NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|18406663|ref|NP_566031|]
View 

Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

Protein Classification

pentapeptide repeat-containing protein( domain architecture ID 11442852)

pentapeptide repeat-containing protein (PRP) adopts a beta-helical structure and may have a targeting or structural function

CATH:  2.160.20.10
PubMed:  33925937|9655353

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
94-171 3.47e-19

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


:

Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 80.76  E-value: 3.47e-19
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 18406663  94 RGQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGA 171
Cdd:COG1357  90 SGANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLSGADLSGADLSGANLSGANLSGA 167
 
Name Accession Description Interval E-value
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
94-171 3.47e-19

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 80.76  E-value: 3.47e-19
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 18406663  94 RGQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGA 171
Cdd:COG1357  90 SGANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLSGADLSGADLSGANLSGANLSGA 167
PRK15197 PRK15197
type III secretion system effector PipB;
94-185 1.64e-11

type III secretion system effector PipB;


Pssm-ID: 185119 [Multi-domain]  Cd Length: 291  Bit Score: 61.87  E-value: 1.64e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18406663   94 RGQDLSGKDFSGQTLIRQDfktsiLRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATV 173
Cdd:PRK15197 157 RGVNLAHKDFQGEDLSDID-----ASNADFRETTLSNVNLVGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSGVNL 231

                         90
                 ....*....|..
gi 18406663  174 TGNTSFkGSNIT 185
Cdd:PRK15197 232 TAAILF-GSDLT 242
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 136-175 1.35e-09

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 51.57  E-value: 1.35e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 18406663   136 ADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATVTG 175
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGANLSGADLSGANLSG 40
 
Name Accession Description Interval E-value
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
94-171 3.47e-19

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 80.76  E-value: 3.47e-19
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 18406663  94 RGQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGA 171
Cdd:COG1357  90 SGANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLSGADLSGADLSGANLSGANLSGA 167
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
94-175 1.07e-18

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 79.60  E-value: 1.07e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18406663  94 RGQDLSG---KDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEG 170
Cdd:COG1357  77 TGADLSGanlANLSGANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLSGADLSGADLSG 156


                ....*
gi 18406663 171 ATVTG 175
Cdd:COG1357 157 ANLSG 161
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
90-187 3.18e-18

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 78.44  E-value: 3.18e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18406663  90 QGVTRGQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEAD--------LRGADFSLANVTKV 161
Cdd:COG1357  28 SGALSGANLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGADLSGANlanlsganLSGANLSGANLRGA 107

                        90       100       110
                ....*....|....*....|....*....|
gi 18406663 162 NLTNANLEGATVTG----NTSFKGSNITGA 187
Cdd:COG1357 108 NLSGANLSGADLSGadlsGANLSGADLSGA 137
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
94-187 9.97e-18

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 76.90  E-value: 9.97e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18406663  94 RGQDLSGKDFSGQTLIRQDFKTSI----LRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANL- 168
Cdd:COG1357   8 SGADLSGADLSGADLSGANLSGALsganLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGADLSGANLa 87

                        90       100
                ....*....|....*....|....*
gi 18406663 169 --EGATVTG----NTSFKGSNITGA 187
Cdd:COG1357  88 nlSGANLSGanlsGANLRGANLSGA 112
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
94-187 2.96e-17

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 75.75  E-value: 2.96e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18406663  94 RGQDLSGKDFSGQTLIRQDFK----TSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLE 169
Cdd:COG1357   3 SGADLSGADLSGADLSGADLSganlSGALSGANLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGADLS 82

                        90
                ....*....|....*...
gi 18406663 170 GATVtgnTSFKGSNITGA 187
Cdd:COG1357  83 GANL---ANLSGANLSGA 97
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
94-174 4.75e-16

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 72.67  E-value: 4.75e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18406663  94 RGQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLtnANLEGATV 173
Cdd:COG1357 100 SGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLSGADLSGADLSGANLSGANLSGANL--ANLEGADL 177


                .
gi 18406663 174 T 174
Cdd:COG1357 178 K 178
PRK15197 PRK15197
type III secretion system effector PipB;
94-185 1.64e-11

type III secretion system effector PipB;


