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Conserved domains on  [gi|18402578|ref|NP_565716|]
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LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) [Arabidopsis thaliana]

Protein Classification

ALOG family protein( domain architecture ID 10522068)

ALOG (Arabidopsis LSH1 and Oryza G1) family protein is a DUF640 domain-containing protein that acts as a plant homeotic and developmental regulator

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ALOG_dom pfam04852
ALOG domain; The 125-residue ALOG (Arabidopsis LSH1 and oryza G1) domain is rich in basic ...
 54-167 1.24e-78

ALOG domain; The 125-residue ALOG (Arabidopsis LSH1 and oryza G1) domain is rich in basic amino acids, especially arginine, and is highly conserved among land plants. Members of the ALOG family of proteins function as key developmental regulators. It has been proposed that the ALOG domain originated from the N-terminal DNA-binding domains of integrases belonging to the tyrosine recombinase superfamily encoded by a distinct type of DIRS1-like LTR retrotransposon found in several eukaryotes. Secondary structure predictions revealed an all-alpha helical domain with four conserved helices. Some proteins known to contain an ALOG domain are Arabidopsis thaliana LIGHT_DEPENDENT SHORT HYPOCOTYLS1 (LSH1),involved in phytochrome- dependent light signalling; Oryza G1, involved in the specification of sterile lemma identity and Plant defence proteins.


:

Pssm-ID: 398493  Cd Length: 126  Bit Score: 231.51  E-value: 1.24e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18402578    54 RYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDAL 133
Cdd:pfam04852  13 RYESQKRRDWNTFCQYLRNHRPPLNLSRCSGAHVLEFLRYLDQFGKTKVHIPGCPFFGQPNPPAPCTCPLRQAWGSLDAL 92

                          90       100       110
                  ....*....|....*....|....*....|....
gi 18402578   134 IGRLRAAFEENGGKPETNPFGARAVRLYLREVRD 167
Cdd:pfam04852  93 IGRLRAAFEENGGLPESNPFAARAVRIYLREVRD 126
 
Name Accession Description Interval E-value
ALOG_dom pfam04852
ALOG domain; The 125-residue ALOG (Arabidopsis LSH1 and oryza G1) domain is rich in basic ...
 54-167 1.24e-78

ALOG domain; The 125-residue ALOG (Arabidopsis LSH1 and oryza G1) domain is rich in basic amino acids, especially arginine, and is highly conserved among land plants. Members of the ALOG family of proteins function as key developmental regulators. It has been proposed that the ALOG domain originated from the N-terminal DNA-binding domains of integrases belonging to the tyrosine recombinase superfamily encoded by a distinct type of DIRS1-like LTR retrotransposon found in several eukaryotes. Secondary structure predictions revealed an all-alpha helical domain with four conserved helices. Some proteins known to contain an ALOG domain are Arabidopsis thaliana LIGHT_DEPENDENT SHORT HYPOCOTYLS1 (LSH1),involved in phytochrome- dependent light signalling; Oryza G1, involved in the specification of sterile lemma identity and Plant defence proteins.


Pssm-ID: 398493  Cd Length: 126  Bit Score: 231.51  E-value: 1.24e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18402578    54 RYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDAL 133
Cdd:pfam04852  13 RYESQKRRDWNTFCQYLRNHRPPLNLSRCSGAHVLEFLRYLDQFGKTKVHIPGCPFFGQPNPPAPCTCPLRQAWGSLDAL 92

                          90       100       110
                  ....*....|....*....|....*....|....
gi 18402578   134 IGRLRAAFEENGGKPETNPFGARAVRLYLREVRD 167
Cdd:pfam04852  93 IGRLRAAFEENGGLPESNPFAARAVRIYLREVRD 126
 
Name Accession Description Interval E-value
ALOG_dom pfam04852
ALOG domain; The 125-residue ALOG (Arabidopsis LSH1 and oryza G1) domain is rich in basic ...
 54-167 1.24e-78

ALOG domain; The 125-residue ALOG (Arabidopsis LSH1 and oryza G1) domain is rich in basic amino acids, especially arginine, and is highly conserved among land plants. Members of the ALOG family of proteins function as key developmental regulators. It has been proposed that the ALOG domain originated from the N-terminal DNA-binding domains of integrases belonging to the tyrosine recombinase superfamily encoded by a distinct type of DIRS1-like LTR retrotransposon found in several eukaryotes. Secondary structure predictions revealed an all-alpha helical domain with four conserved helices. Some proteins known to contain an ALOG domain are Arabidopsis thaliana LIGHT_DEPENDENT SHORT HYPOCOTYLS1 (LSH1),involved in phytochrome- dependent light signalling; Oryza G1, involved in the specification of sterile lemma identity and Plant defence proteins.


Pssm-ID: 398493  Cd Length: 126  Bit Score: 231.51  E-value: 1.24e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18402578    54 RYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDAL 133
Cdd:pfam04852  13 RYESQKRRDWNTFCQYLRNHRPPLNLSRCSGAHVLEFLRYLDQFGKTKVHIPGCPFFGQPNPPAPCTCPLRQAWGSLDAL 92

                          90       100       110
                  ....*....|....*....|....*....|....
gi 18402578   134 IGRLRAAFEENGGKPETNPFGARAVRLYLREVRD 167
Cdd:pfam04852  93 IGRLRAAFEENGGLPESNPFAARAVRIYLREVRD 126
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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