NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|18404326|ref|NP_565859|]
View 

S1FA-like DNA-binding protein [Arabidopsis thaliana]

Protein Classification

S1FA domain-containing protein( domain architecture ID 10520081)

S1FA domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
S1FA pfam04689
DNA binding protein S1FA; S1FA is a DNA-binding protein found in plants that specifically ...
 12-76 9.25e-18

DNA binding protein S1FA; S1FA is a DNA-binding protein found in plants that specifically recognizes the negative promoter element S1F.


:

Pssm-ID: 282535  Cd Length: 66  Bit Score: 69.45  E-value: 9.25e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 18404326   12 VEAKGLNPGLIVLLVIGGLLVTFLIANYVMYMYAQKNLPPRKKKPLSKKKLKREKLKQGVPVPGE 76
Cdd:pfam04689  2 EESKGLNPGLIVLLVVGGLLLTFLVGNYALYVYAQKNLPPRKKKPVSKKKMKREKLKQGVSAPGE 66
 
Name Accession Description Interval E-value
S1FA pfam04689
DNA binding protein S1FA; S1FA is a DNA-binding protein found in plants that specifically ...
 12-76 9.25e-18

DNA binding protein S1FA; S1FA is a DNA-binding protein found in plants that specifically recognizes the negative promoter element S1F.


Pssm-ID: 282535  Cd Length: 66  Bit Score: 69.45  E-value: 9.25e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 18404326   12 VEAKGLNPGLIVLLVIGGLLVTFLIANYVMYMYAQKNLPPRKKKPLSKKKLKREKLKQGVPVPGE 76
Cdd:pfam04689  2 EESKGLNPGLIVLLVVGGLLLTFLVGNYALYVYAQKNLPPRKKKPVSKKKMKREKLKQGVSAPGE 66
PHA03231 PHA03231
glycoprotein BALF4; Provisional
 1-46 1.02e-03

glycoprotein BALF4; Provisional


Pssm-ID: 223014 [Multi-domain]  Cd Length: 829  Bit Score: 35.69  E-value: 1.02e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 18404326    1 MSSDGSAGKAVVE----AKGL-------------NP---GLIVLLVIGGLLVTFLIANYVMYMYAQ 46
Cdd:PHA03231 668 MQGLGAVGKAVGNvvsgVAGAvgsivsgvisflkNPfggLAIGLLVIAVLVAVFLAYRRVRRLRQN 733
 
Name Accession Description Interval E-value
S1FA pfam04689
DNA binding protein S1FA; S1FA is a DNA-binding protein found in plants that specifically ...
 12-76 9.25e-18

DNA binding protein S1FA; S1FA is a DNA-binding protein found in plants that specifically recognizes the negative promoter element S1F.


Pssm-ID: 282535  Cd Length: 66  Bit Score: 69.45  E-value: 9.25e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 18404326   12 VEAKGLNPGLIVLLVIGGLLVTFLIANYVMYMYAQKNLPPRKKKPLSKKKLKREKLKQGVPVPGE 76
Cdd:pfam04689  2 EESKGLNPGLIVLLVVGGLLLTFLVGNYALYVYAQKNLPPRKKKPVSKKKMKREKLKQGVSAPGE 66
PHA03231 PHA03231
glycoprotein BALF4; Provisional
 1-46 1.02e-03

glycoprotein BALF4; Provisional


Pssm-ID: 223014 [Multi-domain]  Cd Length: 829  Bit Score: 35.69  E-value: 1.02e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 18404326    1 MSSDGSAGKAVVE----AKGL-------------NP---GLIVLLVIGGLLVTFLIANYVMYMYAQ 46
Cdd:PHA03231 668 MQGLGAVGKAVGNvvsgVAGAvgsivsgvisflkNPfggLAIGLLVIAVLVAVFLAYRRVRRLRQN 733
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH