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Conserved domains on  [gi|18405887|ref|NP_564720|]
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plant/protein (Protein of unknown function, DUF538) [Arabidopsis thaliana]

Protein Classification

DUF538 domain-containing protein( domain architecture ID 10516452)

DUF538 domain-containing protein similar to Arabidopsis thaliana At5g01610

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF538 pfam04398
Protein of unknown function, DUF538; This family consists of several plant proteins of unknown ...
 27-138 8.69e-37

Protein of unknown function, DUF538; This family consists of several plant proteins of unknown function.


:

Pssm-ID: 461290  Cd Length: 109  Bit Score: 122.57  E-value: 8.69e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18405887    27 EFLKEVSMPNGLLPlKDIEEVGYDRETGIVWLKQKKSITHKFEAIGKLVSYATEVIAQVEVGKIKKLTGVKAKELLIWVT 106
Cdd:pfam04398   2 ELLEEYGLPRGLLP-KGVTEYGLNEETGFFWVYLKGPCEFEHTEIGYLVRYDTEVTGYLSKGKIKKLEGVKVKELFLWVP 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 18405887   107 LNELVLEQptSSGKINFRtpTG-LSRTFPVSAF 138
Cdd:pfam04398  81 VTEISVDP--SGDKITFK--VGvLSKSFPVSAF 109
 
Name Accession Description Interval E-value
DUF538 pfam04398
Protein of unknown function, DUF538; This family consists of several plant proteins of unknown ...
 27-138 8.69e-37

Protein of unknown function, DUF538; This family consists of several plant proteins of unknown function.


Pssm-ID: 461290  Cd Length: 109  Bit Score: 122.57  E-value: 8.69e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18405887    27 EFLKEVSMPNGLLPlKDIEEVGYDRETGIVWLKQKKSITHKFEAIGKLVSYATEVIAQVEVGKIKKLTGVKAKELLIWVT 106
Cdd:pfam04398   2 ELLEEYGLPRGLLP-KGVTEYGLNEETGFFWVYLKGPCEFEHTEIGYLVRYDTEVTGYLSKGKIKKLEGVKVKELFLWVP 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 18405887   107 LNELVLEQptSSGKINFRtpTG-LSRTFPVSAF 138
Cdd:pfam04398  81 VTEISVDP--SGDKITFK--VGvLSKSFPVSAF 109
 
Name Accession Description Interval E-value
DUF538 pfam04398
Protein of unknown function, DUF538; This family consists of several plant proteins of unknown ...
 27-138 8.69e-37

Protein of unknown function, DUF538; This family consists of several plant proteins of unknown function.


Pssm-ID: 461290  Cd Length: 109  Bit Score: 122.57  E-value: 8.69e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18405887    27 EFLKEVSMPNGLLPlKDIEEVGYDRETGIVWLKQKKSITHKFEAIGKLVSYATEVIAQVEVGKIKKLTGVKAKELLIWVT 106
Cdd:pfam04398   2 ELLEEYGLPRGLLP-KGVTEYGLNEETGFFWVYLKGPCEFEHTEIGYLVRYDTEVTGYLSKGKIKKLEGVKVKELFLWVP 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 18405887   107 LNELVLEQptSSGKINFRtpTG-LSRTFPVSAF 138
Cdd:pfam04398  81 VTEISVDP--SGDKITFK--VGvLSKSFPVSAF 109
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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