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Conserved domains on  [gi|18405682|ref|NP_564708|]
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Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
3a0801s09 super family cl36792
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 12-104 1.24e-10

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


The actual alignment was detected with superfamily member TIGR00990:

Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 61.54  E-value: 1.24e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18405682    12 EKGHQLYRDGKYKEALLFYTEALtaaKAKPQKIaLHSNRAACYLKLHDFIKAAEECTCVLELDQKHSGALMLRAQTLVTL 91
Cdd:TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAI---ECKPDPV-YYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207

                          90
                  ....*....|...
gi 18405682    92 KEYQSALFDVTRL 104
Cdd:TIGR00990 208 GKYADALLDLTAS 220
 
Name Accession Description Interval E-value
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 12-104 1.24e-10

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 61.54  E-value: 1.24e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18405682    12 EKGHQLYRDGKYKEALLFYTEALtaaKAKPQKIaLHSNRAACYLKLHDFIKAAEECTCVLELDQKHSGALMLRAQTLVTL 91
Cdd:TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAI---ECKPDPV-YYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207

                          90
                  ....*....|...
gi 18405682    92 KEYQSALFDVTRL 104
Cdd:TIGR00990 208 GKYADALLDLTAS 220
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
13-117 2.03e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 59.64  E-value: 2.03e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18405682  13 KGHQLYRDGKYKEALLFYTEALtaaKAKPQKIALHSNRAACYLKLHDFIKAAEECTCVLELDQKHSGALMLRAQTLVTLK 92
Cdd:COG0457  14 LGLAYRRLGRYEEAIEDYEKAL---ELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALG 90

                        90       100
                ....*....|....*....|....*.
gi 18405682  93 EYQSALFDVTRLMELNP-DSEVYQNL 117
Cdd:COG0457  91 RYEEALEDYDKALELDPdDAEALYNL 116
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 12-97 1.59e-04

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 42.47  E-value: 1.59e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18405682   12 EKGHQLYRDGKYKEALLFYTEALtaaKAKPQKIALHSNRAACYLKLHDFIKAAEECTCVLELDQKHSGALMLRAQTLVTL 91
Cdd:PLN03088   7 DKAKEAFVDDDFALAVDLYTQAI---DLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83


                 ....*.
gi 18405682   92 KEYQSA 97
Cdd:PLN03088  84 EEYQTA 89
TPR_12 pfam13424
Tetratricopeptide repeat;
6-76 1.32e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 36.60  E-value: 1.32e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 18405682     6 TASGKVEKGHQLYRDGKYKEALLFYTEALTAAKA-----KPQKIALHSNRAACYLKLHDFIKAAEECTCVLELDQK 76
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 47-77 7.36e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 33.57  E-value: 7.36e-03
                           10        20        30
                   ....*....|....*....|....*....|.
gi 18405682     47 HSNRAACYLKLHDFIKAAEECTCVLELDQKH 77
Cdd:smart00028   4 LYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
 
Name Accession Description Interval E-value
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 12-104 1.24e-10

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 61.54  E-value: 1.24e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18405682    12 EKGHQLYRDGKYKEALLFYTEALtaaKAKPQKIaLHSNRAACYLKLHDFIKAAEECTCVLELDQKHSGALMLRAQTLVTL 91
Cdd:TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAI---ECKPDPV-YYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207

                          90
                  ....*....|...
gi 18405682    92 KEYQSALFDVTRL 104
Cdd:TIGR00990 208 GKYADALLDLTAS 220
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
13-117 2.03e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 59.64  E-value: 2.03e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18405682  13 KGHQLYRDGKYKEALLFYTEALtaaKAKPQKIALHSNRAACYLKLHDFIKAAEECTCVLELDQKHSGALMLRAQTLVTLK 92
Cdd:COG0457  14 LGLAYRRLGRYEEAIEDYEKAL---ELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALG 90

                        90       100
                ....*....|....*....|....*.
gi 18405682  93 EYQSALFDVTRLMELNP-DSEVYQNL 117
Cdd:COG0457  91 RYEEALEDYDKALELDPdDAEALYNL 116
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
14-125 2.73e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 59.25  E-value: 2.73e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18405682  14 GHQLYRDGKYKEALLFYTEALtaaKAKPQKIALHSNRAACYLKLHDFIKAAEECTCVLELDQKHSGALMLRAQTLVTLKE 93
Cdd:COG0457  49 GLAYLRLGRYEEALADYEQAL---ELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGR 125

                        90       100       110
                ....*....|....*....|....*....|..
gi 18405682  94 YQSALFDVTRLMELNPDSEVYQNLEARLRTQL 125
Cdd:COG0457 126 YDEAIEAYERALELDPDDADALYNLGIALEKL 157
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
17-110 3.13e-10

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 58.77  E-value: 3.13e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18405682  17 LYRDGKYKEALLFYTEALtaaKAKPQKIALHSNRAACYLKLHDFIKAAEECTCVLELDQKHSGALMLRAQTLVTLKEYQS 96
Cdd:COG4785  83 YDSLGDYDLAIADFDQAL---ELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYEL 159

                        90
                ....*....|....
gi 18405682  97 ALFDVTRLMELNPD 110
Cdd:COG4785 160 AIADLEKALELDPN 173
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 7-121 4.48e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 56.17  E-value: 4.48e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18405682   7 ASGKVEKGHQLYRDGKYKEALLFYTEALtaaKAKPQKIALHSNRAACYLKLHDFIKAAEECTCVLELDQKHSGALMLRAQ 86
Cdd:COG4235  17 AEGWLLLGRAYLRLGRYDEALAAYEKAL---RLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGL 93

                        90       100       110
                ....*....|....*....|....*....|....*
gi 18405682  87 TLVTLKEYQSALFDVTRLMELNPDSEVYQNLEARL 121
Cdd:COG4235  94 AAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 14-117 1.06e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 55.77  E-value: 1.06e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18405682  14 GHQLYRDGKYKEALLFYTEALtaaKAKPQKIALHSNRAACYLKLHDFIKAAEECTCVLELDQKHSGALMLRAQTLVTLKE 93
Cdd:COG3914  85 ALLLQALGRYEEALALYRRAL---ALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGR 161

                        90       100
                ....*....|....*....|....*
gi 18405682  94 YQSALFDVTRLMELNPDS-EVYQNL 117
Cdd:COG3914 162 LEEAIAALRRALELDPDNaEALNNL 186
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 14-152 3.36e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 54.23  E-value: 3.36e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18405682  14 GHQLYRDGKYKEALLFYTEALtaaKAKPQKIALHSNRAACYLKLHDFIKAAEECTCVLELDQKHSGALMLRAQTLVTLKE 93
Cdd:COG3914 119 GNLLLALGRLEEALAALRRAL---ALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGR 195

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 18405682  94 YQSALFDVTRLMELNPDS-EVYQNLearLRTQLSLAPIPESEAELEEESDVEQDAEDKES 152
Cdd:COG3914 196 LEEAIAAYRRALELDPDNaDAHSNL---LFALRQACDWEVYDRFEELLAALARGPSELSP 252
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
13-178 2.70e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 50.39  E-value: 2.70e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18405682  13 KGHQLYRDGKYKEALLFYTEALtaaKAKPQKIALHSNRAACYLKLHDFIKAAEECTCVLELDQKHSGALMLRAQTLVTLK 92
Cdd:COG0457  82 LGLALQALGRYEEALEDYDKAL---ELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLG 158

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18405682  93 EYQSALFDVTRLMELNPDSEVYQNLEARLRTQLSLAPIPESEAELEEESDVEQDAEDKESREVELGVNERRDKRFESVVS 172
Cdd:COG0457 159 RYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAAL 238


                ....*.
gi 18405682 173 LRRDLE 178
Cdd:COG0457 239 ALYQYR 244
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
17-110 6.94e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 46.32  E-value: 6.94e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18405682  17 LYRDGKYKEALLFYTEALtaaKAKPQKIALHSNRAACYLKLHDFiKAAEECTCVLELDQKHSGALMLRAQTLVTLKEYQS 96
Cdd:COG3063   2 YLKLGDLEEAEEYYEKAL---ELDPDNADALNNLGLLLLEQGRY-DEAIALEKALKLDPNNAEALLNLAELLLELGDYDE 77

                        90
                ....*....|....
gi 18405682  97 ALFDVTRLMELNPD 110
Cdd:COG3063  78 ALAYLERALELDPS 91
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 4-125 1.32e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 46.72  E-value: 1.32e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18405682   4 AVTASGKVEKGHQLYRDGKYKEALLFYTEALtaaKAKPQKIALHSNRAACYLKLHDFIKAAEECTCVLELDQKHSGALML 83
Cdd:COG4783   1 AACAEALYALAQALLLAGDYDEAEALLEKAL---ELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLN 77

                        90       100       110       120
                ....*....|....*....|....*....|....*....|..
gi 18405682  84 RAQTLVTLKEYQSALFDVTRLMELNPDSEVYQNLEARLRTQL 125
Cdd:COG4783  78 LGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRAL 119
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 19-125 1.72e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 48.19  E-value: 1.72e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18405682  19 RDGKYKEALLFYTEALtaaKAKPQKIALHSNRAACYLKLHDFIKAAEECTCVLELDQKHSGALMLRAQTLVTLKEYQSAL 98
Cdd:COG2956 122 QEGDWEKAIEVLERLL---KLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAI 198

                        90       100
                ....*....|....*....|....*..
gi 18405682  99 FDVTRLMELNPDSEVYQNLEARLRTQL 125
Cdd:COG2956 199 AALERALEQDPDYLPALPRLAELYEKL 225
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 16-121 2.73e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 47.42  E-value: 2.73e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18405682  16 QLYR-DGKYKEALLFYTEALtaaKAKPQKIALHSNRAACYLKLHDFIKAAEECTCVLELDQKHSGALMLRAQTLVTLKEY 94
Cdd:COG2956  50 NLYRrRGEYDRAIRIHQKLL---ERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDW 126

                        90       100
                ....*....|....*....|....*..
gi 18405682  95 QSALFDVTRLMELNPDSEVYQNLEARL 121
Cdd:COG2956 127 EKAIEVLERLLKLGPENAHAYCELAEL 153
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
15-111 8.94e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 45.68  E-value: 8.94e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18405682  15 HQLYRDGKYKEALLFYTEALTAAKAKPQKIALHSNRAACYLKLHDFIKAAEECTCVLELDQKHSGALMLRAQTLVTLKEY 94
Cdd:COG4785  44 LALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDY 123

                        90
                ....*....|....*..
gi 18405682  95 QSALFDVTRLMELNPDS 111
Cdd:COG4785 124 DAALEDFDRALELDPDY 140
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 12-124 1.45e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 45.49  E-value: 1.45e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18405682  12 EKGHQLYRDGKYKEALLFYTEALtaaKAKPQKIALHSNRAACYLKLHDFIKAAEECTCVLELDQKHSGALMLRAQTLVTL 91
Cdd:COG2956 149 ELAELYLEQGDYDEAIEALEKAL---KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKL 225

                        90       100       110
                ....*....|....*....|....*....|...
gi 18405682  92 KEYQSALFDVTRLMELNPDSEVYQNLEARLRTQ 124
Cdd:COG2956 226 GDPEEALELLRKALELDPSDDLLLALADLLERK 258
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 14-117 3.79e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 44.60  E-value: 3.79e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18405682  14 GHQLYRDGKYKEALLFYTEALtaaKAKPQKIALHSNRAACYLKLHDFIKAAEECTCVLELDQKHSGALMLRAQTLVTLKE 93
Cdd:COG3914 153 GEALRRLGRLEEAIAALRRAL---ELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACD 229

                        90       100
                ....*....|....*....|....
gi 18405682  94 YQSALFDVTRLMELNPDSEVYQNL 117
Cdd:COG3914 230 WEVYDRFEELLAALARGPSELSPF 253
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
38-117 5.51e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 43.46  E-value: 5.51e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18405682  38 KAKPQKIALHSNRAACYLKLHDFIKAAEECTCVLELDQKHSGALMLRAQTLVTLKEYQSALFDVTRLMELNPDS-EVYQN 116
Cdd:COG0457   2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDaEALNN 81


                .
gi 18405682 117 L 117
Cdd:COG0457  82 L 82
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 13-110 7.08e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 43.92  E-value: 7.08e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18405682    13 KGHQLYRDGKYKEALLFYTEALtaaKAKPQKIALHSNRAACYLKLHDFIKAAEECTCVLELDQKHSGALMLRAQTLVTLK 92
Cdd:TIGR02917 199 KGDLLLSLGNIELALAAYRKAI---ALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKK 275

                          90
                  ....*....|....*...
gi 18405682    93 EYQSALFDVTRLMELNPD 110
Cdd:TIGR02917 276 NYEDARETLQDALKSAPE 293
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 16-121 1.40e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 42.41  E-value: 1.40e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18405682  16 QLYRD-GKYKEALLFYTEALtaaKAKPQKIALHSNRAACYLKLHDFIKAAEECTCVLELDQKHSGALMLRAQTLVTLKEY 94
Cdd:COG2956  84 QDYLKaGLLDRAEELLEKLL---ELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDY 160

                        90       100
                ....*....|....*....|....*..
gi 18405682  95 QSALFDVTRLMELNPDSEVYQNLEARL 121
Cdd:COG2956 161 DEAIEALEKALKLDPDCARALLLLAEL 187
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 7-117 1.41e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 42.41  E-value: 1.41e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18405682   7 ASGKVEKGHQLYRDGKYKEALLFYTEALtaaKAKPQKIALHSNRAACYLKLHDFIKAAEECTCVLELDQKHSGALMLRAQ 86
Cdd:COG2956   8 ALGWYFKGLNYLLNGQPDKAIDLLEEAL---ELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQ 84

                        90       100       110
                ....*....|....*....|....*....|..
gi 18405682  87 TLVTLKEYQSALFDVTRLMELNPDS-EVYQNL 117
Cdd:COG2956  85 DYLKAGLLDRAEELLEKLLELDPDDaEALRLL 116
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 12-97 1.59e-04

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 42.47  E-value: 1.59e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18405682   12 EKGHQLYRDGKYKEALLFYTEALtaaKAKPQKIALHSNRAACYLKLHDFIKAAEECTCVLELDQKHSGALMLRAQTLVTL 91
Cdd:PLN03088   7 DKAKEAFVDDDFALAVDLYTQAI---DLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83


                 ....*.
gi 18405682   92 KEYQSA 97
Cdd:PLN03088  84 EEYQTA 89
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 16-117 6.50e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 39.56  E-value: 6.50e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18405682  16 QLYRDGKYKEALLFYTEALTAAKAKPQKIALHSNRAACYLKLHDFIKAAEECTCVLELDQKHSGALMLRAQTLVTLKEYQ 95
Cdd:COG5010  26 KYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKD 105

                        90       100
                ....*....|....*....|...
gi 18405682  96 SALFDVTRLMELNP-DSEVYQNL 117
Cdd:COG5010 106 EAKEYYEKALALSPdNPNAYSNL 128
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 35-125 9.86e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 38.45  E-value: 9.86e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18405682  35 TAAKAKPQKIALHSNRAACYLKLHDFIKAAEECTCVLELDQKHSGALMLRAQTLVTLKEYQSALFDVTRLMELNPDSEVY 114
Cdd:COG4235   8 QALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEA 87

                        90
                ....*....|.
gi 18405682 115 QNLEARLRTQL 125
Cdd:COG4235  88 LYLLGLAAFQQ 98
TPR_12 pfam13424
Tetratricopeptide repeat;
6-76 1.32e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 36.60  E-value: 1.32e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 18405682     6 TASGKVEKGHQLYRDGKYKEALLFYTEALTAAKA-----KPQKIALHSNRAACYLKLHDFIKAAEECTCVLELDQK 76
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
53-125 2.44e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 36.30  E-value: 2.44e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 18405682  53 CYLKLHDFIKAAEECTCVLELDQKHSGALMLRAQTLVTLKEYQSALfDVTRLMELNPDSEVYQNLEARLRTQL 125
Cdd:COG3063   1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLEL 72
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 16-122 3.02e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 36.51  E-value: 3.02e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18405682  16 QLYRDGKYKEALLFYTEALTAAKAKPQKIALHSNRAACYLKLHDFIKAAEECTCVLELDQKHS---GALMLRAQTLVTLK 92
Cdd:COG1729   2 ALLKAGDYDEAIAAFKAFLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELG 81

                        90       100       110
                ....*....|....*....|....*....|
gi 18405682  93 EYQSALFDVTRLMELNPDSEVYQNLEARLR 122
Cdd:COG1729  82 DYDKARATLEELIKKYPDSEAAKEARARLA 111
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 47-77 7.36e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 33.57  E-value: 7.36e-03
                           10        20        30
                   ....*....|....*....|....*....|.
gi 18405682     47 HSNRAACYLKLHDFIKAAEECTCVLELDQKH 77
Cdd:smart00028   4 LYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 14-112 7.38e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 37.76  E-value: 7.38e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18405682    14 GHQLYRDGKYKEALLFYTEALTAAKAKPQKIALHSNRAACYLKLHDFIKAAEEctcVLELDQKHSGALMLRAQTLVTLKE 93
Cdd:TIGR02917 132 GLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDE---VLTADPGNVDALLLKGDLLLSLGN 208

                          90
                  ....*....|....*....
gi 18405682    94 YQSALFDVTRLMELNPDSE 112
Cdd:TIGR02917 209 IELALAAYRKAIALRPNNI 227
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 19-121 9.62e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 37.37  E-value: 9.62e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18405682    19 RDGKYKEALLFYTEALTAAKAKPQKIALhsnRAACYLKLHDFIKAAEECTCVLELDQKHSGALMLRAQTLVTLKEYQSAL 98
Cdd:TIGR02917 579 GKGQLKKALAILNEAADAAPDSPEAWLM---LGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAI 655

                          90       100
                  ....*....|....*....|...
gi 18405682    99 FDVTRLMELNPDSEVYQNLEARL 121
Cdd:TIGR02917 656 TSLKRALELKPDNTEAQIGLAQL 678
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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