Pssm-ID: 185119 [Multi-domain]  Cd Length: 291  Bit Score: 61.87  E-value: 1.64e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18406663   94 RGQDLSGKDFSGQTLIRQDfktsiLRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATV 173
Cdd:PRK15197 157 RGVNLAHKDFQGEDLSDID-----ASNADFRETTLSNVNLVGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSGVNL 231

                         90
                 ....*....|..
gi 18406663  174 TGNTSFkGSNIT 185
Cdd:PRK15197 232 TAAILF-GSDLT 242
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
118-187 4.56e-11

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 59.18  E-value: 4.56e-11
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 18406663 118 LRQANFKGAKLLGASFFDADLTGADLSEA----DLRGADFSLANVTKVNLTNANLEGATVTG----NTSFKGSNITGA 187
Cdd:COG1357   2 LSGADLSGADLSGADLSGADLSGANLSGAlsgaNLSGANLSGANLTGANLSGADLSGADLSGanlsGADLSGANLTGA 79
PRK15197 PRK15197
type III secretion system effector PipB;
94-187 1.46e-10

type III secretion system effector PipB;


Pssm-ID: 185119 [Multi-domain]  Cd Length: 291  Bit Score: 59.17  E-value: 1.46e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18406663   94 RGQDLSGKDFSGqtlirQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLT--------- 164
Cdd:PRK15197 167 QGEDLSDIDASN-----ADFRETTLSNVNLVGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSGVNLTaailfgsdl 241

                         90       100
                 ....*....|....*....|....*....
gi 18406663  165 ------NANLEGATVTGNTSFKGSNITGA 187
Cdd:PRK15197 242 tdtklnGAKLDKIALTLAKALTGADLTGS 270
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 136-175 1.35e-09

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 51.57  E-value: 1.35e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 18406663   136 ADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATVTG 175
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGANLSGADLSGANLSG 40
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 116-154 2.19e-09

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 51.19  E-value: 2.19e-09
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 18406663   116 SILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFS 154
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGANLSGADLSGANLS 39
PRK15196 PRK15196
type III secretion system effector PipB2;
95-187 3.43e-09

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 55.40  E-value: 3.43e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18406663   95 GQDLSGKDFSGQTLIRQDFKTsilrqANFKGAKLLGASFFD--------------------ADLTGADLSEADLRGADFS 154
Cdd:PRK15196 171 DADLSGANLEGAVLFMADCEG-----ANFKGANLSGTSLGDsnfknacledsimcgatldhANLTGANLQHASLLGCSMI 245

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 18406663  155 LANVTKVNLTNANLEGATVTG----NTSFKGSNITGA 187
Cdd:PRK15196 246 ECNCSGANMDHTNLSGATLIRadmsGATLQGATIMAA 282
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 131-170 4.10e-09

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 50.42  E-value: 4.10e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 18406663   131 ASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEG 170
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGANLSGADLSGANLSG 40
PRK15196 PRK15196
type III secretion system effector PipB2;
95-185 9.59e-09

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 54.24  E-value: 9.59e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18406663   95 GQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATVT 174
Cdd:PRK15196 231 GANLQHASLLGCSMIECNCSGANMDHTNLSGATLIRADMSGATLQGATIMAAIMEGAVLTRANLRKASFISTNLDGADLA 310

                         90
                 ....*....|....*
gi 18406663  175 ----GNTSFKGSNIT 185
Cdd:PRK15196 311 eanlNNTCFKDCTLT 325
PRK15196 PRK15196
type III secretion system effector PipB2;
122-208 1.13e-07

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 51.16  E-value: 1.13e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18406663  122 NFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATVtGNTSFKG-----SNITGAGEKRKENFH 196
Cdd:PRK15196 153 NLKGAVLTGANLTAENLCDADLSGANLEGAVLFMADCEGANFKGANLSGTSL-GDSNFKNacledSIMCGATLDHANLTG 231

                         90
                 ....*....|..
gi 18406663  197 NNNKHISLLPLS 208
Cdd:PRK15196 232 ANLQHASLLGCS 243
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 126-165 1.75e-07

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 46.18  E-value: 1.75e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 18406663   126 AKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTN 165
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGANLSGADLSGANLSG 40
PRK15196 PRK15196
type III secretion system effector PipB2;
95-184 4.12e-07

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 49.23  E-value: 4.12e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18406663   95 GQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGA----------SFFDADLTGADLSEADLRGADFSLANVTKVNLT 164
Cdd:PRK15196 251 GANMDHTNLSGATLIRADMSGATLQGATIMAAIMEGAvltranlrkaSFISTNLDGADLAEANLNNTCFKDCTLTHLRTE 330

                         90       100
                 ....*....|....*....|
gi 18406663  165 NANLEGATVTGNTSFKGSNI 184
Cdd:PRK15196 331 DATMSTSTQTLFNEFYSENI 350
Pentapeptide_4 pfam13599
Pentapeptide repeats (9 copies);
97-172 1.03e-06

Pentapeptide repeats (9 copies);


Pssm-ID: 433339 [Multi-domain]  Cd Length: 78  Bit Score: 44.96  E-value: 1.03e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 18406663    97 DLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGAT 172
Cdd:pfam13599   2 DFTRCSFEGCKLSGTEFYHATLKDCNFTECNLVNVNFDDCNLRDVDFLEAQLKNAQFSGCNLKNSNFSDVKLKGAD 77
PRK15197 PRK15197
type III secretion system effector PipB;
128-204 2.89e-06

type III secretion system effector PipB;


Pssm-ID: 185119 [Multi-domain]  Cd Length: 291  Bit Score: 46.85  E-value: 2.89e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 18406663  128 LLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATVTGNTsFKGSNITGAGEKRKENFHNNNKHISL 204
Cdd:PRK15197 156 LRGVNLAHKDFQGEDLSDIDASNADFRETTLSNVNLVGANLCCANLHAVN-LMGSNMTKANLTHADLTCANMSGVNL 231
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 118-150 3.87e-06

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 42.33  E-value: 3.87e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 18406663   118 LRQANFKGAKLLGASFFDADLTGADLSEADLRG 150
Cdd:pfam00805   8 LSGANLSGANLSGANLTGANLSGADLSGANLSG 40
Pentapeptide_4 pfam13599
Pentapeptide repeats (9 copies);
107-187 2.85e-05

Pentapeptide repeats (9 copies);


Pssm-ID: 433339 [Multi-domain]  Cd Length: 78  Bit Score: 41.11  E-value: 2.85e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18406663   107 TLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFslanvTKVNLTNANLEGATVTgNTSFKGSNITG 186
Cdd:pfam13599   2 DFTRCSFEGCKLSGTEFYHATLKDCNFTECNLVNVNFDDCNLRDVDF-----LEAQLKNAQFSGCNLK-NSNFSDVKLKG 75


                  .
gi 18406663   187 A 187
Cdd:pfam13599  76 A 76
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
137-187 3.02e-05

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 43.01  E-value: 3.02e-05
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 18406663 137 DLTGADLSEADLRGADFSLANVTKVNL----TNANLEGATVTG----NTSFKGSNITGA 187
Cdd:COG1357   1 DLSGADLSGADLSGADLSGADLSGANLsgalSGANLSGANLSGanltGANLSGADLSGA 59
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 108-144 3.56e-04

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 36.93  E-value: 3.56e-04
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 18406663   108 LIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLS 144
Cdd:pfam00805   3 LSGANLSGANLSGANLSGANLTGANLSGADLSGANLS 39
Pentapeptide_4 pfam13599
Pentapeptide repeats (9 copies);
116-184 7.11e-04

Pentapeptide repeats (9 copies);


Pssm-ID: 433339 [Multi-domain]  Cd Length: 78  Bit Score: 37.25  E-value: 7.11e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 18406663   116 SILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATVTGNTsFKGSNI 184
Cdd:pfam13599   1 ADFTRCSFEGCKLSGTEFYHATLKDCNFTECNLVNVNFDDCNLRDVDFLEAQLKNAQFSGCN-LKNSNF 68
Pentapeptide_4 pfam13599
Pentapeptide repeats (9 copies);
97-163 3.62e-03

Pentapeptide repeats (9 copies);


Pssm-ID: 433339 [Multi-domain]  Cd Length: 78  Bit Score: 35.33  E-value: 3.62e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 18406663    97 DLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNL 163
Cdd:pfam13599  12 KLSGTEFYHATLKDCNFTECNLVNVNFDDCNLRDVDFLEAQLKNAQFSGCNLKNSNFSDVKLKGADF 78
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH