   242 YDIEWISVFCYKYSHDFGH 260
Cdd:pfam10517  84 ADYKSVSIWCERFNVNFGA 102
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH