|
Name |
Accession |
Description |
Interval |
E-value |
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
70-252 |
2.77e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.69 E-value: 2.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 70 LEDRLAAQNQDVQGLladNQRLAAthvaLKQELEVAQHELQRIMHYIDSLRAEEEIMMREMYDKSMRSEMEL-------- 141
Cdd:COG4942 60 LERRIAALARRIRAL---EQELAA----LEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALllspedfl 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 142 ---REVDAMRAEIQKIRADIKEFTSGRQELTSQVHLMTQDLARLTADLQQIPTLTAEIENTKQELQRARAAIDYEKKGYA 218
Cdd:COG4942 133 davRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELA 212
|
170 180 190
....*....|....*....|....*....|....
gi 18400511 219 ENYEHGKIMEHKLVAMARELEKLRAEIANSETSA 252
Cdd:COG4942 213 AELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
89-250 |
1.47e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.07 E-value: 1.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 89 QRLAATHVALKQELEVAQHELQRIMHYIDSLRAEEEIMMREMYDKSMRSEMELREVDAMRAEIQKIRADIKEFTSGRQEL 168
Cdd:TIGR02169 677 QRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENV 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 169 TSQVHLMTQDLARLTADL----------------QQIPTLTAEIENTKQELQRARAAI-----DYEKKGYAENYEHGKIM 227
Cdd:TIGR02169 757 KSELKELEARIEELEEDLhkleealndlearlshSRIPEIQAELSKLEEEVSRIEARLreieqKLNRLTLEKEYLEKEIQ 836
|
170 180
....*....|....*....|....*..
gi 18400511 228 EhkLVAMARELE----KLRAEIANSET 250
Cdd:TIGR02169 837 E--LQEQRIDLKeqikSIEKEIENLNG 861
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
66-212 |
4.95e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.13 E-value: 4.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 66 QFSILEDRLAAQNQDVQGLLADNQRLAATHVALKQELEVAQHELQRIMHYIDSLRAEEEIMMREM------YDKSMRSEM 139
Cdd:TIGR02168 811 ELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELeallneRASLEEALA 890
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 140 ELR-EVDAMRAEIQKIRADIKEFTSGRQELTSQVHLMTQDLARLTADLQQI-------------------PTLTAEIENT 199
Cdd:TIGR02168 891 LLRsELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLqerlseeysltleeaealeNKIEDDEEEA 970
|
170
....*....|...
gi 18400511 200 KQELQRARAAIDY 212
Cdd:TIGR02168 971 RRRLKRLENKIKE 983
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
70-252 |
8.23e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.62 E-value: 8.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 70 LEDRLAAQNQDVQGLLADNQRLAATHVALKQELEVAQHELQRIMHYIDSLRAEEEIMMREMYDKSMRSEMELREVDAMRA 149
Cdd:COG1196 237 LEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEE 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 150 EIQKIRADIKEFTSGRQELTSQVHLMTQDLARLTADLQQIptLTAEIENTKQELQRARAAIDYEKKGYAENYEHGKIMEH 229
Cdd:COG1196 317 RLEELEEELAELEEELEELEEELEELEEELEEAEEELEEA--EAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA 394
|
170 180
....*....|....*....|...
gi 18400511 230 KLVAMARELEKLRAEIANSETSA 252
Cdd:COG1196 395 AAELAAQLEELEEAEEALLERLE 417
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
70-250 |
1.41e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.97 E-value: 1.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 70 LEDRLAAQNQDVQGLLADNQRLAATHVALKQELEVAQHELQRIMHYIDSLRAEEEIMMREMYDKSMRSEMELREVDAMRA 149
Cdd:TIGR02168 759 LEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATER 838
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 150 EIQKIRADIKEFTSGRQELTSQVHLMTQDLARLTADLQQiptLTAEIENTKQELQRARAAIDYEKKGYAEnyehgkiMEH 229
Cdd:TIGR02168 839 RLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEA---LLNERASLEEALALLRSELEELSEELRE-------LES 908
|
170 180
....*....|....*....|.
