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Conserved domains on  [gi|17647187|ref|NP_523747|]
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boundary element-associated factor of 32kD, isoform A [Drosophila melanogaster]

Protein Classification

ZnF_BED and BESS domain-containing protein( domain architecture ID 10652359)

ZnF_BED and BESS domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ZnF_BED smart00614
BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and ...
 31-74 3.35e-12

BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and transposases


:

Pssm-ID: 214746 [Multi-domain]  Cd Length: 50  Bit Score: 60.13  E-value: 3.35e-12
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 17647187     31 CVWRFFNLVQCDDHIEPYACCKTCGDLLSYSGKTGTGSLLRHRC 74
Cdd:smart00614   1 KVWKHFTLILEKDNGKQRAKCKYCGKKLSRSSKGGTSNLRRHLR 44
BESS pfam02944
BESS motif; The BESS motif is named after the proteins in which it is found (BEAF, Suvar(3)7 ...
 238-272 9.81e-10

BESS motif; The BESS motif is named after the proteins in which it is found (BEAF, Suvar(3)7 and Stonewall). The motif is 40 amino acid residues long and is composed of two predicted alpha helices. Based on the protein in which it is found and the presence of conserved positively charged residues it is predicted to be a DNA binding domain. This domain appears to be specific to drosophila.


:

Pssm-ID: 460758  Cd Length: 35  Bit Score: 52.77  E-value: 9.81e-10
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 17647187   238 DDDYYFALSLVPAMRHLSLSRKMYVRSKIQDILFK 272
Cdd:pfam02944   1 DSDDLFLLSLLPTMKRLPPKQKLKFKIKILQLLQE 35
 
Name Accession Description Interval E-value
ZnF_BED smart00614
BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and ...
 31-74 3.35e-12

BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and transposases


Pssm-ID: 214746 [Multi-domain]  Cd Length: 50  Bit Score: 60.13  E-value: 3.35e-12
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 17647187     31 CVWRFFNLVQCDDHIEPYACCKTCGDLLSYSGKTGTGSLLRHRC 74
Cdd:smart00614   1 KVWKHFTLILEKDNGKQRAKCKYCGKKLSRSSKGGTSNLRRHLR 44
BESS pfam02944
BESS motif; The BESS motif is named after the proteins in which it is found (BEAF, Suvar(3)7 ...
 238-272 9.81e-10

BESS motif; The BESS motif is named after the proteins in which it is found (BEAF, Suvar(3)7 and Stonewall). The motif is 40 amino acid residues long and is composed of two predicted alpha helices. Based on the protein in which it is found and the presence of conserved positively charged residues it is predicted to be a DNA binding domain. This domain appears to be specific to drosophila.


Pssm-ID: 460758  Cd Length: 35  Bit Score: 52.77  E-value: 9.81e-10
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 17647187   238 DDDYYFALSLVPAMRHLSLSRKMYVRSKIQDILFK 272
Cdd:pfam02944   1 DSDDLFLLSLLPTMKRLPPKQKLKFKIKILQLLQE 35
 
Name Accession Description Interval E-value
ZnF_BED smart00614
BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and ...
 31-74 3.35e-12

BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and transposases


Pssm-ID: 214746 [Multi-domain]  Cd Length: 50  Bit Score: 60.13  E-value: 3.35e-12
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 17647187     31 CVWRFFNLVQCDDHIEPYACCKTCGDLLSYSGKTGTGSLLRHRC 74
Cdd:smart00614   1 KVWKHFTLILEKDNGKQRAKCKYCGKKLSRSSKGGTSNLRRHLR 44
BESS pfam02944
BESS motif; The BESS motif is named after the proteins in which it is found (BEAF, Suvar(3)7 ...
 238-272 9.81e-10

BESS motif; The BESS motif is named after the proteins in which it is found (BEAF, Suvar(3)7 and Stonewall). The motif is 40 amino acid residues long and is composed of two predicted alpha helices. Based on the protein in which it is found and the presence of conserved positively charged residues it is predicted to be a DNA binding domain. This domain appears to be specific to drosophila.


Pssm-ID: 460758  Cd Length: 35  Bit Score: 52.77  E-value: 9.81e-10
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 17647187   238 DDDYYFALSLVPAMRHLSLSRKMYVRSKIQDILFK 272
Cdd:pfam02944   1 DSDDLFLLSLLPTMKRLPPKQKLKFKIKILQLLQE 35
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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