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Conserved domains on  [gi|17570419|ref|NP_510397|]
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C3H1-type domain-containing protein [Caenorhabditis elegans]

Protein Classification

zinc finger CCCH domain-containing protein( domain architecture ID 10457906)

zinc finger CCCH domain-containing protein similar to Homo sapiens proline-rich protein 3 (PRR3)

CATH:  4.10.1000.10
Gene Ontology:  GO:0046872|GO:0003676
PubMed:  12665246|27990022
SCOP:  3001741

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
130-154 1.43e-06

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


:

Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 43.34  E-value: 1.43e-06
                          10        20
                  ....*....|....*....|....*
gi 17570419   130 YKTVLCNKFSTTGHCKYGIRCQFIH 154
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAH 25
CTH1 super family cl34885
CCCH-type Zn-finger protein [General function prediction only];
95-154 3.76e-05

CCCH-type Zn-finger protein [General function prediction only];


The actual alignment was detected with superfamily member COG5063:

Pssm-ID: 227395 [Multi-domain]  Cd Length: 351  Bit Score: 43.50  E-value: 3.76e-05
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 17570419  95 GFHRRGQkCAY---GEKCKFAHSVHELRFPQTKRNHRNYKTVLCNKFSTTGHCKYGIRCQFIH 154
Cdd:COG5063 235 SFTRKGT-CPYwisGVKCQFACRGHGLNELKSKKKKQNFRTEPCINWEKSGYCPYGLRCCFKH 296
 
Name Accession Description Interval E-value
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
130-154 1.43e-06

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 43.34  E-value: 1.43e-06
                          10        20
                  ....*....|....*....|....*
gi 17570419   130 YKTVLCNKFSTTGHCKYGIRCQFIH 154
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAH 25
CTH1 COG5063
CCCH-type Zn-finger protein [General function prediction only];
95-154 3.76e-05

CCCH-type Zn-finger protein [General function prediction only];


Pssm-ID: 227395 [Multi-domain]  Cd Length: 351  Bit Score: 43.50  E-value: 3.76e-05
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 17570419  95 GFHRRGQkCAY---GEKCKFAHSVHELRFPQTKRNHRNYKTVLCNKFSTTGHCKYGIRCQFIH 154
Cdd:COG5063 235 SFTRKGT-CPYwisGVKCQFACRGHGLNELKSKKKKQNFRTEPCINWEKSGYCPYGLRCCFKH 296
ZnF_C3H1 smart00356
zinc finger;
129-154 1.19e-04

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 37.99  E-value: 1.19e-04
                           10        20
                   ....*....|....*....|....*.
gi 17570419    129 NYKTVLCNKFsTTGHCKYGIRCQFIH 154
Cdd:smart00356   1 KYKTELCKFF-KRGYCPRGDRCKFAH 25
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
89-115 3.15e-03

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 34.09  E-value: 3.15e-03
                          10        20
                  ....*....|....*....|....*..
gi 17570419    89 FKTSLYGFHRRGQKCAYGEKCKFAHSV 115
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
 
Name Accession Description Interval E-value
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
130-154 1.43e-06

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 43.34  E-value: 1.43e-06
                          10        20
                  ....*....|....*....|....*
gi 17570419   130 YKTVLCNKFSTTGHCKYGIRCQFIH 154
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAH 25
CTH1 COG5063
CCCH-type Zn-finger protein [General function prediction only];
95-154 3.76e-05

CCCH-type Zn-finger protein [General function prediction only];


Pssm-ID: 227395 [Multi-domain]  Cd Length: 351  Bit Score: 43.50  E-value: 3.76e-05
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 17570419  95 GFHRRGQkCAY---GEKCKFAHSVHELRFPQTKRNHRNYKTVLCNKFSTTGHCKYGIRCQFIH 154
Cdd:COG5063 235 SFTRKGT-CPYwisGVKCQFACRGHGLNELKSKKKKQNFRTEPCINWEKSGYCPYGLRCCFKH 296
CTH1 COG5063
CCCH-type Zn-finger protein [General function prediction only];
82-154 5.45e-05

CCCH-type Zn-finger protein [General function prediction only];


Pssm-ID: 227395 [Multi-domain]  Cd Length: 351  Bit Score: 43.12  E-value: 5.45e-05
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 17570419  82 SKKKEEAFKTSLYGFHRRGQKCAYGEKCKFAHSVHELRFPQTkrnHRNYKTVLCNKFSTTGHCKYGIRCQFIH 154
Cdd:COG5063 106 ANKPYGLYKTEMLRSSTEIPYCRYPDKNPFAHSKAISSLAQT---HPKYKTESLEVFINPGYVPYSKRCCFIS 175
ZnF_C3H1 smart00356
zinc finger;
129-154 1.19e-04

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 37.99  E-value: 1.19e-04
                           10        20
                   ....*....|....*....|....*.
gi 17570419    129 NYKTVLCNKFsTTGHCKYGIRCQFIH 154
Cdd:smart00356   1 KYKTELCKFF-KRGYCPRGDRCKFAH 25
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
89-115 3.15e-03

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 34.09  E-value: 3.15e-03
                          10        20
                  ....*....|....*....|....*..
gi 17570419    89 FKTSLYGFHRRGQKCAYGEKCKFAHSV 115
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
CTH1 COG5063
CCCH-type Zn-finger protein [General function prediction only];
81-154 5.60e-03

CCCH-type Zn-finger protein [General function prediction only];


Pssm-ID: 227395 [Multi-domain]  Cd Length: 351  Bit Score: 36.95  E-value: 5.60e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 17570419  81 RSKKKEEAFKTSLYGFHRRGQKCAYGEKCKFAHSVHELRFPQTKRNHRNYKTVlCNKFSTTGHCKYGIRCQFIH 154
Cdd:COG5063 264 KSKKKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYEEASLGYLDGP-CRTRAKGGAFPSGGAVCKSF 336
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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