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Conserved domains on  [gi|18397783|ref|NP_566296|]
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pigment defective 320 [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3769 super family cl13975
Protein of unknown function (DUF3769); This family of proteins is found in bacteria and ...
 345-430 1.08e-03

Protein of unknown function (DUF3769); This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 560 and 931 amino acids in length.


The actual alignment was detected with superfamily member pfam12600:

Pssm-ID: 432661  Cd Length: 443  Bit Score: 41.43  E-value: 1.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18397783   345 GRASLTAQYGNFQKFFFDLTRFhaRLDFPHGLRflTGATSVAQDLLNSRQpsleafqkicpeVL-VSLQQQIVGPFSFKV 423
Cdd:pfam12600 333 GTVGLQGQLGHFSRPFLDYTGF--NISYSQGLK--SGESPFLFDRIVDLK------------VLsAGLTQQIYGPLRLGV 396


                  ....*..
gi 18397783   424 ESGIEID 430
Cdd:pfam12600 397 QTSINLD 403
 
Name Accession Description Interval E-value
DUF3769 pfam12600
Protein of unknown function (DUF3769); This family of proteins is found in bacteria and ...
 345-430 1.08e-03

Protein of unknown function (DUF3769); This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 560 and 931 amino acids in length.


Pssm-ID: 432661  Cd Length: 443  Bit Score: 41.43  E-value: 1.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18397783   345 GRASLTAQYGNFQKFFFDLTRFhaRLDFPHGLRflTGATSVAQDLLNSRQpsleafqkicpeVL-VSLQQQIVGPFSFKV 423
Cdd:pfam12600 333 GTVGLQGQLGHFSRPFLDYTGF--NISYSQGLK--SGESPFLFDRIVDLK------------VLsAGLTQQIYGPLRLGV 396


                  ....*..
gi 18397783   424 ESGIEID 430
Cdd:pfam12600 397 QTSINLD 403
 
Name Accession Description Interval E-value
DUF3769 pfam12600
Protein of unknown function (DUF3769); This family of proteins is found in bacteria and ...
 345-430 1.08e-03

Protein of unknown function (DUF3769); This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 560 and 931 amino acids in length.


Pssm-ID: 432661  Cd Length: 443  Bit Score: 41.43  E-value: 1.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18397783   345 GRASLTAQYGNFQKFFFDLTRFhaRLDFPHGLRflTGATSVAQDLLNSRQpsleafqkicpeVL-VSLQQQIVGPFSFKV 423
Cdd:pfam12600 333 GTVGLQGQLGHFSRPFLDYTGF--NISYSQGLK--SGESPFLFDRIVDLK------------VLsAGLTQQIYGPLRLGV 396


                  ....*..
gi 18397783   424 ESGIEID 430
Cdd:pfam12600 397 QTSINLD 403
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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