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Conserved domains on  [gi|18396229|ref|NP_566175|]
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LOB domain-containing protein 41 [Arabidopsis thaliana]

Protein Classification

LOB domain-containing protein( domain architecture ID 10505015)

LOB (Lateral Organ Boundaries) domain-containing protein plays a potential role in lateral organ development of plants

PubMed:  12068116

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LOB pfam03195
Lateral organ boundaries (LOB) domain; The lateral organ boundaries (LOB) gene encodes a ...
 4-107 7.66e-35

Lateral organ boundaries (LOB) domain; The lateral organ boundaries (LOB) gene encodes a plant-specific protein of unknown function that is expressed at the adaxial base of initiating lateral organs. The N-terminal of the LOB protein contains an approximately 100-amino acid conserved domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins as well as in proteins from a variety of other plant species. The LOB domain contains conserved blocks of amino acids that identify the LOB domain (LBD) gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is the defining feature of the LOB domain, is present in all LBD proteins.


:

Pssm-ID: 460843  Cd Length: 99  Bit Score: 120.68  E-value: 7.66e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18396229     4 SCNGCRVLRKGCSEDCSIRPCLawiksPEAQANATVFLAKFYGRAGLMNLINAGPNHLRPGIFRSLLHEACGRIVNPIYG 83
Cdd:pfam03195   1 PCAACKYLRRKCTPDCILAPYF-----PADQPEKFANVHKVFGASNVIKLLKELPPEQRADAVKSLIYEANARLRDPVYG 75

                          90       100
                  ....*....|....*....|....
gi 18396229    84 SVGLLWSGNWQLCQDAVEAVMKGE 107
Cdd:pfam03195  76 CVGIISALQQQLAQLQAELALAQA 99
PTZ00233 super family cl11955
variable surface protein Vir18; Provisional
 142-260 2.79e-04

variable surface protein Vir18; Provisional


The actual alignment was detected with superfamily member PTZ00233:

Pssm-ID: 240323 [Multi-domain]  Cd Length: 509  Bit Score: 41.88  E-value: 2.79e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18396229  142 AATGSTDLKLAKTRRAKRVSTVAIQAESEGKSDEASHDSSLSHQSEIVAAHEGESKESESNVSEVLAFSPPAVKGSGEIK 221
Cdd:PTZ00233 287 IEVQTHGDKDIITEAADNLSSLEGTPGSVQLADEDSVDTDTDRGSTGAVASDPENTGTEETSSESLVSAPSGDVSNGGIT 366

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 18396229  222 L-DLTLRLEPVSRAYHVVPVKK-RRIGVFGTCQkESTCKTE 260
Cdd:PTZ00233 367 EvDISNDDKAVDGESNGVEISHdQEHDSETICN-ESTCREE 406
 
Name Accession Description Interval E-value
LOB pfam03195
Lateral organ boundaries (LOB) domain; The lateral organ boundaries (LOB) gene encodes a ...
 4-107 7.66e-35

Lateral organ boundaries (LOB) domain; The lateral organ boundaries (LOB) gene encodes a plant-specific protein of unknown function that is expressed at the adaxial base of initiating lateral organs. The N-terminal of the LOB protein contains an approximately 100-amino acid conserved domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins as well as in proteins from a variety of other plant species. The LOB domain contains conserved blocks of amino acids that identify the LOB domain (LBD) gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is the defining feature of the LOB domain, is present in all LBD proteins.


Pssm-ID: 460843  Cd Length: 99  Bit Score: 120.68  E-value: 7.66e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18396229     4 SCNGCRVLRKGCSEDCSIRPCLawiksPEAQANATVFLAKFYGRAGLMNLINAGPNHLRPGIFRSLLHEACGRIVNPIYG 83
Cdd:pfam03195   1 PCAACKYLRRKCTPDCILAPYF-----PADQPEKFANVHKVFGASNVIKLLKELPPEQRADAVKSLIYEANARLRDPVYG 75

                          90       100
                  ....*....|....*....|....
gi 18396229    84 SVGLLWSGNWQLCQDAVEAVMKGE 107
Cdd:pfam03195  76 CVGIISALQQQLAQLQAELALAQA 99
PTZ00233 PTZ00233
variable surface protein Vir18; Provisional
 142-260 2.79e-04

variable surface protein Vir18; Provisional


Pssm-ID: 240323 [Multi-domain]  Cd Length: 509  Bit Score: 41.88  E-value: 2.79e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18396229  142 AATGSTDLKLAKTRRAKRVSTVAIQAESEGKSDEASHDSSLSHQSEIVAAHEGESKESESNVSEVLAFSPPAVKGSGEIK 221
Cdd:PTZ00233 287 IEVQTHGDKDIITEAADNLSSLEGTPGSVQLADEDSVDTDTDRGSTGAVASDPENTGTEETSSESLVSAPSGDVSNGGIT 366

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 18396229  222 L-DLTLRLEPVSRAYHVVPVKK-RRIGVFGTCQkESTCKTE 260
Cdd:PTZ00233 367 EvDISNDDKAVDGESNGVEISHdQEHDSETICN-ESTCREE 406
 
Name Accession Description Interval E-value
LOB pfam03195
Lateral organ boundaries (LOB) domain; The lateral organ boundaries (LOB) gene encodes a ...
 4-107 7.66e-35

Lateral organ boundaries (LOB) domain; The lateral organ boundaries (LOB) gene encodes a plant-specific protein of unknown function that is expressed at the adaxial base of initiating lateral organs. The N-terminal of the LOB protein contains an approximately 100-amino acid conserved domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins as well as in proteins from a variety of other plant species. The LOB domain contains conserved blocks of amino acids that identify the LOB domain (LBD) gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is the defining feature of the LOB domain, is present in all LBD proteins.


Pssm-ID: 460843  Cd Length: 99  Bit Score: 120.68  E-value: 7.66e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18396229     4 SCNGCRVLRKGCSEDCSIRPCLawiksPEAQANATVFLAKFYGRAGLMNLINAGPNHLRPGIFRSLLHEACGRIVNPIYG 83
Cdd:pfam03195   1 PCAACKYLRRKCTPDCILAPYF-----PADQPEKFANVHKVFGASNVIKLLKELPPEQRADAVKSLIYEANARLRDPVYG 75

                          90       100
                  ....*....|....*....|....
gi 18396229    84 SVGLLWSGNWQLCQDAVEAVMKGE 107
Cdd:pfam03195  76 CVGIISALQQQLAQLQAELALAQA 99
PTZ00233 PTZ00233
variable surface protein Vir18; Provisional
 142-260 2.79e-04

variable surface protein Vir18; Provisional


Pssm-ID: 240323 [Multi-domain]  Cd Length: 509  Bit Score: 41.88  E-value: 2.79e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18396229  142 AATGSTDLKLAKTRRAKRVSTVAIQAESEGKSDEASHDSSLSHQSEIVAAHEGESKESESNVSEVLAFSPPAVKGSGEIK 221
Cdd:PTZ00233 287 IEVQTHGDKDIITEAADNLSSLEGTPGSVQLADEDSVDTDTDRGSTGAVASDPENTGTEETSSESLVSAPSGDVSNGGIT 366

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 18396229  222 L-DLTLRLEPVSRAYHVVPVKK-RRIGVFGTCQkESTCKTE 260
Cdd:PTZ00233 367 EvDISNDDKAVDGESNGVEISHdQEHDSETICN-ESTCREE 406
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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