NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|17567651|ref|NP_510720|]
View 

DYnein Light chain, Axonemal p28 type [Caenorhabditis elegans]

Protein Classification

dynein arm light chain( domain architecture ID 11185876)

axonemal dynein arm light chain plays a dynamic role in flagellar and cilia motility

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Ax_dynein_light pfam10211
Axonemal dynein light chain; Axonemal dynein light chain proteins play a dynamic role in ...
 69-253 9.82e-76

Axonemal dynein light chain; Axonemal dynein light chain proteins play a dynamic role in flagellar and cilia motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organizms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains.


:

Pssm-ID: 463000 [Multi-domain]  Cd Length: 187  Bit Score: 228.23  E-value: 9.82e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17567651    69 ILDCILPPRVYEQNGKLWKQQASLHPATRHDMINLEEKLESELKDRGAKPFGICPIRRDLYGQFFDELIRQVSVSCVERG 148
Cdd:pfam10211   3 ILNSILPPREWEEDGQLWIQQVSSTPATRLDVINLQEKLDTRLQQRQARETGICPIREELYSQCFDELIRQVTINCPERG 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17567651   149 LLLVRVRDEIRMTFAAYQNVLESAIAYGVRKALfiENEQTRATTEWKVQ--KDKNKELHLKIAQLEKKLATDKIVSEEEL 226
Cdd:pfam10211  83 LLLLRVRDELRMTIAAYQTLYESSVAFGMRKAL--QAEQGKAELEKKIAdlEEEKEELEKQVAELKAKCEAIEKREEERR 160

                         170       180
                  ....*....|....*....|....*..
gi 17567651   227 EIVEQRMKDTNERLVESNRILKNQLQS 253
Cdd:pfam10211 161 QAEEKKHAEEIAFLKKTNQQLKAQLER 187
 
Name Accession Description Interval E-value
Ax_dynein_light pfam10211
Axonemal dynein light chain; Axonemal dynein light chain proteins play a dynamic role in ...
 69-253 9.82e-76

Axonemal dynein light chain; Axonemal dynein light chain proteins play a dynamic role in flagellar and cilia motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organizms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains.


Pssm-ID: 463000 [Multi-domain]  Cd Length: 187  Bit Score: 228.23  E-value: 9.82e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17567651    69 ILDCILPPRVYEQNGKLWKQQASLHPATRHDMINLEEKLESELKDRGAKPFGICPIRRDLYGQFFDELIRQVSVSCVERG 148
Cdd:pfam10211   3 ILNSILPPREWEEDGQLWIQQVSSTPATRLDVINLQEKLDTRLQQRQARETGICPIREELYSQCFDELIRQVTINCPERG 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17567651   149 LLLVRVRDEIRMTFAAYQNVLESAIAYGVRKALfiENEQTRATTEWKVQ--KDKNKELHLKIAQLEKKLATDKIVSEEEL 226
Cdd:pfam10211  83 LLLLRVRDELRMTIAAYQTLYESSVAFGMRKAL--QAEQGKAELEKKIAdlEEEKEELEKQVAELKAKCEAIEKREEERR 160

                         170       180
                  ....*....|....*....|....*..
gi 17567651   227 EIVEQRMKDTNERLVESNRILKNQLQS 253
Cdd:pfam10211 161 QAEEKKHAEEIAFLKKTNQQLKAQLER 187
 
Name Accession Description Interval E-value
Ax_dynein_light pfam10211
Axonemal dynein light chain; Axonemal dynein light chain proteins play a dynamic role in ...
 69-253 9.82e-76

Axonemal dynein light chain; Axonemal dynein light chain proteins play a dynamic role in flagellar and cilia motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organizms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains.


Pssm-ID: 463000 [Multi-domain]  Cd Length: 187  Bit Score: 228.23  E-value: 9.82e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17567651    69 ILDCILPPRVYEQNGKLWKQQASLHPATRHDMINLEEKLESELKDRGAKPFGICPIRRDLYGQFFDELIRQVSVSCVERG 148
Cdd:pfam10211   3 ILNSILPPREWEEDGQLWIQQVSSTPATRLDVINLQEKLDTRLQQRQARETGICPIREELYSQCFDELIRQVTINCPERG 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17567651   149 LLLVRVRDEIRMTFAAYQNVLESAIAYGVRKALfiENEQTRATTEWKVQ--KDKNKELHLKIAQLEKKLATDKIVSEEEL 226
Cdd:pfam10211  83 LLLLRVRDELRMTIAAYQTLYESSVAFGMRKAL--QAEQGKAELEKKIAdlEEEKEELEKQVAELKAKCEAIEKREEERR 160

                         170       180
                  ....*....|....*....|....*..
gi 17567651   227 EIVEQRMKDTNERLVESNRILKNQLQS 253
Cdd:pfam10211 161 QAEEKKHAEEIAFLKKTNQQLKAQLER 187
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH