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Conserved domains on  [gi|18400896|ref|NP_565602|]
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DNA-binding storekeeper protein-related transcriptional regulator [Arabidopsis thaliana]

Protein Classification

GeBP family protein( domain architecture ID 10517430)

GLABROUS1 enhancer-binding protein (GeBP) family protein is a DUF573 domain-containing protein similar to GeBP and GeBP-like proteins that are noncanonical leucine-zipper transcription factors that regulate cytokinin responses in Arabidopsis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF573 pfam04504
Protein of unknown function, DUF573;
67-159 5.02e-37

Protein of unknown function, DUF573;


:

Pssm-ID: 461335  Cd Length: 95  Bit Score: 129.29  E-value: 5.02e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400896    67 RIWNEEDELSILKGLVDYRAKTGFNPKIDWDAFYSFLGSSIVAKFSKEQVLSKIRKLKRRFHVHWEKISEGNDPKFTRSS 146
Cdd:pfam04504   3 RLWSEEDEIVILQGLIDFRSKTGTSPYPDMDAFYEFVKGSLSFDVSKNQLVEKIRRLKKKYENNAKKIKKGKDPSFSKPH 82

                          90
                  ....*....|...
gi 18400896   147 DSEAFGFSSMIWG 159
Cdd:pfam04504  83 DQKCFELSKKIWG 95
 
Name Accession Description Interval E-value
DUF573 pfam04504
Protein of unknown function, DUF573;
67-159 5.02e-37

Protein of unknown function, DUF573;


Pssm-ID: 461335  Cd Length: 95  Bit Score: 129.29  E-value: 5.02e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400896    67 RIWNEEDELSILKGLVDYRAKTGFNPKIDWDAFYSFLGSSIVAKFSKEQVLSKIRKLKRRFHVHWEKISEGNDPKFTRSS 146
Cdd:pfam04504   3 RLWSEEDEIVILQGLIDFRSKTGTSPYPDMDAFYEFVKGSLSFDVSKNQLVEKIRRLKKKYENNAKKIKKGKDPSFSKPH 82

                          90
                  ....*....|...
gi 18400896   147 DSEAFGFSSMIWG 159
Cdd:pfam04504  83 DQKCFELSKKIWG 95
 
Name Accession Description Interval E-value
DUF573 pfam04504
Protein of unknown function, DUF573;
67-159 5.02e-37

Protein of unknown function, DUF573;


Pssm-ID: 461335  Cd Length: 95  Bit Score: 129.29  E-value: 5.02e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400896    67 RIWNEEDELSILKGLVDYRAKTGFNPKIDWDAFYSFLGSSIVAKFSKEQVLSKIRKLKRRFHVHWEKISEGNDPKFTRSS 146
Cdd:pfam04504   3 RLWSEEDEIVILQGLIDFRSKTGTSPYPDMDAFYEFVKGSLSFDVSKNQLVEKIRRLKKKYENNAKKIKKGKDPSFSKPH 82

                          90
                  ....*....|...
gi 18400896   147 DSEAFGFSSMIWG 159
Cdd:pfam04504  83 DQKCFELSKKIWG 95
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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