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Conserved domains on  [gi|18406661|ref|NP_566030|]
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Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

Protein Classification

pentapeptide repeat-containing protein( domain architecture ID 11442852)

pentapeptide repeat-containing protein (PRP) adopts a beta-helical structure and may have a targeting or structural function

CATH:  2.160.20.10
PubMed:  33925937|9655353

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
94-202 1.20e-20

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


:

Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 84.99  E-value: 1.20e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18406661  94 RGQDLSGKDFSGQTLIrqDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATV 173
Cdd:COG1357  72 SGANLTGADLSGANLA--NLSGANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLSGADL 149

                        90       100
                ....*....|....*....|....*....
gi 18406661 174 TGnTSFKGSNITGADFTDVPLRDDQRVYL 202
Cdd:COG1357 150 SG-ADLSGANLSGANLSGANLANLEGADL 177
 
Name Accession Description Interval E-value
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
94-202 1.20e-20

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 84.99  E-value: 1.20e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18406661  94 RGQDLSGKDFSGQTLIrqDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATV 173
Cdd:COG1357  72 SGANLTGADLSGANLA--NLSGANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLSGADL 149

                        90       100
                ....*....|....*....|....*....
gi 18406661 174 TGnTSFKGSNITGADFTDVPLRDDQRVYL 202
Cdd:COG1357 150 SG-ADLSGANLSGANLSGANLANLEGADL 177
PRK15197 PRK15197
type III secretion system effector PipB;
94-194 7.96e-13

type III secretion system effector PipB;


Pssm-ID: 185119 [Multi-domain]  Cd Length: 291  Bit Score: 66.11  E-value: 7.96e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18406661   94 RGQDLSGKDFSGQTLIRQDfktsiLRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATV 173
Cdd:PRK15197 157 RGVNLAHKDFQGEDLSDID-----ASNADFRETTLSNVNLVGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSGVNL 231

                         90       100
                 ....*....|....*....|.
gi 18406661  174 TGNTSFkgsnitGADFTDVPL 194
Cdd:PRK15197 232 TAAILF------GSDLTDTKL 246
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 136-175 2.12e-09

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 51.19  E-value: 2.12e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 18406661   136 ADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATVTG 175
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGANLSGADLSGANLSG 40
 
Name Accession Description Interval E-value
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
94-202 1.20e-20

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 84.99  E-value: 1.20e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18406661  94 RGQDLSGKDFSGQTLIrqDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATV 173
Cdd:COG1357  72 SGANLTGADLSGANLA--NLSGANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLSGADL 149

                        90       100
                ....*....|....*....|....*....
gi 18406661 174 TGnTSFKGSNITGADFTDVPLRDDQRVYL 202
Cdd:COG1357 150 SG-ADLSGANLSGANLSGANLANLEGADL 177
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
90-196 3.45e-20

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 83.84  E-value: 3.45e-20
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18406661  90 QGVTRGQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEAD--------LRGADFSLANVTKV 161
Cdd:COG1357  28 SGALSGANLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGADLSGANlanlsganLSGANLSGANLRGA 107

                        90       100       110
                ....*....|....*....|....*....|....*....
gi 18406661 162 NLTNANLEGATVTG----NTSFKGSNITGADFTDVPLRD 196
Cdd:COG1357 108 NLSGANLSGADLSGadlsGANLSGADLSGANLSGANLSG 146
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
94-196 1.50e-19

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 82.30  E-value: 1.50e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18406661  94 RGQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLL---GASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEG 170
Cdd:COG1357  52 SGADLSGADLSGANLSGADLSGANLTGADLSGANLAnlsGANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSG 131

                        90       100
                ....*....|....*....|....*.
gi 18406661 171 ATVTGnTSFKGSNITGADFTDVPLRD 196
Cdd:COG1357 132 ADLSG-ANLSGANLSGADLSGADLSG 156
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
94-196 4.56e-19

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 81.14  E-value: 4.56e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18406661  94 RGQDLSGKDFSGQTLIRQDFKTSI----LRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANL- 168
Cdd:COG1357   8 SGADLSGADLSGADLSGANLSGALsganLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGADLSGANLa 87

                        90       100       110
                ....*....|....*....|....*....|
gi 18406661 169 --EGATVTGnTSFKGSNITGADFTDVPLRD 196
Cdd:COG1357  88 nlSGANLSG-ANLSGANLRGANLSGANLSG 116
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
94-196 1.07e-18

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 79.99  E-value: 1.07e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18406661  94 RGQDLSGKDFSGQTLIRQDFK----TSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLE 169
Cdd:COG1357   3 SGADLSGADLSGADLSGADLSganlSGALSGANLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGADLS 82

                        90       100
                ....*....|....*....|....*....
gi 18406661 170 GATVT--GNTSFKGSNITGADFTDVPLRD 196
Cdd:COG1357  83 GANLAnlSGANLSGANLSGANLRGANLSG 111
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
118-202 7.40e-13

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 64.19  E-value: 7.40e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18406661 118 LRQANFKGAKLLGASFFDADLTGADLSEA----DLRGADFSLANVTKVNLTNANLEGATVTG----NTSFKGSNITGADF 189
Cdd:COG1357   2 LSGADLSGADLSGADLSGADLSGANLSGAlsgaNLSGANLSGANLTGANLSGADLSGADLSGanlsGADLSGANLTGADL 81

                        90
                ....*....|...
gi 18406661 190 TDVPLRDDQRVYL 202
Cdd:COG1357  82 SGANLANLSGANL 94
PRK15197 PRK15197
type III secretion system effector PipB;
94-194 7.96e-13

type III secretion system effector PipB;


Pssm-ID: 185119 [Multi-domain]  Cd Length: 291  Bit Score: 66.11  E-value: 7.96e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18406661   94 RGQDLSGKDFSGQTLIRQDfktsiLRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATV 173
Cdd:PRK15197 157 RGVNLAHKDFQGEDLSDID-----ASNADFRETTLSNVNLVGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSGVNL 231

                         90       100
                 ....*....|....*....|.
gi 18406661  174 TGNTSFkgsnitGADFTDVPL 194
Cdd:PRK15197 232 TAAILF------GSDLTDTKL 246
PRK15197 PRK15197
type III secretion system effector PipB;
95-196 1.74e-11

type III secretion system effector PipB;


Pssm-ID: 185119 [Multi-domain]  Cd Length: 291  Bit Score: 62.25  E-value: 1.74e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18406661   95 GQDLSGKDFSGQTL-----IRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLE 169
Cdd:PRK15197 173 DIDASNADFRETTLsnvnlVGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSGVNLTAAILFGSDLTDTKLNGAKLD 252

                         90       100
                 ....*....|....*....|....*..
gi 18406661  170 GATVTGNTSFKGSNITGADFTDVPLRD 196
Cdd:PRK15197 253 KIALTLAKALTGADLTGSQHTPTPLPD 279
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 136-175 2.12e-09

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 51.19  E-value: 2.12e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 18406661   136 ADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATVTG 175
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGANLSGADLSGANLSG 40
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 116-154 3.39e-09

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 50.80  E-value: 3.39e-09
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 18406661   116 SILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFS 154
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGANLSGADLSGANLS 39
PRK15196 PRK15196
type III secretion system effector PipB2;
95-188 3.83e-09

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 55.78  E-value: 3.83e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18406661   95 GQDLSGKDFSGQTLIRQDFKTsilrqANFKGAKLLGASFFD--------------------ADLTGADLSEADLRGADFS 154
Cdd:PRK15196 171 DADLSGANLEGAVLFMADCEG-----ANFKGANLSGTSLGDsnfknacledsimcgatldhANLTGANLQHASLLGCSMI 245

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 18406661  155 LANVTKVNLTNANLEGATVTG----NTSFKGSNITGAD 188
Cdd:PRK15196 246 ECNCSGANMDHTNLSGATLIRadmsGATLQGATIMAAI 283
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 131-170 6.40e-09

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 50.03  E-value: 6.40e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 18406661   131 ASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEG 170
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGANLSGADLSGANLSG 40
PRK15196 PRK15196
type III secretion system effector PipB2;
95-185 2.01e-08

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 53.47  E-value: 2.01e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18406661   95 GQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATVT 174
Cdd:PRK15196 231 GANLQHASLLGCSMIECNCSGANMDHTNLSGATLIRADMSGATLQGATIMAAIMEGAVLTRANLRKASFISTNLDGADLA 310

                         90
                 ....*....|....*
gi 18406661  175 ----GNTSFKGSNIT 185
Cdd:PRK15196 311 eanlNNTCFKDCTLT 325
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 126-165 2.51e-07

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 45.79  E-value: 2.51e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 18406661   126 AKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTN 165
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGANLSGADLSGANLSG 40
PRK15197 PRK15197
type III secretion system effector PipB;
128-194 2.90e-07

type III secretion system effector PipB;


Pssm-ID: 185119 [Multi-domain]  Cd Length: 291  Bit Score: 49.93  E-value: 2.90e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 18406661  128 LLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATVTGNTsFKGSNITGADFTDVPL 194
Cdd:PRK15197 156 LRGVNLAHKDFQGEDLSDIDASNADFRETTLSNVNLVGANLCCANLHAVN-LMGSNMTKANLTHADL 221
Pentapeptide_4 pfam13599
Pentapeptide repeats (9 copies);
107-189 6.22e-07

Pentapeptide repeats (9 copies);


Pssm-ID: 433339 [Multi-domain]  Cd Length: 78  Bit Score: 45.73  E-value: 6.22e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18406661   107 TLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFslanvTKVNLTNANLEGATVTgNTSFKGSNITG 186
Cdd:pfam13599   2 DFTRCSFEGCKLSGTEFYHATLKDCNFTECNLVNVNFDDCNLRDVDF-----LEAQLKNAQFSGCNLK-NSNFSDVKLKG 75


                  ...
gi 18406661   187 ADF 189
Cdd:pfam13599  76 ADF 78
PRK15196 PRK15196
type III secretion system effector PipB2;
95-184 8.65e-07

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 48.85  E-value: 8.65e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18406661   95 GQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGA----------SFFDADLTGADLSEADLRGADFSLANVTKVNLT 164
Cdd:PRK15196 251 GANMDHTNLSGATLIRADMSGATLQGATIMAAIMEGAvltranlrkaSFISTNLDGADLAEANLNNTCFKDCTLTHLRTE 330

                         90       100
                 ....*....|....*....|
gi 18406661  165 NANLEGATVTGNTSFKGSNI 184
Cdd:PRK15196 331 DATMSTSTQTLFNEFYSENI 350
Pentapeptide_4 pfam13599
Pentapeptide repeats (9 copies);
97-172 9.88e-07

Pentapeptide repeats (9 copies);


Pssm-ID: 433339 [Multi-domain]  Cd Length: 78  Bit Score: 45.34  E-value: 9.88e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 18406661    97 DLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGAT 172
Cdd:pfam13599   2 DFTRCSFEGCKLSGTEFYHATLKDCNFTECNLVNVNFDDCNLRDVDFLEAQLKNAQFSGCNLKNSNFSDVKLKGAD 77
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
137-196 9.96e-07

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 47.24  E-value: 9.96e-07
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 18406661 137 DLTGADLSEADLRGADFSLANVTKVNL----TNANLEGATVTG----NTSFKGSNITGADFTDVPLRD 196
Cdd:COG1357   1 DLSGADLSGADLSGADLSGADLSGANLsgalSGANLSGANLSGanltGANLSGADLSGADLSGANLSG 68
PRK15196 PRK15196
type III secretion system effector PipB2;
122-182 1.34e-06

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 48.08  E-value: 1.34e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 18406661  122 NFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATVtGNTSFKGS 182
Cdd:PRK15196 153 NLKGAVLTGANLTAENLCDADLSGANLEGAVLFMADCEGANFKGANLSGTSL-GDSNFKNA 212
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 118-150 5.36e-06

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 41.94  E-value: 5.36e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 18406661   118 LRQANFKGAKLLGASFFDADLTGADLSEADLRG 150
Cdd:pfam00805   8 LSGANLSGANLSGANLTGANLSGADLSGANLSG 40
PRK15196 PRK15196
type III secretion system effector PipB2;
95-195 4.15e-05

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 43.46  E-value: 4.15e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18406661   95 GQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLL-----GASFFDADLTGADLSEADLR----------GADFSLANVT 159
Cdd:PRK15196 151 GMNLKGAVLTGANLTAENLCDADLSGANLEGAVLFmadceGANFKGANLSGTSLGDSNFKnacledsimcGATLDHANLT 230

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 18406661  160 KVNLTNANLEGATVT---------GNTSFKGSNITGADFTDVPLR 195
Cdd:PRK15196 231 GANLQHASLLGCSMIecncsganmDHTNLSGATLIRADMSGATLQ 275
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 108-144 4.68e-04

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 36.55  E-value: 4.68e-04
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 18406661   108 LIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLS 144
Cdd:pfam00805   3 LSGANLSGANLSGANLSGANLTGANLSGADLSGANLS 39
PRK15377 PRK15377
type III secretion system effector HECT-type E3 ubiquitin transferase;
95-185 5.94e-04

type III secretion system effector HECT-type E3 ubiquitin transferase;


Pssm-ID: 185275 [Multi-domain]  Cd Length: 782  Bit Score: 40.43  E-value: 5.94e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18406661   95 GQDLSGKDFSGQTLIRQDFKTSILRQanfkGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATVT 174
Cdd:PRK15377 194 DRDFSNADFRNINFSKINPSGFMLRD----GDIIKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDMN 269

                         90
                 ....*....|.
gi 18406661  175 gNTSFKGSNIT 185
Cdd:PRK15377 270 -EASLKYSITT 279
Pentapeptide_4 pfam13599
Pentapeptide repeats (9 copies);
97-163 3.40e-03

Pentapeptide repeats (9 copies);


Pssm-ID: 433339 [Multi-domain]  Cd Length: 78  Bit Score: 35.33  E-value: 3.40e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 18406661    97 DLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNL 163
Cdd:pfam13599  12 KLSGTEFYHATLKDCNFTECNLVNVNFDDCNLRDVDFLEAQLKNAQFSGCNLKNSNFSDVKLKGADF 78
Pentapeptide_4 pfam13599
Pentapeptide repeats (9 copies);
126-196 3.95e-03

Pentapeptide repeats (9 copies);


Pssm-ID: 433339 [Multi-domain]  Cd Length: 78  Bit Score: 35.33  E-value: 3.95e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 18406661   126 AKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATVTG----NTSFKGSNITGADFTDVPLRD 196
Cdd:pfam13599   1 ADFTRCSFEGCKLSGTEFYHATLKDCNFTECNLVNVNFDDCNLRDVDFLEaqlkNAQFSGCNLKNSNFSDVKLKG 75
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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