|
Name |
Accession |
Description |
Interval |
E-value |
| PLN03025 |
PLN03025 |
replication factor C subunit; Provisional |
16-330 |
0e+00 |
|
replication factor C subunit; Provisional
Pssm-ID: 178596 [Multi-domain] Cd Length: 319 Bit Score: 538.55 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 16 LPWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGDSYKEAVLELNASNERGIDV 95
Cdd:PLN03025 1 LPWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 96 VRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSD 175
Cdd:PLN03025 81 VRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 176 AQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNLQSTAQGFGDITAENVFKVCDEPHPKLLEEMIHHCAANDI 255
Cdd:PLN03025 161 QEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNCLKGKF 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 17647857 256 HKAYKILAKLWKLGYSPEDIIANIFRVCKRINIDEHLKLDFIREIGITHMKIIDGINSLLQLTALLAKLCIAAEK 330
Cdd:PLN03025 241 DDACDGLKQLYDLGYSPTDIITTLFRVVKNYDMPEFLKLEYLREIGFAHMRICDGVGSLLQLSGLLAKLCLVRET 315
|
|
| rfc |
PRK00440 |
replication factor C small subunit; Reviewed |
14-330 |
1.37e-127 |
|
replication factor C small subunit; Reviewed
Pssm-ID: 234763 [Multi-domain] Cd Length: 319 Bit Score: 367.28 E-value: 1.37e-127
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 14 SHLPWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGDSYKEAVLELNASNERGI 93
Cdd:PRK00440 3 MEEIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 94 DVVRNKIKMFAQqkvTLPRG--RHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFT 171
Cdd:PRK00440 83 DVIRNKIKEFAR---TAPVGgaPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 172 KLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNLQSTAQGFGDITAENVFKVCDEPHPKLLEEMIHHCA 251
Cdd:PRK00440 160 PLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQAAAATGKEVTEEAVYKITGTARPEEIREMIELAL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 252 ANDIHKAYKILAKL-WKLGYSPEDIIANIFRVCKRINIDEHLKLDFIREIGITHMKIIDGINSLLQLTALLAKLCIAAEK 330
Cdd:PRK00440 240 NGDFTEAREKLRDLmIDYGLSGEDIIKQIHREVWSLDIPEELKVELIDAIGEADFRITEGANERIQLEALLAKLALLGKK 319
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
54-326 |
2.05e-71 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 237.04 E-value: 2.05e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 54 IAG--PPGVGKTTTIQCLARILLGDSYKEAVLELNASNERGIDVVRNKIKMFAQQKvtlPRG--RHKIVILDEADSMTEG 129
Cdd:PRK04132 569 IGGnlPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTK---PIGgaSFKIIFLDEADALTQD 645
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 130 AQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDM 209
Cdd:PRK04132 646 AQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDM 725
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 210 RQGLNNLQSTAQGFGDITAENVFKVCDEPHPKLLEEMIHHCAANDIHKAYKILAK-LWKLGYSPEDIIANIFRVCKRINI 288
Cdd:PRK04132 726 RRAINILQAAAALDDKITDENVFLVASRARPEDIREMMLLALKGNFLKAREKLREiLLKQGLSGEDVLVQMHREVFNLPI 805
|
250 260 270
....*....|....*....|....*....|....*...
gi 17647857 289 DEHLKLDFIREIGITHMKIIDGINSLLQLTALLAKLCI 326
Cdd:PRK04132 806 DEPKKVELADKIGEYNFRLVEGANEMIQLEALLAQFTL 843
|
|
| PRK12402 |
PRK12402 |
replication factor C small subunit 2; Reviewed |
18-324 |
3.27e-71 |
|
replication factor C small subunit 2; Reviewed
Pssm-ID: 237090 [Multi-domain] Cd Length: 337 Bit Score: 224.48 E-value: 3.27e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 18 WIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGDSYKEAVLELNASN--ERGIDV 95
Cdd:PRK12402 5 WTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADffDQGKKY 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 96 VRNKiKMFAQQKVTLPR-----------------------GRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACN 152
Cdd:PRK12402 85 LVED-PRFAHFLGTDKRirsskidnfkhvlkeyasyrplsADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATR 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 153 TSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNLQSTAQGFGDITAENVF 232
Cdd:PRK12402 164 QPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQTAALAAGEITMEAAY 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 233 KVC-DEPHPKLLEEMIHHCAANDIHKAYKILAKLW-KLGYSPEDIIANIFRVCKRINIDEHLKlDFIREIGITHMKIIDG 310
Cdd:PRK12402 244 EALgDVGTDEVIESLLDAAEAGDFTDARKTLDDLLiDEGLSGGEVLEELLRVARSRYRGDNLA-RLHRLAADADARLTDG 322
|
330
....*....|....
gi 17647857 311 INSLLQLTALLAKL 324
Cdd:PRK12402 323 ANDRIQLEALLAEL 336
|
|
| HolB |
COG0470 |
DNA polymerase III, delta prime subunit [Replication, recombination and repair]; |
33-325 |
3.84e-50 |
|
DNA polymerase III, delta prime subunit [Replication, recombination and repair];
Pssm-ID: 440238 [Multi-domain] Cd Length: 289 Bit Score: 168.61 E-value: 3.84e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 33 NEDTVARL-SVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGDSYKEA------------------VLELNA---SNE 90
Cdd:COG0470 1 QEEAWEQLlAAAESGRLPHALLLHGPPGIGKTTLALALARDLLCENPEGGkacgqchsrlmaagnhpdLLELNPeekSDQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 91 RGIDVVRnKIKMFAQQKVTlpRGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRF 170
Cdd:COG0470 81 IGIDQIR-ELGEFLSLTPL--EGGRKVVIIDEADAMNEAAANALLKTLEEPPKNTPFILIANDPSRLLPTIRSRCQVIRF 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 171 TKLSDAQVLAKLievakwEKLNYTEDGLEAIVFTAQGDMRQGLNNLQSTAQgfGDITAENVFKVCDEPHP-KLLEEMIHH 249
Cdd:COG0470 158 RPPSEEEALAWL------REEGVDEDALEAILRLAGGDPRAAINLLQALAG--RKELLEDLAALLSRDRAlELLDALLKA 229
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 17647857 250 CAANDIHKAYKILAKLWKLGYSPEDIianifrvckrinidehlkLDFIREIGITHMKIIDGINSLLQLTALLAKLC 325
Cdd:COG0470 230 EALELLDWLLKWLLDNLPLEYAGEDL------------------ARAYEALSEADRRLGRYANDRLLLEALLAKLG 287
|
|
| PRK04195 |
PRK04195 |
replication factor C large subunit; Provisional |
16-231 |
8.66e-34 |
|
replication factor C large subunit; Provisional
Pssm-ID: 235250 [Multi-domain] Cd Length: 482 Bit Score: 129.27 E-value: 8.66e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 16 LPWIEKYRPVKFKEIVGNEDTVARLSVFA---TQGNAPN-IIIAGPPGVGKTTTIQCLARillgdSYKEAVLELNASNER 91
Cdd:PRK04195 2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIeswLKGKPKKaLLLYGPPGVGKTSLAHALAN-----DYGWEVIELNASDQR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 92 GIDVVRNKIKMFAQQKvTLPRGRHKIVILDEADSMTE----GAQQALRRTMEiyssttrfalacNTSEKII--------- 158
Cdd:PRK04195 77 TADVIERVAGEAATSG-SLFGARRKLILLDEVDGIHGnedrGGARAILELIK------------KAKQPIIltandpydp 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 17647857 159 --EPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNLQSTAQGFGDITAENV 231
Cdd:PRK04195 144 slRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDV 218
|
|
| 44 |
PHA02544 |
clamp loader, small subunit; Provisional |
18-220 |
3.03e-33 |
|
clamp loader, small subunit; Provisional
Pssm-ID: 222866 [Multi-domain] Cd Length: 316 Bit Score: 124.72 E-value: 3.03e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 18 WIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIII-AGPPGVGKTTtiqcLARILLGDSYKEaVLELNASNERgIDVV 96
Cdd:PHA02544 11 WEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLhSPSPGTGKTT----VAKALCNEVGAE-VLFVNGSDCR-IDFV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 97 RNKIKMFAQQkVTLpRGRHKIVILDEAD-SMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSD 175
Cdd:PHA02544 85 RNRLTRFAST-VSL-TGGGKVIIIDEFDrLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTK 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 17647857 176 A-------QVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNLQSTA 220
Cdd:PHA02544 163 EeqiemmkQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFRRTINELQRYA 214
|
|
| DnaX |
COG2812 |
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair]; |
24-325 |
1.25e-30 |
|
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];
Pssm-ID: 442061 [Multi-domain] Cd Length: 340 Bit Score: 118.37 E-value: 1.25e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 24 PVKFKEIVGNEDTVARLSVFATQGN-APNIIIAGPPGVGKTTTIQCLARILLGDSYKEA-------------------VL 83
Cdd:COG2812 6 PQTFDDVVGQEHVVRTLKNALASGRlAHAYLFTGPRGVGKTTLARILAKALNCENGPTGepcgecescraiaagshpdVI 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 84 EL--NASNeRGIDVVRNkikmfAQQKVTLP--RGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIE 159
Cdd:COG2812 86 EIdaEASN-IGVDDIRE-----LIEKVSYApvEGRYKVYIIDEAHMLTTEAFNALLKTLEEPPPHVVFILATTEPQKLLP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 160 PIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLnNLQSTAQGFGDITAEnvfkvcdeph 239
Cdd:COG2812 160 TILSRCQRFDFRRLPPEEIAEHLAKIAEREGIEIEPEALALIARAADGSMRDAL-SLLDQAIAFGLLDRR---------- 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 240 pKLLEEMIHHCAANDIHKAYKILAKLWKLGYSPE---DIIANIFR---VCK-------RINIDEHLKL------------ 294
Cdd:COG2812 229 -ELLLDLLEALLAGDVAALLALAEELAKRGRDLKrflDDLLSLLRdllLLKlgpdaelLVNEDERERLqelarrlsperl 307
|
330 340 350
....*....|....*....|....*....|..
gi 17647857 295 -DFIREIGITHMKIIDGINSLLQLTALLAKLC 325
Cdd:COG2812 308 lRAIQILLEARRELERNVNPRLALEMLLLRLA 339
|
|
| PRK14953 |
PRK14953 |
DNA polymerase III subunits gamma and tau; Provisional |
14-271 |
1.58e-28 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237867 [Multi-domain] Cd Length: 486 Bit Score: 114.92 E-value: 1.58e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 14 SHLPWIEKYRPVKFKEIVGNEdTVAR--LSVFATQGNAPNIIIAGPPGVGKTTTIQCLARIL------LGDSYKEA---- 81
Cdd:PRK14953 2 MYIPFARKYRPKFFKEVIGQE-IVVRilKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLnclnpqEGEPCGKCencv 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 82 ---------VLELNASNERGIDVVRNKIKMFAQQKVtlpRGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACN 152
Cdd:PRK14953 81 eidkgsfpdLIEIDAASNRGIDDIRALRDAVSYTPI---KGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTT 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 153 TSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNL-QSTAQGFGDIT---A 228
Cdd:PRK14953 158 EYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLdQASTYGEGKVTikvV 237
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 17647857 229 ENVFKVCDEPHPKlleEMIHHCAANDIHKAYKILAKLWKLGYS 271
Cdd:PRK14953 238 EEFLGIVSQESVR---KFLNLLLESDVDEAIKFLRTLEEKGYN 277
|
|
| Rep_fac_C |
pfam08542 |
Replication factor C C-terminal domain; This is the C-terminal domain of RFC (replication ... |
238-323 |
1.68e-28 |
|
Replication factor C C-terminal domain; This is the C-terminal domain of RFC (replication factor-C) protein of the clamp loader complex which binds to the DNA sliding clamp (proliferating cell nuclear antigen, PCNA). The five modules of RFC assemble into a right-handed spiral, which results in only three of the five RFC subunits (RFC-A, RFC-B and RFC-C) making contact with PCNA, leaving a wedge-shaped gap between RFC-E and the PCNA clamp-loader complex. The C-terminal is vital for the correct orientation of RFC-E with respect to RFC-A.
Pssm-ID: 462513 [Multi-domain] Cd Length: 87 Bit Score: 105.64 E-value: 1.68e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 238 PHPKLLEEMIHHCAANDIHKAYKILAK-LWKLGYSPEDIIANIFRVCKRINIDEHLKLDFIREIGITHMKIIDGINSLLQ 316
Cdd:pfam08542 1 PHPEDIEEILNSCLNGDFDEAYKKVRElLVEKGYSLQDIITQLHRVVKSLDLPEEVKLELLEKLGEIEYRLSEGASEKLQ 80
|
....*..
gi 17647857 317 LTALLAK 323
Cdd:pfam08542 81 LSALLAA 87
|
|
| PRK14962 |
PRK14962 |
DNA polymerase III subunits gamma and tau; Provisional |
21-276 |
7.33e-28 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237869 [Multi-domain] Cd Length: 472 Bit Score: 112.94 E-value: 7.33e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 21 KYRPVKFKEIVGnEDTVARLSVFATQGNAPN--IIIAGPPGVGKTTTIQCLARILLGDSYKEA----------------- 81
Cdd:PRK14962 7 KYRPKTFSEVVG-QDHVKKLIINALKKNSIShaYIFAGPRGTGKTTVARILAKSLNCENRKGVepcnecracrsidegtf 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 82 --VLELNASNERGIDVVRnKIKMFAQQKVTLprGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIE 159
Cdd:PRK14962 86 mdVIELDAASNRGIDEIR-KIRDAVGYRPME--GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPP 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 160 PIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNLQSTAQ-GFGDITAENVFKVCDEP 238
Cdd:PRK14962 163 TIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKfSEGKITLETVHEALGLI 242
|
250 260 270
....*....|....*....|....*....|....*...
gi 17647857 239 HPKLLEEMIHHCAANDIHKAYKILAKLWKLGYSPEDII 276
Cdd:PRK14962 243 PIEVVRDYINAIFNGDVKRVFTVLDDVYYSGKDYEVLI 280
|
|
| PRK14963 |
PRK14963 |
DNA polymerase III subunits gamma and tau; Provisional |
20-284 |
1.06e-23 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184927 [Multi-domain] Cd Length: 504 Bit Score: 101.07 E-value: 1.06e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 20 EKYRPVKFKEIVGNEDTVARLSVFATQGN-APNIIIAGPPGVGKTTTIQCLARIL--LGDSYKEA--------------- 81
Cdd:PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQGRlGHAYLFSGPRGVGKTTTARLIAMAVncSGEDPKPCgecesclavrrgahp 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 82 -VLELNASNERGIDVVRNkikmfAQQKVTLP--RGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKII 158
Cdd:PRK14963 86 dVLEIDAASNNSVEDVRD-----LREKVLLAplRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 159 EPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNLQSTAQGFGDITAENVFKVCDEP 238
Cdd:PRK14963 161 PTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLALGTPVTRKQVEEALGLP 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 17647857 239 HPKLLEEMIHHCAANDIHKAYKILAKLWKLGYSPEDIIANIFRVCK 284
Cdd:PRK14963 241 PQERLRGIAAALAQGDAAEALSGAAQLYRDGFAARTLVEGLLEAFR 286
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
31-165 |
8.65e-23 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 92.59 E-value: 8.65e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 31 VGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGDSYKeaVLELNASNERGIDVVRNKIKMFA--QQKV 108
Cdd:cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAP--FLYLNASDLLEGLVVAELFGHFLvrLLFE 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 17647857 109 TLPRGRHKIVILDEADSMTEGAQQALRRTMEIYSSTT------RFALACNTSE--KIIEPIQSRC 165
Cdd:cd00009 79 LAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRidrenvRVIGATNRPLlgDLDRALYDRL 143
|
|
| PRK14959 |
PRK14959 |
DNA polymerase III subunits gamma and tau; Provisional |
14-254 |
1.49e-21 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 95.52 E-value: 1.49e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 14 SHLPWIEKYRPVKFKEIVGNEDTVARLSVFATQGN-APNIIIAGPPGVGKTTTIQCLARIL------LGDSYKEA----- 81
Cdd:PRK14959 2 SHASLTARYRPQTFAEVAGQETVKAILSRAAQENRvAPAYLFSGTRGVGKTTIARIFAKALncetapTGEPCNTCeqcrk 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 82 --------VLELNASNERGIDVVRNKIKMFAQQKVtlpRGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNT 153
Cdd:PRK14959 82 vtqgmhvdVVEIDGASNRGIDDAKRLKEAIGYAPM---EGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 154 SEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNL-QSTAQGFGDITAENVF 232
Cdd:PRK14959 159 PHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLgQVLALGESRLTIDGAR 238
|
250 260
....*....|....*....|..
gi 17647857 233 KVCDEPHPKLLEEMIHHCAAND 254
Cdd:PRK14959 239 GVLGLAGQELFLRLMEALAAQD 260
|
|
| PRK14964 |
PRK14964 |
DNA polymerase III subunits gamma and tau; Provisional |
21-306 |
2.59e-21 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237870 [Multi-domain] Cd Length: 491 Bit Score: 94.08 E-value: 2.59e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 21 KYRPVKFKEIVGNEDTVARLSVFATQGNAPN-IIIAGPPGVGKTTTiqclARIL-----------------------LGD 76
Cdd:PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFTLNKIPQsILLVGASGVGKTTC----ARIIslclncsngptsdpcgtchncisIKN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 77 SYKEAVLELNASNERGIDvvrnKIKMFAQQKVTLP-RGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSE 155
Cdd:PRK14964 82 SNHPDVIEIDAASNTSVD----DIKVILENSCYLPiSSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVK 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 156 KIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNL-QSTAQGFGDITAENVFKV 234
Cdd:PRK14964 158 KIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLeQAAIYSNNKISEKSVRDL 237
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 17647857 235 CDEPHPKLLEEMIHHCAANDIHKAYKILAKLWKLgYSP----EDIIANIFRVCkRINIDEHLKLDFIREIgITHMK 306
Cdd:PRK14964 238 LGCVDKHILEDLVEAILLGDAQSALNVFRELCNT-SNPviilEGMLQIIYEIC-YFSITKEIDFLLGEDL-ITRIK 310
|
|
| PRK13342 |
PRK13342 |
recombination factor protein RarA; Reviewed |
20-231 |
7.19e-21 |
|
recombination factor protein RarA; Reviewed
Pssm-ID: 237355 [Multi-domain] Cd Length: 413 Bit Score: 92.46 E-value: 7.19e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 20 EKYRPVKFKEIVGNEDTVAR---LSVFATQGNAPNIIIAGPPGVGKTTtiqcLARIlLGDSYKEAVLELNASNErGIDVV 96
Cdd:PRK13342 4 ERMRPKTLDEVVGQEHLLGPgkpLRRMIEAGRLSSMILWGPPGTGKTT----LARI-IAGATDAPFEALSAVTS-GVKDL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 97 RnkiKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQAL-----RRTMEIYSSTTRfalacNTSEKIIEPIQSRCAMLRFT 171
Cdd:PRK13342 78 R---EVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALlphveDGTITLIGATTE-----NPSFEVNPALLSRAQVFELK 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 17647857 172 KLSDA---QVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNLQSTAQGFGDITAENV 231
Cdd:PRK13342 150 PLSEEdieQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELAALGVDSITLELL 212
|
|
| PRK14970 |
PRK14970 |
DNA polymerase III subunits gamma and tau; Provisional |
21-214 |
3.61e-20 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184934 [Multi-domain] Cd Length: 367 Bit Score: 89.93 E-value: 3.61e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 21 KYRPVKFKEIVGNED-TVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGDSYKEA-------VLELNASNERG 92
Cdd:PRK14970 10 KYRPQTFDDVVGQSHiTNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPnedfsfnIFELDAASNNS 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 93 IDVVRNKIKmfaQQKVTLPRGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTK 172
Cdd:PRK14970 90 VDDIRNLID---QVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKR 166
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 17647857 173 LSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLN 214
Cdd:PRK14970 167 ITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALS 208
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
21-213 |
6.10e-20 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 90.61 E-value: 6.10e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 21 KYRPVKFKEIVGNEDTVARL-SVFATQGNAPNIIIAGPPGVGKTT-------TIQCLARILLGD---------SYKEA-- 81
Cdd:PRK14971 10 KYRPSTFESVVGQEALTTTLkNAIATNKLAHAYLFCGPRGVGKTTcarifakTINCQNLTADGEacnecescvAFNEQrs 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 82 --VLELNASNERGIDVVRNKIKmfaQQKVTLPRGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIE 159
Cdd:PRK14971 90 ynIHELDAASNNSVDDIRNLIE---QVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILP 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 17647857 160 PIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGL 213
Cdd:PRK14971 167 TILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDAL 220
|
|
| PRK07133 |
PRK07133 |
DNA polymerase III subunits gamma and tau; Validated |
15-284 |
1.56e-19 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235943 [Multi-domain] Cd Length: 725 Bit Score: 89.49 E-value: 1.56e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 15 HLPWIEKYRPVKFKEIVGNEDTVARL-SVFATQGNAPNIIIAGPPGVGKT-------TTIQCLARILLGDSYKEAV---- 82
Cdd:PRK07133 5 YKALYRKYRPKTFDDIVGQDHIVQTLkNIIKSNKISHAYLFSGPRGTGKTsvakifaNALNCSHKTDLLEPCQECIenvn 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 83 -----LELNASNERGIDVVR---NKIKMFAQQkvtlprGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTS 154
Cdd:PRK07133 85 nsldiIEMDAASNNGVDEIReliENVKNLPTQ------SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 155 EKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNL-QSTAQGFGDITAENVFK 233
Cdd:PRK07133 159 HKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAeQVSIFGNNKITLKNVEE 238
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 17647857 234 VCDEPHPKLLEEMIHHCAANDIHKAYKILAKLWKLGYSPEDIIANIFRVCK 284
Cdd:PRK07133 239 LFGLVSNENLINLLNLLYSKDIKEVLNILNQIKEQGIDPELLLISLINLVK 289
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
21-254 |
2.31e-19 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 89.00 E-value: 2.31e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 21 KYRPVKFKEIVGNEDTVARLSVFATQGNAPNI-IIAGPPGVGKTTTIQCLARILLGDSYKEA------------------ 81
Cdd:PRK08691 9 KWRPKTFADLVGQEHVVKALQNALDEGRLHHAyLLTGTRGVGKTTIARILAKSLNCENAQHGepcgvcqsctqidagryv 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 82 -VLELNASNERGIDVVRNKIKMfAQQKVTLprGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEP 160
Cdd:PRK08691 89 dLLEIDAASNTGIDNIREVLEN-AQYAPTA--GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVT 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 161 IQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNL-QSTAQGFGDITAENVFKVCDEPH 239
Cdd:PRK08691 166 VLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLdQAIALGSGKVAENDVRQMIGAVD 245
|
250
....*....|....*
gi 17647857 240 PKLLEEMIHHCAAND 254
Cdd:PRK08691 246 KQYLYELLTGIINQD 260
|
|
| HLD_clamp_RFC |
cd18140 |
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein ... |
173-235 |
5.08e-19 |
|
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein clamp loader complex that forms a stable ATP-dependent complex with the sliding clamp, PCNA, which binds specifically to primed DNA. RFC subunits belong to the clamp loader clade of the AAA+ superfamily.
Pssm-ID: 350842 [Multi-domain] Cd Length: 63 Bit Score: 79.50 E-value: 5.08e-19
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 17647857 173 LSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNLQSTAQGFGDITAENVFKVC 235
Cdd:cd18140 1 LSKEQIVKRLREICKKEGVKIDEEALEAIAEKSEGDMRKAINDLQAAAAGGGVITEEDVYEVA 63
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
21-231 |
1.61e-18 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 86.40 E-value: 1.61e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 21 KYRPVKFKEIVGNEDTVARLSVFATQGN-APNIIIAGPPGVGKTTTIQCLAR----------------------ILLGDS 77
Cdd:PRK14950 9 KWRSQTFAELVGQEHVVQTLRNAIAEGRvAHAYLFTGPRGVGKTSTARILAKavncttndpkgrpcgtcemcraIAEGSA 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 78 YKeaVLELNASNERGIDVVRnKIKMFAQQKVTLprGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKI 157
Cdd:PRK14950 89 VD--VIEMDAASHTSVDDAR-EIIERVQFRPAL--ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKV 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 17647857 158 IEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNLQSTAQ-GFGDITAENV 231
Cdd:PRK14950 164 PATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATtYGGEISLSQV 238
|
|
| PRK06645 |
PRK06645 |
DNA polymerase III subunits gamma and tau; Validated |
15-279 |
2.32e-18 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180643 [Multi-domain] Cd Length: 507 Bit Score: 85.68 E-value: 2.32e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 15 HLPWIEKYRPVKFKEIVGNEDTVARLSVFATQGN-APNIIIAGPPGVGKTT-------TIQCLARILLGDSYKEA----- 81
Cdd:PRK06645 8 YIPFARKYRPSNFAELQGQEVLVKVLSYTILNDRlAGGYLLTGIRGVGKTTsariiakAVNCSALITENTTIKTCeqctn 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 82 -----------VLELNASNERGIDVVRNKIKMfAQQKVTlpRGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALA 150
Cdd:PRK06645 88 cisfnnhnhpdIIEIDAASKTSVDDIRRIIES-AEYKPL--QGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFA 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 151 CNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQG---LNNLQSTAQGFGDIT 227
Cdd:PRK06645 165 TTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAvsiLDQAASMSAKSDNII 244
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 17647857 228 AENVF-KVCDEPHPKLLEEMIHHCAANDIHKAYKILAKLWKLGYSPEDIIANI 279
Cdd:PRK06645 245 SPQVInQMLGLVDSSVIIEFVEYIIHRETEKAINLINKLYGSSVNLEIFIESV 297
|
|
| PRK05896 |
PRK05896 |
DNA polymerase III subunits gamma and tau; Validated |
14-327 |
9.26e-18 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235638 [Multi-domain] Cd Length: 605 Bit Score: 84.13 E-value: 9.26e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 14 SHLPWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPN-IIIAGPPGVGKTTTIQCLARIL------LGDSYKEA----- 81
Cdd:PRK05896 2 SEITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHaYIFSGPRGIGKTSIAKIFAKAInclnpkDGDCCNSCsvces 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 82 --------VLELNASNERGIDVVRNKIKMFAQQKVTLprgRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNT 153
Cdd:PRK05896 82 intnqsvdIVELDAASNNGVDEIRNIIDNINYLPTTF---KYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 154 SEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNL-QSTAQGFGDITAENVF 232
Cdd:PRK05896 159 FQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILdQLSTFKNSEIDIEDIN 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 233 KVCDEPHPKLLEEMIHHCAANDIHKAYKILAKLWKLGYSPEDIIANIFRV---------CKRINIDEHLKLDFIREIGIT 303
Cdd:PRK05896 239 KTFGLVDNNKKINLIELIQKNDIEELRNLINELESKGINFEAFCRDLINLlidllvyqkTKNINLLKKLSKEQLKTLNLE 318
|
330 340 350
....*....|....*....|....*....|.
gi 17647857 304 HMKIID-------GINSLLQLTALLAKLCIA 327
Cdd:PRK05896 319 KQKLLSiefntnfLLNNFVSLINRLKASVNQ 349
|
|
| PRK06305 |
PRK06305 |
DNA polymerase III subunits gamma and tau; Validated |
21-210 |
1.97e-17 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180523 [Multi-domain] Cd Length: 451 Bit Score: 82.51 E-value: 1.97e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 21 KYRPVKFKEIVGNEDTVARL-SVFATQGNAPNIIIAGPPGVGKTTTIQCLAR----------------------ILLGDS 77
Cdd:PRK06305 10 KYRPQTFSEILGQDAVVAVLkNALRFNRAAHAYLFSGIRGTGKTTLARIFAKalncqnptedqepcnqcasckeISSGTS 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 78 YKeaVLELNASNERGIDVVR--NKIKMFAQQKvtlprGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSE 155
Cdd:PRK06305 90 LD--VLEIDGASHRGIEDIRqiNETVLFTPSK-----SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIH 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 17647857 156 KIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMR 210
Cdd:PRK06305 163 KIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLR 217
|
|
| PRK14965 |
PRK14965 |
DNA polymerase III subunits gamma and tau; Provisional |
14-216 |
6.82e-17 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 81.33 E-value: 6.82e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 14 SHLPWIEKYRPVKFKEIVGNEDTVARLSVFATQGN-APNIIIAGPPGVGKTTTIQCLARIL------------------- 73
Cdd:PRK14965 2 SYLVLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRvAHAFLFTGARGVGKTSTARILAKALnceqgltaepcnvcppcve 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 74 LGDSYKEAVLELNASNERGIDVVR---NKIKMfaqqkvtLP-RGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFAL 149
Cdd:PRK14965 82 ITEGRSVDVFEIDGASNTGVDDIRelrENVKY-------LPsRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIF 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 17647857 150 ACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNL 216
Cdd:PRK14965 155 ATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTL 221
|
|
| PRK06647 |
PRK06647 |
DNA polymerase III subunits gamma and tau; Validated |
21-313 |
1.01e-15 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235845 [Multi-domain] Cd Length: 563 Bit Score: 77.89 E-value: 1.01e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 21 KYRPVKFKEIVGNEDTVARLSVFATQGN-APNIIIAGPPGVGKTTTIQCLARIL----------LGD--SYKEA------ 81
Cdd:PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIESNKiANAYIFSGPRGVGKTSSARAFARCLncvngptpmpCGEcsSCKSIdndnsl 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 82 -VLELNASNERGIDVVRnKIK---MFAQQKvtlprGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKI 157
Cdd:PRK06647 89 dVIEIDGASNTSVQDVR-QIKeeiMFPPAS-----SRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 158 IEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNL-QSTAQGFGDITAENVFK--- 233
Cdd:PRK06647 163 PATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFdQVVSFSDSDITLEQIRSkmg 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 234 -VCDEphpkLLEEMIHHCAANDIHKAYKILAKLWKLGYSPEDIIanifrvckrinIDehlKLDFIREI-----GITHMKI 307
Cdd:PRK06647 243 lTGDE----FLEKLASSILNEDAKELLCVLDSVFLSGVSVEQFL-----------LD---CIEFFRELlflkhGIKNEAF 304
|
....*.
gi 17647857 308 IdGINS 313
Cdd:PRK06647 305 I-GIKA 309
|
|
| PRK08451 |
PRK08451 |
DNA polymerase III subunits gamma and tau; Validated |
21-276 |
1.59e-15 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236267 [Multi-domain] Cd Length: 535 Bit Score: 77.00 E-value: 1.59e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 21 KYRPVKFKEIVGNEDTVARLSVFATQGNAPNI-IIAGPPGVGKTTTIQCLARILLGDSYKEAV----------------- 82
Cdd:PRK08451 7 KYRPKHFDELIGQESVSKTLSLALDNNRLAHAyLFSGLRGSGKTSSARIFARALVCEQGPSSTpcdtciqcqsalenrhi 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 83 --LELNASNERGIDVVRNKIKmfaQQKVTLPRGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEP 160
Cdd:PRK08451 87 diIEMDAASNRGIDDIRELIE---QTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPAT 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 161 IQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNL-QSTAQGFGDITAENVFKVCDEPH 239
Cdd:PRK08451 164 ILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLdQAIIYCKNAITESKVADMLGLLD 243
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 17647857 240 PKLLEEMIHHCAAND---IHKAYKILAklwklGYSPEDII 276
Cdd:PRK08451 244 PSKLEDFFQAILNQDkekLFELLKELE-----DYEAEMVL 278
|
|
| PRK14956 |
PRK14956 |
DNA polymerase III subunits gamma and tau; Provisional |
21-214 |
1.64e-15 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184920 [Multi-domain] Cd Length: 484 Bit Score: 76.91 E-value: 1.64e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 21 KYRPVKFKEIVGNEDTVARL-SVFATQGNAPNIIIAGPPGVGKTTTIQCLAR---------------------ILLGDSy 78
Cdd:PRK14956 11 KYRPQFFRDVIHQDLAIGALqNALKSGKIGHAYIFFGPRGVGKTTIARILAKrlncenpignepcnectscleITKGIS- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 79 kEAVLELNASNERGIDVVRnkiKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKII 158
Cdd:PRK14956 90 -SDVLEIDAASNRGIENIR---ELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIP 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 17647857 159 EPIQSRCAMLRFTKLSdAQVLAKLIE-VAKWEKLNYTEDGLEAIVFTAQGDMRQGLN 214
Cdd:PRK14956 166 ETILSRCQDFIFKKVP-LSVLQDYSEkLCKIENVQYDQEGLFWIAKKGDGSVRDMLS 221
|
|
| PRK14958 |
PRK14958 |
DNA polymerase III subunits gamma and tau; Provisional |
14-288 |
6.18e-15 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184922 [Multi-domain] Cd Length: 509 Bit Score: 75.15 E-value: 6.18e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 14 SHLPWIEKYRPVKFKEIVGNEDTVARLS-VFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGDSYKEAVLELNASNERG 92
Cdd:PRK14958 2 AHQVLARKWRPRCFQEVIGQAPVVRALSnALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCRE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 93 ID------------VVRNKIKMFAQQKVTLP----RGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEK 156
Cdd:PRK14958 82 IDegrfpdlfevdaASRTKVEDTRELLDNIPyaptKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHK 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 157 IIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNL-QSTAQGFGDITAENVFKVC 235
Cdd:PRK14958 162 LPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLdQSIAYGNGKVLIADVKTML 241
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 17647857 236 DEPHPKLLEEMIHHCAANDIHKAYKILAKLWKLGYSPEDIIANIFRVCKRINI 288
Cdd:PRK14958 242 GTIEPLLLFDILEALAAKAGDRLLGCVTRLVEQGVDFSNALADLLSLLHQIAI 294
|
|
| PRK14957 |
PRK14957 |
DNA polymerase III subunits gamma and tau; Provisional |
21-330 |
5.04e-14 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184921 [Multi-domain] Cd Length: 546 Bit Score: 72.81 E-value: 5.04e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 21 KYRPVKFKEIVGNEDTVARL-SVFATQGNAPNIIIAGPPGVGKTTTIQCLARIL-------------------LGDSYKE 80
Cdd:PRK14957 9 KYRPQSFAEVAGQQHALNSLvHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLncktgvtaepcnkcencvaINNNSFI 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 81 AVLELNASNERGIDVVRnkiKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEP 160
Cdd:PRK14957 89 DLIEIDAASRTGVEETK---EILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVT 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 161 IQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNLQST-------------AQGFGDIT 227
Cdd:PRK14957 166 ILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAisfcggelkqaqiKQMLGIID 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 228 AENVFKVCD---EPHPKLLEEMIHHCAANDiHKAYKILaklwklgyspeDIIANIFRVCKRINIDEhlKLDFIREIGITH 304
Cdd:PRK14957 246 SEEVYSIINaiiDNDPKAILPAIKNLALTE-SSADAVL-----------DRIAEIWFACCIYSFTQ--SLDAVNDIDVDI 311
|
330 340
....*....|....*....|....*..
gi 17647857 305 M-KIIDGINslLQLTALLAKLCIAAEK 330
Cdd:PRK14957 312 InNILAKIS--IEQAHFLYQLTITAKK 336
|
|
| PRK14961 |
PRK14961 |
DNA polymerase III subunits gamma and tau; Provisional |
21-288 |
9.67e-14 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184925 [Multi-domain] Cd Length: 363 Bit Score: 70.99 E-value: 9.67e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 21 KYRPVKFKEIVGNEDTVARLSVFATQGNAPNI-IIAGPPGVGKTTTIQCLARIL---LGDSYKEA--------------- 81
Cdd:PRK14961 9 KWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAwLLSGTRGVGKTTIARLLAKSLncqNGITSNPCrkciickeiekglcl 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 82 -VLELNASNERGIDVVRnkiKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEP 160
Cdd:PRK14961 89 dLIEIDAASRTKVEEMR---EILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKT 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 161 IQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNL-QSTAQGFGDITAENVFKVCDEPH 239
Cdd:PRK14961 166 ILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLeHAINLGKGNINIKNVTDMLGLLN 245
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 17647857 240 PKLLEEMIHHCAANDIHKAYKILAKLWKLGYSPEDIIANIFRVCKRINI 288
Cdd:PRK14961 246 EKQSFLLTDALLKKDSKKTMLLLNKISSIGIEWENILIEMLRFLHHISM 294
|
|
| PRK14960 |
PRK14960 |
DNA polymerase III subunit gamma/tau; |
21-231 |
8.83e-13 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237868 [Multi-domain] Cd Length: 702 Bit Score: 68.92 E-value: 8.83e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 21 KYRPVKFKEIVGNEDTVARLSVFATQGNAPNI-IIAGPPGVGKTTTIQCLARIL-----LGDSYKEAVLELNASNE-RGI 93
Cdd:PRK14960 8 KYRPRNFNELVGQNHVSRALSSALERGRLHHAyLFTGTRGVGKTTIARILAKCLncetgVTSTPCEVCATCKAVNEgRFI 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 94 DVV------RNKIKMFAQQKVTLP----RGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQS 163
Cdd:PRK14960 88 DLIeidaasRTKVEDTRELLDNVPyaptQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVIS 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 17647857 164 RCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLN-NLQSTAQGFGDITAENV 231
Cdd:PRK14960 168 RCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSlTDQAIAYGQGAVHHQDV 236
|
|
| RarA |
COG2256 |
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, ... |
23-231 |
1.15e-12 |
|
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, recombination and repair];
Pssm-ID: 441857 [Multi-domain] Cd Length: 439 Bit Score: 68.16 E-value: 1.15e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 23 RPVKFKEIVGNEDTVAR---LSVFATQGNAPNIIIAGPPGVGKTTtiqcLARILLGDSyKEAVLELNASNErGIDVVRnk 99
Cdd:COG2256 20 RPRTLDEVVGQEHLLGPgkpLRRAIEAGRLSSMILWGPPGTGKTT----LARLIANAT-DAEFVALSAVTS-GVKDIR-- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 100 iKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQAL-----RRTMEIYSSTTRfalacNTSEKIIEPIQSRCAMLRFTKLS 174
Cdd:COG2256 92 -EVIEEARERRAYGRRTILFVDEIHRFNKAQQDALlphveDGTITLIGATTE-----NPSFEVNSALLSRCRVFVLKPLS 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 175 DAQvLAKLIEVA--------KWEKLNYTEDGLEAIVFTAQGDMRQGLNNLQ-----STAQGFGDITAENV 231
Cdd:COG2256 166 EED-LEQLLERAladderglGGYKLELDDEALEALARLADGDARRALNALElavlsAPPDGVIEITLELV 234
|
|
| PRK14969 |
PRK14969 |
DNA polymerase III subunits gamma and tau; Provisional |
21-231 |
1.98e-12 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237873 [Multi-domain] Cd Length: 527 Bit Score: 67.85 E-value: 1.98e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 21 KYRPVKFKEIVGNEDTVARLSVFATQGNAPNI-IIAGPPGVGKTTtiqcLARILLGDSYKEA------------------ 81
Cdd:PRK14969 9 KWRPKSFSELVGQEHVVRALTNALEQQRLHHAyLFTGTRGVGKTT----LARILAKSLNCETgvtatpcgvcsacleids 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 82 -----VLELNASNERGIDVVRNKIKMfAQQKVTlpRGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEK 156
Cdd:PRK14969 85 grfvdLIEVDAASNTQVDAMRELLDN-AQYAPT--RGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQK 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 17647857 157 IIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNL-QSTAQGFGDITAENV 231
Cdd:PRK14969 162 IPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLdQAIAYGGGTVNESEV 237
|
|
| PRK07399 |
PRK07399 |
DNA polymerase III subunit delta'; Validated |
25-207 |
9.14e-12 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236011 [Multi-domain] Cd Length: 314 Bit Score: 64.92 E-value: 9.14e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 25 VKFKEIVGNEDTVARL-SVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGDSYKEAVLE--LNASN------------ 89
Cdd:PRK07399 1 NLFANLIGQPLAIELLtAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRrrLEEGNhpdllwveptyq 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 90 ------------ERG----------IDVVRNkIKMF-AQQKVTLPRgrhKIVILDEADSMTEGAQQALRRTMEIYSSTTr 146
Cdd:PRK07399 81 hqgklitaseaeEAGlkrkappqirLEQIRE-IKRFlSRPPLEAPR---KVVVIEDAETMNEAAANALLKTLEEPGNGT- 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 17647857 147 FALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTedgLEAIVFTAQG 207
Cdd:PRK07399 156 LILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILNIN---FPELLALAQG 213
|
|
| PRK09111 |
PRK09111 |
DNA polymerase III subunits gamma and tau; Validated |
21-231 |
9.69e-12 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236382 [Multi-domain] Cd Length: 598 Bit Score: 65.69 E-value: 9.69e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 21 KYRPVKFKEIVGNEDTVARLS-VFATQGNAPNIIIAGPPGVGKTTTIQCLARILlgdSYKEA------------------ 81
Cdd:PRK09111 17 KYRPQTFDDLIGQEAMVRTLTnAFETGRIAQAFMLTGVRGVGKTTTARILARAL---NYEGPdgdggptidlcgvgehcq 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 82 ---------VLELNASNERGIDVVRNKIKMFAQQKVTlprGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALAcn 152
Cdd:PRK09111 94 aimegrhvdVLEMDAASHTGVDDIREIIESVRYRPVS---ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFA-- 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 153 TSE--KIIEPIQSRCAmlRFT-KLSDAQVLAKLIE-VAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNL-QSTAQGFGDIT 227
Cdd:PRK09111 169 TTEirKVPVTVLSRCQ--RFDlRRIEADVLAAHLSrIAAKEGVEVEDEALALIARAAEGSVRDGLSLLdQAIAHGAGEVT 246
|
....
gi 17647857 228 AENV 231
Cdd:PRK09111 247 AEAV 250
|
|
| PRK05563 |
PRK05563 |
DNA polymerase III subunits gamma and tau; Validated |
21-276 |
9.71e-12 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235505 [Multi-domain] Cd Length: 559 Bit Score: 65.66 E-value: 9.71e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 21 KYRPVKFKEIVGNEdTVARlsvfaTQGNApniII----------AGPPGVGKTTTIQCLAR------------------- 71
Cdd:PRK05563 9 KWRPQTFEDVVGQE-HITK-----TLKNA---IKqgkishaylfSGPRGTGKTSAAKIFAKavnclnppdgepcneceic 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 72 --ILLGDSykEAVLELN-ASNeRGIDVVRNKIkmfaqQKVTLP--RGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTR 146
Cdd:PRK05563 80 kaITNGSL--MDVIEIDaASN-NGVDEIRDIR-----DKVKYApsEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVI 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 147 FALAcnTSE--KIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNL-QSTAQGF 223
Cdd:PRK05563 152 FILA--TTEphKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILdQAISFGD 229
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 17647857 224 GDITAENVFKVCDEPHPKLLEEMIHHCAANDIHKAYKILAKLWKLGYSP----EDII 276
Cdd:PRK05563 230 GKVTYEDALEVTGSVSQEALDDLVDAIVEGDVAKALKILEELLDEGKDPnrfiEDLI 286
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
21-231 |
2.47e-11 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 64.51 E-value: 2.47e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 21 KYRPVKFKEIVGNEDTVARLSVFATQGNAPNI-IIAGPPGVGKTTtiqcLARIL------LGDSYKEAV----------- 82
Cdd:PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALEQQRLHHAyLFTGTRGVGKTT----LSRILakslncTGADGEGGItaqpcgqcrac 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 83 -----------LELNASNERGIDvvrnKIKMFAQQKVTLP-RGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALA 150
Cdd:PRK12323 85 teidagrfvdyIEMDAASNRGVD----EMAQLLDKAVYAPtAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 151 CNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLN-NLQSTAQGFGDITAE 229
Cdd:PRK12323 161 TTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSlTDQAIAYSAGNVSEE 240
|
..
gi 17647857 230 NV 231
Cdd:PRK12323 241 AV 242
|
|
| PRK14952 |
PRK14952 |
DNA polymerase III subunits gamma/tau; |
21-272 |
3.00e-11 |
|
DNA polymerase III subunits gamma/tau;
Pssm-ID: 237866 [Multi-domain] Cd Length: 584 Bit Score: 64.13 E-value: 3.00e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 21 KYRPVKFKEIVGNEDTVARLSVfATQGNAPN--IIIAGPPGVGKTTTIQCLARIL-------------------LGDSYK 79
Cdd:PRK14952 6 KYRPATFAEVVGQEHVTEPLSS-ALDAGRINhaYLFSGPRGCGKTSSARILARSLncaqgptatpcgvcescvaLAPNGP 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 80 EA--VLELNASNERGIDVVRNkikmFAQQKVTLP-RGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEK 156
Cdd:PRK14952 85 GSidVVELDAASHGGVDDTRE----LRDRAFYAPaQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 157 IIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNyTEDGLEAIVFTAQG----DMRQGLNNLQSTAQGfGDITAENVF 232
Cdd:PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV-VDDAVYPLVIRAGGgsprDTLSVLDQLLAGAAD-THVTYQRAL 238
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 17647857 233 KVCDEPHPKLLEEMIHHCAANDIHKAYKILAKLWKLGYSP 272
Cdd:PRK14952 239 GLLGATDVALIDDAVDALAADDAAALFGAIESVIDAGHDP 278
|
|
| PRK13341 |
PRK13341 |
AAA family ATPase; |
13-217 |
8.02e-11 |
|
AAA family ATPase;
Pssm-ID: 237354 [Multi-domain] Cd Length: 725 Bit Score: 63.15 E-value: 8.02e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 13 RSHLPWIEKYRPVKFKEIVGNEDTVA--RLSVFATQ-GNAPNIIIAGPPGVGKTTtiqcLARILLGD-----SYKEAVLE 84
Cdd:PRK13341 13 QSEAPLADRLRPRTLEEFVGQDHILGegRLLRRAIKaDRVGSLILYGPPGVGKTT----LARIIANHtrahfSSLNAVLA 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 85 lnasnerGIDVVRNKIKMfAQQKvtlpRGRH---KIVILDEADSMTEGAQQAL-----RRTMEIYSSTTRfalacNTSEK 156
Cdd:PRK13341 89 -------GVKDLRAEVDR-AKER----LERHgkrTILFIDEVHRFNKAQQDALlpwveNGTITLIGATTE-----NPYFE 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 157 IIEPIQSRCAMLRFTKLSDAQvLAKLIEVA---------KWeKLNYTEDGLEAIVFTAQGDMRQGLNNLQ 217
Cdd:PRK13341 152 VNKALVSRSRLFRLKSLSDED-LHQLLKRAlqdkergygDR-KVDLEPEAEKHLVDVANGDARSLLNALE 219
|
|
| PRK05564 |
PRK05564 |
DNA polymerase III subunit delta'; Validated |
26-174 |
9.60e-11 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180132 [Multi-domain] Cd Length: 313 Bit Score: 61.97 E-value: 9.60e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 26 KFKEIVGNEDTVARLSVFATQGNAPN-IIIAGPPGVGKTTTIQCLARILLG-DSYKEAV--LELNASNER--GIDVVRNK 99
Cdd:PRK05564 2 SFHTIIGHENIKNRIKNSIIKNRFSHaHIIVGEDGIGKSLLAKEIALKILGkSQQREYVdiIEFKPINKKsiGVDDIRNI 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 17647857 100 IKMFAQQKVtlpRGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLS 174
Cdd:PRK05564 82 IEEVNKKPY---EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLS 153
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
17-65 |
1.11e-10 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 62.55 E-value: 1.11e-10
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 17647857 17 PWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTT 65
Cdd:PRK04132 8 PWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 56
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
52-170 |
1.58e-10 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 57.99 E-value: 1.58e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 52 IIIAGPPGVGKTTtiqcLARILLGDSYKEaVLELNAS---NERGIDVVRNKIKMFAQQKVTLPrgrhKIVILDEADSM-- 126
Cdd:pfam00004 1 LLLYGPPGTGKTT----LAKAVAKELGAP-FIEISGSelvSKYVGESEKRLRELFEAAKKLAP----CVIFIDEIDALag 71
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 17647857 127 ---------TEGAQQALRRTME---IYSSTTRFALACNTSEKIIEPIQSRCAMLRF 170
Cdd:pfam00004 72 srgsggdseSRRVVNQLLTELDgftSSNSKVIVIAATNRPDKLDPALLGRFDRIIE 127
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
21-210 |
3.00e-10 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 61.11 E-value: 3.00e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 21 KYRPVKFKEIVGNEdtvarlSVFATQGNAPNI-------IIAGPPGVGKTTTIQCLA------RILLGDSYKEAVLE--- 84
Cdd:PRK14954 9 KYRPSKFADITAQE------HITHTIQNSLRMdrvghgyIFSGLRGVGKTTAARVFAkavncqRMIDDPVYLQEVTEpcg 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 85 -------------LN------ASNERGIDV--VRNKIKmFAQQKvtlprGRHKIVILDEADSMTEGAQQALRRTMEIYSS 143
Cdd:PRK14954 83 ecescrdfdagtsLNisefdaASNNSVDDIrqLRENVR-YGPQK-----GRYRVYIIDEVHMLSTAAFNAFLKTLEEPPP 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 17647857 144 TTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMR 210
Cdd:PRK14954 157 HAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMR 223
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
51-154 |
5.21e-10 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 57.00 E-value: 5.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 51 NIIIAGPPGVGKTTTIQCLARILLGDSYKeaVLELNASNERGIDVVRNKIKMFAQQKVTLPRG-------------RHKI 117
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGG--VIYIDGEDILEEVLDQLLLIIVGGKKASGSGElrlrlalalarklKPDV 81
|
90 100 110
....*....|....*....|....*....|....*..
gi 17647857 118 VILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTS 154
Cdd:smart00382 82 LILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLT 118
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
14-231 |
1.16e-09 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 59.34 E-value: 1.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 14 SHLPWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNI-IIAGPPGVGKTTTIQCLARIL-------LG---------- 75
Cdd:PRK14951 2 SYLVLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAyLFTGTRGVGKTTVSRILAKSLncqgpdgQGgitatpcgvc 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 76 ------DS-----YkeavLELNASNERGIDvvrnKIKMFAQQKVTLP-RGRHKIVILDEADSMTEGAQQALRRTMEIYSS 143
Cdd:PRK14951 82 qacrdiDSgrfvdY----TELDAASNRGVD----EVQQLLEQAVYKPvQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 144 TTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLN-NLQSTAQG 222
Cdd:PRK14951 154 YLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSlTDQAIAFG 233
|
....*....
gi 17647857 223 FGDITAENV 231
Cdd:PRK14951 234 SGQLQEAAV 242
|
|
| PRK09112 |
PRK09112 |
DNA polymerase III subunit delta'; Validated |
93-213 |
1.94e-09 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 169667 [Multi-domain] Cd Length: 351 Bit Score: 58.12 E-value: 1.94e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 93 IDVVRNKIKMFAQqkvTLPRGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTK 172
Cdd:PRK09112 123 VDEIRRVGHFLSQ---TSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKP 199
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 17647857 173 LSDAQVLAKLIEVAKweKLNYTEDGLEAIVFTAQGDMRQGL 213
Cdd:PRK09112 200 LDDDELKKALSHLGS--SQGSDGEITEALLQRSKGSVRKAL 238
|
|
| PRK14955 |
PRK14955 |
DNA polymerase III subunits gamma and tau; Provisional |
21-210 |
4.40e-09 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184919 [Multi-domain] Cd Length: 397 Bit Score: 57.21 E-value: 4.40e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 21 KYRPVKFKEIVGNEDTVARLSVFATQGNAPN-IIIAGPPGVGKTTTIQCLARIL-----LGDS-YKEAVLE--------- 84
Cdd:PRK14955 9 KYRPKKFADITAQEHITRTIQNSLRMGRVGHgYIFSGLRGVGKTTAARVFAKAVncqrmIDDAdYLQEVTEpcgecescr 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 85 -------LN------ASNERGIDV--VRNKIKmFAQQKvtlprGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFAL 149
Cdd:PRK14955 89 dfdagtsLNisefdaASNNSVDDIrlLRENVR-YGPQK-----GRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIF 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 17647857 150 ACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMR 210
Cdd:PRK14955 163 ATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMR 223
|
|
| PRK14948 |
PRK14948 |
DNA polymerase III subunit gamma/tau; |
14-231 |
1.36e-08 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 56.12 E-value: 1.36e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 14 SHLPWIEKYRPVKFKEIVGNEDTVARLS-VFATQGNAPNIIIAGPPGVGKTTTIQCLARIL------------------- 73
Cdd:PRK14948 2 AYEPLHHKYRPQRFDELVGQEAIATTLKnALISNRIAPAYLFTGPRGTGKTSSARILAKSLnclnsdkptpepcgkcelc 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 74 --LGDSYKEAVLELNASNERGIDVVRNKIK--MFAqqkvtlP-RGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFA 148
Cdd:PRK14948 82 raIAAGNALDVIEIDAASNTGVDNIRELIEraQFA------PvQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFV 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 149 LACNTSEKIIEPIQSRCAMLRFTKLS-DAQVlAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMR-------QgLNNLQsta 220
Cdd:PRK14948 156 LATTDPQRVLPTIISRCQRFDFRRIPlEAMV-QHLSEIAEKESIEIEPEALTLVAQRSQGGLRdaeslldQ-LSLLP--- 230
|
250
....*....|.
gi 17647857 221 qgfGDITAENV 231
Cdd:PRK14948 231 ---GPITPEAV 238
|
|
| DNA_pol3_delta2 |
pfam13177 |
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required ... |
32-174 |
4.44e-08 |
|
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA.
Pssm-ID: 433013 [Multi-domain] Cd Length: 161 Bit Score: 51.83 E-value: 4.44e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 32 GNEDTVARL-SVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLGDSYKEA-----------VLELNASNERGIDVVRNK 99
Cdd:pfam13177 1 GQPEAIQLLqNSLENGRLSHAYLFSGPEGVGKLELALAFAKALFCEEPGDDlpcgqcrscrrIESGNHPDLVIIEPEGQS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 100 IKM----FAQQKVTLP--RGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKL 173
Cdd:pfam13177 81 IKIdqirELQKEFSKSpyEGKKKVYIIEDAEKMTASAANSLLKFLEEPPGNTVIILLTENPSRLLPTIRSRCQIIRFKPL 160
|
.
gi 17647857 174 S 174
Cdd:pfam13177 161 S 161
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
21-213 |
3.23e-07 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 51.77 E-value: 3.23e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 21 KYRPVKFKEIVGNEDTVARLSvFATQGNAPN--IIIAGPPGVGKTTtiqcLARIllgdsYKEAV---------------- 82
Cdd:PRK07003 9 KWRPKDFASLVGQEHVVRALT-HALDGGRLHhaYLFTGTRGVGKTT----LSRI-----FAKALncetgvtsqpcgvcra 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 83 ------------LELNASNERGIDvvrnkiKMFA--QQKVTLP-RGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRF 147
Cdd:PRK07003 79 creidegrfvdyVEMDAASNRGVD------EMAAllERAVYAPvDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKF 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 17647857 148 ALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGL 213
Cdd:PRK07003 153 ILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDAL 218
|
|
| PRK06871 |
PRK06871 |
DNA polymerase III subunit delta'; Validated |
92-165 |
8.86e-07 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180738 [Multi-domain] Cd Length: 325 Bit Score: 49.73 E-value: 8.86e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 17647857 92 GIDVVRN---KIKMFAQQkvtlprGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRC 165
Cdd:PRK06871 88 GVDQVREineKVSQHAQQ------GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRC 158
|
|
| rad24 |
TIGR00602 |
checkpoint protein rad24; All proteins in this family for which functions are known are ... |
17-149 |
3.21e-06 |
|
checkpoint protein rad24; All proteins in this family for which functions are known are involved in DNA damage tolerance (likely cell cycle checkpoints).This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129690 [Multi-domain] Cd Length: 637 Bit Score: 48.80 E-value: 3.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 17 PWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPN-----IIIAGPPGVGKTTTIQCLARIlLGDSYKEAV----LELNA 87
Cdd:TIGR00602 73 PWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENapkriLLITGPSGCGKSTTIKILSKE-LGIQVQEWSnptlPDFQK 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 88 SNERGIDVVRNKIKMFAQQKVTLP-----------------RGRHKIVILDEADSMTEGAQQALRRTME-IYSSTTRFAL 149
Cdd:TIGR00602 152 NDHKVTLSLESCFSNFQSQIEVFSefllratnklqmlgddlMTDKKIILVEDLPNQFYRDTRALHEILRwKYVSIGRCPL 231
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
46-150 |
5.94e-06 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 45.03 E-value: 5.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 46 QGNAPNIIIAGPPGVGKTTTIQCLARILlgDSYKEAVLELNASNERGIDVVRNKI-------KMFAQQKVTLP------- 111
Cdd:pfam13401 2 RFGAGILVLTGESGTGKTTLLRRLLEQL--PEVRDSVVFVDLPSGTSPKDLLRALlralglpLSGRLSKEELLaalqqll 79
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 17647857 112 --RGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALA 150
Cdd:pfam13401 80 laLAVAVVLIIDEAQHLSLEALEELRDLLNLSSKLLQLILV 120
|
|
| HLD_clamp |
cd18133 |
helical lid domain of clamp loader-like AAA+ proteins; Clamp loader complexes are multisubunit ... |
176-235 |
1.85e-05 |
|
helical lid domain of clamp loader-like AAA+ proteins; Clamp loader complexes are multisubunit complexes that play an important role in DNA replication. They open sliding clamps for assembly and close them around DNA, specifically targeting them to sites where DNA synthesis is initiated and orienting them correctly for replication. The subunits belong to the clamp loader clade of AAA+ superfamily.
Pssm-ID: 350838 [Multi-domain] Cd Length: 65 Bit Score: 42.07 E-value: 1.85e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 17647857 176 AQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNLQSTAQ--GFGDITAENVFKVC 235
Cdd:cd18133 4 EQLKRRLAAIAEQEKLKLDDAALQALAYISEGDLRKALNALQRAAAlgDDGKISLDRVYQAV 65
|
|
| PRK06090 |
PRK06090 |
DNA polymerase III subunit delta'; Validated |
104-182 |
2.98e-05 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180394 [Multi-domain] Cd Length: 319 Bit Score: 45.18 E-value: 2.98e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 17647857 104 AQQKVTLprGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKL 182
Cdd:PRK06090 100 AQESSQL--NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWL 176
|
|
| RuvB |
COG2255 |
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, ... |
1-73 |
3.27e-05 |
|
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, recombination and repair];
Pssm-ID: 441856 [Multi-domain] Cd Length: 337 Bit Score: 45.07 E-value: 3.27e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 17647857 1 MPEEPEKTADDKRSHLPWIEKYRPVKFKEIVGNEDTVARLSVF---ATQGNAP--NIIIAGPPGVGKTTtiqcLARIL 73
Cdd:COG2255 1 MAEEDRLSSSASEEEDALERSLRPKRLDEYIGQEKVKENLKIFieaAKKRGEAldHVLLYGPPGLGKTT----LAHII 74
|
|
| PRK07940 |
PRK07940 |
DNA polymerase III subunit delta'; Validated |
27-184 |
3.46e-05 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236134 [Multi-domain] Cd Length: 394 Bit Score: 45.29 E-value: 3.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 27 FKEIVGNEDTVARLSVfATQGNAPNII-----------IAGPPGVGKTTTIQCLARILLGDSYKE----------AVLEL 85
Cdd:PRK07940 4 WDDLVGQEAVVAELRA-AARAARADVAaagsgmthawlFTGPPGSGRSVAARAFAAALQCTDPDEpgcgecracrTVLAG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 86 NASNER---------GIDVVRNKIKMFAQQKVTlprGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEK 156
Cdd:PRK07940 83 THPDVRvvapeglsiGVDEVRELVTIAARRPST---GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPED 159
|
170 180
....*....|....*....|....*...
gi 17647857 157 IIEPIQSRCAMLRFTKLSDAQVLAKLIE 184
Cdd:PRK07940 160 VLPTIRSRCRHVALRTPSVEAVAEVLVR 187
|
|
| ruvB |
PRK00080 |
Holliday junction branch migration DNA helicase RuvB; |
23-73 |
4.08e-05 |
|
Holliday junction branch migration DNA helicase RuvB;
Pssm-ID: 234619 [Multi-domain] Cd Length: 328 Bit Score: 44.74 E-value: 4.08e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 17647857 23 RPVKFKEIVGNEDTVARLSVFAT----QGNAPN-IIIAGPPGVGKTTtiqcLARIL 73
Cdd:PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEaakkRGEALDhVLLYGPPGLGKTT----LANII 71
|
|
| DEXXQc_Upf1-like |
cd17934 |
DEXXQ-box helicase domain of Upf1-like helicase; The Upf1-like helicase family includes UPF1, ... |
53-128 |
6.86e-05 |
|
DEXXQ-box helicase domain of Upf1-like helicase; The Upf1-like helicase family includes UPF1, HELZ, Mov10L1, Aquarius, IGHMBP2 (SMUBP2), coronavirus Nsp13, and similar proteins. They belong to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 438708 [Multi-domain] Cd Length: 121 Bit Score: 41.84 E-value: 6.86e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 17647857 53 IIAGPPGVGKTTTIQCLARILLGDSYKEAVLeLNASNERGIDVVRnkikmfaqqkvtlprgrhkIVILDEADSMTE 128
Cdd:cd17934 3 LIQGPPGTGKTTTIAAIVLQLLKGLRGKRVL-VTAQSNVAVDNVD-------------------VVIIDEASQITE 58
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
2-73 |
6.89e-05 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 44.13 E-value: 6.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 2 PEEPEKTADDKRSHLPWIEKYRPVKFKEIVGNEDTVARL-----------SVFATQGNAP--NIIIAGPPGVGKTTTIQC 68
Cdd:COG0464 131 LAAPLVTYEDIGGLEEELLELREAILDDLGGLEEVKEELrelvalplkrpELREEYGLPPprGLLLYGPPGTGKTLLARA 210
|
....*
gi 17647857 69 LARIL 73
Cdd:COG0464 211 LAGEL 215
|
|
| RecA-like_protease |
cd19481 |
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ... |
50-126 |
1.07e-04 |
|
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410889 [Multi-domain] Cd Length: 158 Bit Score: 41.88 E-value: 1.07e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 17647857 50 PNIIIAGPPGVGKTTTIQCLARiLLGDSYkeAVLELNASNERGIDVVRNKI-KMFAQqkvtLPRGRHKIVILDEADSM 126
Cdd:cd19481 27 KGILLYGPPGTGKTLLAKALAG-ELGLPL--IVVKLSSLLSKYVGESEKNLrKIFER----ARRLAPCILFIDEIDAI 97
|
|
| Rad17 |
pfam03215 |
Rad17 P-loop domain; |
17-80 |
1.34e-04 |
|
Rad17 P-loop domain;
Pssm-ID: 367398 [Multi-domain] Cd Length: 186 Bit Score: 42.25 E-value: 1.34e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 17647857 17 PWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPN-----IIIAGPPGVGKTTTIQCLARIlLGDSYKE 80
Cdd:pfam03215 8 QWYEKYKPNCLEQLAVHKRKIKDVQEWLDAMFLENakhriLLISGPSGCGKSTVIKELSKE-LGPKYRE 75
|
|
| DEXXQc_SF1 |
cd18043 |
DEXXQ-box helicase domain of Superfamily 1 helicases; Superfamily 1 (SF1) helicases are ... |
48-126 |
1.63e-04 |
|
DEXXQ-box helicase domain of Superfamily 1 helicases; Superfamily 1 (SF1) helicases are nucleic acid motor proteins that couple ATP hydrolysis to translocation along with the concomitant unwinding of DNA or RNA. This is central to many aspects of cellular DNA and RNA metabolism and accordingly, they are implicated in a wide range of nucleic acid processing events including DNA replication, recombination, and repair as well as many aspects of RNA metabolism. Superfamily 1 helicases are members of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350801 [Multi-domain] Cd Length: 127 Bit Score: 40.64 E-value: 1.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 48 NAPNIIIAGPPGVGKTTTIQCLARILLGdsYKEAVLeLNASNERGIDVVRNKIKMFAQQKV--TLPRGRHK--IVILDEA 123
Cdd:cd18043 13 NGKNVVIQGPPGTGKSQTIANIIANALA--RGKRVL-FVSEKKAALDVVRFPCWIMSPLSVsqYLPLNRNLfdLVIFDEA 89
|
...
gi 17647857 124 DSM 126
Cdd:cd18043 90 SQI 92
|
|
| RuvB_N |
pfam05496 |
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the ... |
23-73 |
1.77e-04 |
|
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the RuvABC revolvasome which catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalyzed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Pssm-ID: 398900 [Multi-domain] Cd Length: 159 Bit Score: 41.33 E-value: 1.77e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 17647857 23 RPVKFKEIVGNEDTVARLSVF---ATQGNAP--NIIIAGPPGVGKTTtiqcLARIL 73
Cdd:pfam05496 2 RPRTLDEYIGQEKVKENLKIFieaAKQRGEAldHVLLYGPPGLGKTT----LANII 53
|
|
| Viral_helicase1 |
pfam01443 |
Viral (Superfamily 1) RNA helicase; Helicase activity for this family has been demonstrated ... |
52-123 |
1.81e-04 |
|
Viral (Superfamily 1) RNA helicase; Helicase activity for this family has been demonstrated and NTPase activity. This helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis.
Pssm-ID: 366646 [Multi-domain] Cd Length: 227 Bit Score: 42.37 E-value: 1.81e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 17647857 52 IIIAGPPGVGKTTTIQCLARilLGDSYKEAVLELnasNERGIDVVRNKIKMFAQQKVTLPRGRHKIVILDEA 123
Cdd:pfam01443 1 IVVHGVPGCGKSTLIRKLLR--TSRVIRPTAELR---TEGKPDLPNLNVRTVDTFLMALLKPTGKILILDEY 67
|
|
| MMAA-like |
cd03114 |
methylmalonic aciduria associated protein; Methylmalonyl Co-A mutase-associated GTPase MeaB ... |
46-83 |
2.35e-04 |
|
methylmalonic aciduria associated protein; Methylmalonyl Co-A mutase-associated GTPase MeaB and its human homolog, methylmalonic aciduria associated protein (MMAA) are metallochaperones that function as a G-protein chaperone that assists AdoCbl cofactor delivery to the methylmalonyl-CoA mutase (MCM) and reactivation of the enzyme during catalysis. A member of the family, Escherichia coli ArgK, was previously thought to be a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Pssm-ID: 349768 Cd Length: 252 Bit Score: 42.17 E-value: 2.35e-04
10 20 30
....*....|....*....|....*....|....*...
gi 17647857 46 QGNAPNIIIAGPPGVGKTTTIQCLARILLGDSYKEAVL 83
Cdd:cd03114 43 AGRAFRVGITGPPGAGKSTLIEALGRLLREQGHRVAVL 80
|
|
| ExeA |
COG3267 |
Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, ... |
52-136 |
7.27e-04 |
|
Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442498 [Multi-domain] Cd Length: 261 Bit Score: 40.54 E-value: 7.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 52 IIIAGPPGVGKTTTIQCLARiLLGDSYKEAVLeLNASNER-----------GIDV-VRNKIKMFAQQKVTL----PRGRH 115
Cdd:COG3267 46 VVLTGEVGTGKTTLLRRLLE-RLPDDVKVAYI-PNPQLSPaellraiadelGLEPkGASKADLLRQLQEFLlelaAAGRR 123
|
90 100
....*....|....*....|.
gi 17647857 116 KIVILDEADSMTEGAQQALRR 136
Cdd:COG3267 124 VVLIIDEAQNLPPETLEELRL 144
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
51-124 |
8.43e-04 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 38.81 E-value: 8.43e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 17647857 51 NIIIAGPPGVGKTTTIQCLARILLGDSYKEAVL--ELNASNERGIDVVRNKIKMFAQQKVTlPRGRHK-IVILDEAD 124
Cdd:pfam07728 1 GVLLVGPPGTGKTELAERLAAALSNRPVFYVQLtrDTTEEDLFGRRNIDPGGASWVDGPLV-RAAREGeIAVLDEIN 76
|
|
| PRK05707 |
PRK05707 |
DNA polymerase III subunit delta'; Validated |
93-182 |
8.72e-04 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180215 [Multi-domain] Cd Length: 328 Bit Score: 40.46 E-value: 8.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 93 IDVVRnKIKMFAQQKVTLprGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTK 172
Cdd:PRK05707 88 VDQVR-ELVSFVVQTAQL--GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPL 164
|
90
....*....|
gi 17647857 173 LSDAQVLAKL 182
Cdd:PRK05707 165 PSNEESLQWL 174
|
|
| AAA_16 |
pfam13191 |
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
29-76 |
9.06e-04 |
|
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 433025 [Multi-domain] Cd Length: 167 Bit Score: 39.41 E-value: 9.06e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 17647857 29 EIVGNEDTVARL-SVF--ATQGNAPNIIIAGPPGVGKTTTIQCLARILLGD 76
Cdd:pfam13191 1 RLVGREEELEQLlDALdrVRSGRPPSVLLTGEAGTGKTTLLRELLRALERD 51
|
|
| McrB |
COG1401 |
5-methylcytosine-specific restriction endonuclease McrBC, GTP-binding regulatory subunit McrB ... |
2-76 |
1.01e-03 |
|
5-methylcytosine-specific restriction endonuclease McrBC, GTP-binding regulatory subunit McrB [Defense mechanisms];
Pssm-ID: 441011 [Multi-domain] Cd Length: 477 Bit Score: 40.52 E-value: 1.01e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 17647857 2 PEEPEKTADDKRSHLPWIEKYRPVKFKEIVgnEDTVARLSVfatqgnAPNIIIAGPPGVGKTTTIQCLARILLGD 76
Cdd:COG1401 182 SAAEELYSEDLESEDDYLKDLLREKFEETL--EAFLAALKT------KKNVILAGPPGTGKTYLARRLAEALGGE 248
|
|
| PRK13695 |
PRK13695 |
NTPase; |
51-140 |
1.32e-03 |
|
NTPase;
Pssm-ID: 237475 Cd Length: 174 Bit Score: 39.13 E-value: 1.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 51 NIIIAGPPGVGKTTTIQCLARILLGDSYKEA---VLELNASNER-G---IDVVRNKIKMFAQQKVTlprGRHKI----VI 119
Cdd:PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKVGgfyTEEVREGGKRiGfkiIDLDTGEEGILARVGFP---SRPRVgkyvVN 78
|
90 100
....*....|....*....|.
gi 17647857 120 LDEADSMTEGAQQALRRTMEI 140
Cdd:PRK13695 79 LEDLERIGIPALERALEEADV 99
|
|
| AAA_18 |
pfam13238 |
AAA domain; |
52-121 |
1.63e-03 |
|
AAA domain;
Pssm-ID: 433052 [Multi-domain] Cd Length: 128 Bit Score: 38.18 E-value: 1.63e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 17647857 52 IIIAGPPGVGKTTTIQCLARIL-LGDSYKEAVLELNASNERGIDVVRNKIKMFAQQKVTL-------PRGRHKIVILD 121
Cdd:pfam13238 1 ILITGTPGVGKTTLAKELSKRLgFGDNVRDLALENGLVLGDDPETRESKRLDEDKLDRLLdlleenaALEEGGNLIID 78
|
|
| RecA-like_Thep1 |
cd19482 |
RecA-like domain of the nucleoside-triphosphatase THEP1 family; This family represents the ... |
52-139 |
2.23e-03 |
|
RecA-like domain of the nucleoside-triphosphatase THEP1 family; This family represents the THEP1 family ATPase domain. It includes nucleoside-triphosphatase THEP 1 from Aquifex aeolicus (aaTHEP1) a nucleoside-phosphatase, with activity towards ATP, GTP, CTP, TTP and UTP; and which may hydrolyze nucleoside diphosphates with lower efficiency. The catalytic function of aaTHEP1 remains unclear, it may be a DNA/RNA modifying enzyme. Human THEP1 (hsTHEP1) may have a general function in many human tissues, as it is widely expressed in most examined tissues (such as in brain, heart, lymph node, skin, pancreas); it is especially highly expressed in embryonic and various tumor tissues. This family belongs to the RecA-like NTPase superfamily which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410890 [Multi-domain] Cd Length: 164 Bit Score: 38.35 E-value: 2.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 52 IIIAGPPGVGKTTTIQCLARILLGDSYKEA---VLELNASNER-G---IDVVRNKIKMFAQQKVTLPRGRHKIVILDEAD 124
Cdd:cd19482 1 IFITGPPGVGKTTLVLKVAELLKESGLKVGgfyTPEVREGGKRiGfkiVDLASGERGWLARVGAGSPKVGKYGVDVDELE 80
|
90
....*....|....*
gi 17647857 125 SMTEgaqQALRRTME 139
Cdd:cd19482 81 EIAV---PALRRALE 92
|
|
| Mg_chelatase |
pfam01078 |
Magnesium chelatase, subunit ChlI; Magnesium-chelatase is a three-component enzyme that ... |
27-89 |
2.55e-03 |
|
Magnesium chelatase, subunit ChlI; Magnesium-chelatase is a three-component enzyme that catalyzes the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.
Pssm-ID: 426032 [Multi-domain] Cd Length: 207 Bit Score: 38.67 E-value: 2.55e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 17647857 27 FKEIVGNEDTVARLSVFATQGNapNIIIAGPPGVGKTTTIQCLARILLGDSYKEAvLELNASN 89
Cdd:pfam01078 2 LADVKGQEQAKRALEIAAAGGH--NLLMIGPPGSGKTMLAKRLPGILPPLTEAEA-LEVTAIH 61
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
52-125 |
2.55e-03 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 37.99 E-value: 2.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 52 IIIAGPPGVGKTTTIQCLARiLLGDSYKEAVLELNASNERGIDVVRNKIKMFAQ------QKVTLPR---GRHKIVILDE 122
Cdd:cd00267 28 VALVGPNGSGKSTLLRAIAG-LLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQlsggqrQRVALARallLNPDLLLLDE 106
|
...
gi 17647857 123 ADS 125
Cdd:cd00267 107 PTS 109
|
|
| THEP1 |
COG1618 |
Nucleoside-triphosphatase THEP1 [Nucleotide transport and metabolism]; |
50-79 |
2.76e-03 |
|
Nucleoside-triphosphatase THEP1 [Nucleotide transport and metabolism];
Pssm-ID: 441225 [Multi-domain] Cd Length: 175 Bit Score: 37.96 E-value: 2.76e-03
10 20 30
....*....|....*....|....*....|
gi 17647857 50 PNIIIAGPPGVGKTTTIQCLARILLGDSYK 79
Cdd:COG1618 1 MKIFITGRPGVGKTTLLLKVVEELRDEGLR 30
|
|
| CDC6 |
COG1474 |
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair]; |
22-128 |
3.14e-03 |
|
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];
Pssm-ID: 441083 [Multi-domain] Cd Length: 389 Bit Score: 39.06 E-value: 3.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 22 YRPvkfKEIVGNEDTVARLSVF---ATQGNAP-NIIIAGPPGVGKTTTIQCLARILLGDSYKE----AVLELNASN---- 89
Cdd:COG1474 23 YVP---DRLPHREEEIEELASAlrpALRGERPsNVLIYGPTGTGKTAVAKYVLEELEEEAEERgvdvRVVYVNCRQastr 99
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 17647857 90 ------------------ERGI--DVVRNKIKmfaqqKVTLPRGRHKIVILDEADSMTE 128
Cdd:COG1474 100 yrvlsrileelgsgedipSTGLstDELFDRLY-----EALDERDGVLVVVLDEIDYLVD 153
|
|
| HypB |
COG0378 |
Hydrogenase/urease maturation factor HypB, Ni2+-binding GTPase [Posttranslational modification, ... |
52-84 |
3.79e-03 |
|
Hydrogenase/urease maturation factor HypB, Ni2+-binding GTPase [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440147 [Multi-domain] Cd Length: 200 Bit Score: 37.73 E-value: 3.79e-03
10 20 30
....*....|....*....|....*....|...
gi 17647857 52 IIIAGPPGVGKTTTIQCLARiLLGDSYKEAVLE 84
Cdd:COG0378 16 VNLMGSPGSGKTTLLEKTIR-ALKDRLRIAVIE 47
|
|
| NTPase_1 |
pfam03266 |
NTPase; This domain is found across all species from bacteria to human, and the function was ... |
51-79 |
4.90e-03 |
|
NTPase; This domain is found across all species from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme. The sequence carries both a Walker A and Walker B motif which together are characteriztic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue.
