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Conserved domains on  [gi|18408686|ref|NP_564889|]
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abscisic acid (aba)-deficient 4 [Arabidopsis thaliana]

Protein Classification

ABA4-like family protein( domain architecture ID 10624201)

ABA4-like family protein is a DUF4281 domain-containing protein; similar to Arabidopsis thaliana chloroplastic abscisic acid (ABA)-deficient 4 protein (ABA4), which is required for neoxanthin biosynthesis, an intermediary step in abscisic acid (ABA) biosynthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ABA4-like pfam14108
ABA DEFICIENT 4-like; This family of proteins is found in bacteria and plants. It includes ...
 80-208 1.58e-44

ABA DEFICIENT 4-like; This family of proteins is found in bacteria and plants. It includes abscisic acid (ABA)-deficient 4 protein (ABA4) from Arabidopsis thaliana, which has a role in neoxanthin synthesis and may be important for the de novo ABA synthesis specifically during dehydration.


:

Pssm-ID: 433722  Cd Length: 127  Bit Score: 145.07  E-value: 1.58e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18408686    80 SVFAVGTTAVLPFYTLMVVAPKAEITKKCMESSVPYIILGVLYVYLLYISWTPETLKYM-FSSkymlpeLSGIAKMFSSE 158
Cdd:pfam14108   1 LLFTLANLLVLPFWLLMILAPRWRVTRRIMESPLPFLPLALVYLYLWVAPLLGELAPAVsFPS------LAGIASLFSNP 74

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 18408686   159 MTLASAWIHLLVVDLFAARQVYNDGLENQI---ETRHSVSLCLLFCPVGIVSH 208
Cdd:pfam14108  75 EAAAAGWVHFLAFDLFVGRWIYLDGLRRGIprlLTAPSLLLTLFFGPLGLLLY 127
 
Name Accession Description Interval E-value
ABA4-like pfam14108
ABA DEFICIENT 4-like; This family of proteins is found in bacteria and plants. It includes ...
 80-208 1.58e-44

ABA DEFICIENT 4-like; This family of proteins is found in bacteria and plants. It includes abscisic acid (ABA)-deficient 4 protein (ABA4) from Arabidopsis thaliana, which has a role in neoxanthin synthesis and may be important for the de novo ABA synthesis specifically during dehydration.


Pssm-ID: 433722  Cd Length: 127  Bit Score: 145.07  E-value: 1.58e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18408686    80 SVFAVGTTAVLPFYTLMVVAPKAEITKKCMESSVPYIILGVLYVYLLYISWTPETLKYM-FSSkymlpeLSGIAKMFSSE 158
Cdd:pfam14108   1 LLFTLANLLVLPFWLLMILAPRWRVTRRIMESPLPFLPLALVYLYLWVAPLLGELAPAVsFPS------LAGIASLFSNP 74

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 18408686   159 MTLASAWIHLLVVDLFAARQVYNDGLENQI---ETRHSVSLCLLFCPVGIVSH 208
Cdd:pfam14108  75 EAAAAGWVHFLAFDLFVGRWIYLDGLRRGIprlLTAPSLLLTLFFGPLGLLLY 127
 
Name Accession Description Interval E-value
ABA4-like pfam14108
ABA DEFICIENT 4-like; This family of proteins is found in bacteria and plants. It includes ...
 80-208 1.58e-44

ABA DEFICIENT 4-like; This family of proteins is found in bacteria and plants. It includes abscisic acid (ABA)-deficient 4 protein (ABA4) from Arabidopsis thaliana, which has a role in neoxanthin synthesis and may be important for the de novo ABA synthesis specifically during dehydration.


Pssm-ID: 433722  Cd Length: 127  Bit Score: 145.07  E-value: 1.58e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18408686    80 SVFAVGTTAVLPFYTLMVVAPKAEITKKCMESSVPYIILGVLYVYLLYISWTPETLKYM-FSSkymlpeLSGIAKMFSSE 158
Cdd:pfam14108   1 LLFTLANLLVLPFWLLMILAPRWRVTRRIMESPLPFLPLALVYLYLWVAPLLGELAPAVsFPS------LAGIASLFSNP 74

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 18408686   159 MTLASAWIHLLVVDLFAARQVYNDGLENQI---ETRHSVSLCLLFCPVGIVSH 208
Cdd:pfam14108  75 EAAAAGWVHFLAFDLFVGRWIYLDGLRRGIprlLTAPSLLLTLFFGPLGLLLY 127
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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