Pssm-ID: 460869 Cd Length: 168 Bit Score: 37.22 E-value: 4.90e-03
10 20
....*....|....*....|....*....
gi 17647857 51 NIIIAGPPGVGKTTTIQCLARILLGDSYK 79
Cdd:pfam03266 1 RIFITGPPGVGKTTLVLKVAELLKSSGVK 29
|
|
| MCM8 |
cd17759 |
DNA helicase Mcm8; Mcm8 plays an important role homologous recombination repair. It forms a ... |
49-139 |
5.33e-03 |
|
DNA helicase Mcm8; Mcm8 plays an important role homologous recombination repair. It forms a complex with Mcm9 that is required for homologous recombination (HR) repair induced by DNA interstrand crosslinks (ICLs).
Pssm-ID: 350665 [Multi-domain] Cd Length: 289 Bit Score: 37.90 E-value: 5.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 49 APNIIIAGPPGVGKTTTIQCLARILLGDSYKEAvlelNASNERGIDVVRNKIKM---FAQQKVTLPRGRHKIVILDEADS 125
Cdd:cd17759 43 DPHVLIVGDPGLGKSQMLQAACNIAPRGVYVCG----NTTTTSGLTVTLTKDGRsgdFALEAGALVLGDQGICGIDEFDK 118
|
90
....*....|....
gi 17647857 126 MTEgAQQALRRTME 139
Cdd:cd17759 119 MGS-QHQALLEAME 131
|
|
| AAA_19 |
pfam13245 |
AAA domain; |
48-74 |
5.88e-03 |
|
AAA domain;
Pssm-ID: 433059 [Multi-domain] Cd Length: 136 Bit Score: 36.43 E-value: 5.88e-03
10 20
....*....|....*....|....*..
gi 17647857 48 NAPNIIIAGPPGVGKTTTIQCLARILL 74
Cdd:pfam13245 10 PSKVVLLTGGPGTGKTTTIRHIVALLV 36
|
|
| DEXXQc_SETX |
cd18042 |
DEXXQ-box helicase domain of SETX; The RNA/DNA helicase senataxin (SETX) plays a role in ... |
44-101 |
5.97e-03 |
|
DEXXQ-box helicase domain of SETX; The RNA/DNA helicase senataxin (SETX) plays a role in transcription, neurogenesis, and antiviral response. SEXT is an R-loop-associated protein that is thought to function as an RNA/DNA helicase. R-loops consist of RNA/DNA hybrids, formed during transcription when nascent RNA hybridizes to the DNA template strand, displacing the non-template DNA strand. Mutations in SETX are linked to two neurodegenerative disorders: ataxia with oculomotor apraxia type 2 (AOA2) and amyotrophic lateral sclerosis type 4 (ALS4). S. cerevisiae homolog splicing endonuclease 1 (Sen1) is an exclusively nuclear protein, important for nucleolar organization. S. cerevisiae Sen1 and its ortholog, the Schizosaccharomyces pombe Sen1, share conserved domains and belong to the family I class of helicases. Both proteins translocate 5' to 3' and unwind both DNA and RNA duplexes and also RNA/DNA hybrids in vitro. SETX is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 438712 [Multi-domain] Cd Length: 218 Bit Score: 37.58 E-value: 5.97e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 17647857 44 ATQGNAPNIIIAGPPGVGKTTTIQCLARILLGDSYKEAVLELNASNERGIDVVRNKIK 101
Cdd:cd18042 12 ALQNSPGITLIQGPPGTGKTKTIVGILSVLLAGKYRKYYEKVKKKLRKLQRNLNNKKK 69
|
|
| HolA |
COG1466 |
DNA polymerase III, delta subunit [Replication, recombination and repair]; |
113-281 |
6.39e-03 |
|
DNA polymerase III, delta subunit [Replication, recombination and repair];
Pssm-ID: 441075 [Multi-domain] Cd Length: 305 Bit Score: 37.93 E-value: 6.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 113 GRHKIVILDEADSMT--EGAQQALRRTMEIYSSTTRFALACNT---SEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAK 187
Cdd:COG1466 61 GERRLVIVRNAEFLKkpGEGLEALEAYLANPPPDTVLVLTAGKldkRKKLFKALEKAGVVVECYPLKERELPAWIRQRLK 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 188 WEKLNYTEDGLEAIVFTAQGDMR---QGLNNLQSTAQGFGDITAE------------NVFKVCDEphpklleemihhCAA 252
Cdd:COG1466 141 AAGLRIDPDAAQLLAERVGGDLLalaQELEKLALYAGDGGTITLEdvealvgdsaefNVFDLADA------------LLA 208
|
170 180
....*....|....*....|....*....
gi 17647857 253 NDIHKAYKILAKLWKLGYSPEDIIANIFR 281
Cdd:COG1466 209 GDAARALRILRRLLAEGEEPVLILAALAR 237
|
|
| Kti12 |
COG4088 |
tRNA uridine 5-carbamoylmethylation protein Kti12 (Killer toxin insensitivity protein) ... |
52-98 |
6.55e-03 |
|
tRNA uridine 5-carbamoylmethylation protein Kti12 (Killer toxin insensitivity protein) [Translation, ribosomal structure and biogenesis, Defense mechanisms];
Pssm-ID: 443264 [Multi-domain] Cd Length: 179 Bit Score: 37.01 E-value: 6.55e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 17647857 52 IIIAGPPGVGKTTTIQCLAR---------ILLG-DSYKEAVLELNASNERGIDVVRN 98
Cdd:COG4088 7 LILTGPPGSGKTTFAKALAQrlyaegiavALLHsDDFRRFLVNESFPKETYEEVVED 63
|
|
| DEXXQc_DNA2 |
cd18041 |
DEXXQ-box helicase domain of DNA2; DNA2 (DNA Replication Helicase/Nuclease 2) possesses ... |
53-83 |
6.92e-03 |
|
DEXXQ-box helicase domain of DNA2; DNA2 (DNA Replication Helicase/Nuclease 2) possesses different enzymatic activities, such as single-stranded DNA (ssDNA)-dependent ATPase, 5-3 helicase, and endonuclease activities, and is involved in DNA replication and DNA repair in the nucleus and mitochondrion. It is involved in Okazaki fragment processing by cleaving long flaps that escape FEN1: flaps that are longer than 27 nucleotides are coated by replication protein A complex (RPA), leading to recruit DNA2 which cleaves the flap until it is too short to bind RPA and becomes a substrate for FEN1. It is also involved in 5-end resection of DNA during double-strand break (DSB) repair; it is recruited by BLM and mediates the cleavage of 5-ssDNA, while the 3-ssDNA cleavage is prevented by the presence of RPA. DNA2 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350799 [Multi-domain] Cd Length: 203 Bit Score: 37.22 E-value: 6.92e-03
10 20 30
....*....|....*....|....*....|.
gi 17647857 53 IIAGPPGVGKTTTIQCLARILLgdSYKEAVL 83
Cdd:cd18041 21 LILGMPGTGKTTTIAALVRILV--ALGKSVL 49
|
|
| HLD_clamp_pol_III_gamma_tau |
cd18137 |
helical lid domain of DNA polymerase III subunits gamma and tau; DNA polymerase III subunit ... |
173-231 |
6.96e-03 |
|
helical lid domain of DNA polymerase III subunits gamma and tau; DNA polymerase III subunit gamma/tau is part of the DNA polymerase III holoenzyme. Gamma and tau subunits are isoforms, both containing the helical lid domain. Gamma interacts with the delta subunit to transfer the beta subunit on the DNA while tau serves as a scaffold to help in the dimerization of the core complex. Both are members of the clamp-loader clade of the AAA+ superfamily.
Pssm-ID: 350839 [Multi-domain] Cd Length: 65 Bit Score: 34.79 E-value: 6.96e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 173 LSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNL-QSTAQGFGDITAENV 231
Cdd:cd18137 1 ISVEDIVGRLAHILEKEGIEIEDEALELIARAAEGSMRDALSLLdQAIAFGGGRVTLDDV 60
|
|
| DEXXQc_Helz-like |
cd18038 |
DEXXQ/H-box helicase domain of Helz-like helicase; This subfamily contains HELZ, Mov10L1, and ... |
42-74 |
7.29e-03 |
|
DEXXQ/H-box helicase domain of Helz-like helicase; This subfamily contains HELZ, Mov10L1, and similar proteins. Helicase with zinc finger (HELZ) acts as a helicase that plays a role in RNA metabolism during development. Moloney leukemia virus 10-like protein 1 (Mov10L1) binds Piwi-interacting RNA (piRNA) precursors to initiate piRNA processing. All are members of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350796 [Multi-domain] Cd Length: 229 Bit Score: 37.21 E-value: 7.29e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 17647857 42 VFATQGNAPNIIIaGPPGVGKTTTI----------QCLARILL 74
Cdd:cd18038 14 VTGTSRPPPYIIF-GPPGTGKTVTLveailqvlrqPPEARILV 55
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
26-99 |
7.54e-03 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 37.62 E-value: 7.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 26 KFKEIVGNEDTVARLSVFATQGNAPNII-IAGPPGVGKTTTIQCLARILL----------GDSYKEAVLE-LNASNER-G 92
Cdd:TIGR00064 53 YLKEILKEDLLKNTDLELIVEENKPNVIlFVGVNGVGKTTTIAKLANKLKkqgksvllaaGDTFRAAAIEqLEEWAKRlG 132
|
....*..
gi 17647857 93 IDVVRNK 99
Cdd:TIGR00064 133 VDVIKQK 139
|
|
| BMS1 |
cd01882 |
Bms1, an essential GTPase, promotes assembly of preribosomal RNA processing complexes; Bms1 is ... |
42-71 |
7.56e-03 |
|
Bms1, an essential GTPase, promotes assembly of preribosomal RNA processing complexes; Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Pssm-ID: 206669 [Multi-domain] Cd Length: 231 Bit Score: 37.32 E-value: 7.56e-03
10 20 30
....*....|....*....|....*....|..
gi 17647857 42 VFATQGNAPNIIIA--GPPGVGKTTTIQCLAR 71
Cdd:cd01882 30 VDRTPEEPPPLVVVvvGPPGVGKSTLIRSLIK 61
|
|
| RecD |
COG0507 |
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) ... |
47-126 |
8.12e-03 |
|
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];
Pssm-ID: 440273 [Multi-domain] Cd Length: 514 Bit Score: 38.03 E-value: 8.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17647857 47 GNAPNIIIAGPPGVGKTTTIQCLARILLGDSYKEAVL------ELNASNERGIDVV--------RNKIKMFAQQKVTlPR 112
Cdd:COG0507 138 TTRRVSVLTGGAGTGKTTTLRALLAALEALGLRVALAaptgkaAKRLSESTGIEARtihrllglRPDSGRFRHNRDN-PL 216
|
90
....*....|....
gi 17647857 113 GRHKIVILDEAdSM 126
Cdd:COG0507 217 TPADLLVVDEA-SM 229
|
|
| |