gi 18400511 230 KLVAMARELEKLRAEIANSET 250
Cdd:TIGR02168 909 KRSELRRELEELREKLAQLEL 929
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
73-252 |
1.46e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.85 E-value: 1.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 73 RLAAQNQDVQGLLADNQRLAATHVALKQELEVAQHELQRIMHYIDSLRAEEEIMMREMYDKSMRSEMELREVDAMRAEIQ 152
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 153 KIRADIKEFTSGRQELTSQVHLMTQDLARLTADLQQiptLTAEIENTKQELQRARAAIDYEKKGYAENYEHGKIMEHKLV 232
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEE---AEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELL 389
|
170 180
....*....|....*....|
gi 18400511 233 AMARELEKLRAEIANSETSA 252
Cdd:COG1196 390 EALRAAAELAAQLEELEEAE 409
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
70-247 |
1.99e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.20 E-value: 1.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 70 LEDRLAAQNQDVQGLLADNQRLAATHVALKQELEVAQHELQRIMHYIDSLRAEEEIMMREMYDKSMRSEMELREVDAMRA 149
Cdd:TIGR02168 780 AEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAA 859
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 150 EIQKIRADIKEFTSGRQELTSQVHLMTQDLARLTADLQQIPTLTAEIENTKQELQRARAAidyekkgyaenyehgkiMEH 229
Cdd:TIGR02168 860 EIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEE-----------------LRE 922
|
170
....*....|....*...
gi 18400511 230 KLVAMARELEKLRAEIAN 247
Cdd:TIGR02168 923 KLAQLELRLEGLEVRIDN 940
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
70-313 |
2.68e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.59 E-value: 2.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 70 LEDRLAAQNQDVQGLLADNQRLAATHVALKQELEVAQHELQRIMHYIDSLRAEEEIMMREMYDKSMRSEME--------- 140
Cdd:COG3883 35 AQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRSGGSVSYLdvllgsesf 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 141 ---LREVDAMRAEIQKIRADIKEFTSGRQELTSQVHLMTQDLARLTADLQQIPTLTAEIENTKQELQRARAAIDYEKKGY 217
Cdd:COG3883 115 sdfLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAA 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 218 AENYEHGKIMEHKLVAMARELEKLRAEIANSETSAYANGPVGNPGGVAYGGGYGNPEAGYPVNPYQPNYTMNPAQTGVVG 297
Cdd:COG3883 195 EAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAGAGAAGAAGAAAGSAGAAGAAAGAAGA 274
|
250
....*....|....*.
gi 18400511 298 YYPPPYGPQAAWAGGY 313
Cdd:COG3883 275 GAAAASAAGGGAGGAG 290
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
70-210 |
4.32e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.15 E-value: 4.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 70 LEDRLAAQNQDVQGLLADNQRLAATHVALKQELEVAQHELQRIMHYIDSLRAEEEIMMREMydKSMRSEMEL----REVD 145
Cdd:COG1579 22 LEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQL--GNVRNNKEYealqKEIE 99
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 18400511 146 AMRAEIQKIRADIKEFTSGRQELTSQVHLMTQDLARLTADL----QQIPTLTAEIENTKQELQRARAAI 210
Cdd:COG1579 100 SLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELeekkAELDEELAELEAELEELEAEREEL 168
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
70-251 |
4.69e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 45.10 E-value: 4.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 70 LEDRLAAQNQDVQGLLADNQRLAathvalkQELEVAQHELQRIMHYIDSLRAEEEIMMREMYDKSMRSEMELREVDAMRA 149
Cdd:pfam05483 273 LEEKTKLQDENLKELIEKKDHLT-------KELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKA 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 150 EIQKIRADIKEFTSGRQEL-----------TSQVHLMTQDLARLTADLQQIPTLTAEIENTKQELQRARA---AIDYEKK 215
Cdd:pfam05483 346 AHSFVVTEFEATTCSLEELlrteqqrleknEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAedeKLLDEKK 425
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 18400511 216 GYAENYEHGKIMEHKLV----AMARELEKLRAEIANSETS 251
Cdd:pfam05483 426 QFEKIAEELKGKEQELIfllqAREKEIHDLEIQLTAIKTS 465
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
70-250 |
5.02e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 5.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 70 LEDRLAAQNQDVQGLLADNQRLAATHVALKQELEVAQHELQRIMHYIDSLRAEEEImmremydksMRSEMELREVDAMRA 149
Cdd:COG4913 615 LEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREI---------AELEAELERLDASSD 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 150 EIQKIRADIKEFTSGRQELTSQVHLMTQDLARLTADLQQIptlTAEIENTKQELQRARAAIDYEKKGYAENYEHGKIMEH 229
Cdd:COG4913 686 DLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQA---EEELDELQDRLEAAEDLARLELRALLEERFAAALGDA 762
|
170 180
....*....|....*....|....*
gi 18400511 230 KLVAMARELE----KLRAEIANSET 250
Cdd:COG4913 763 VERELRENLEeridALRARLNRAEE 787
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
80-254 |
9.81e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.16 E-value: 9.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 80 DVQGLLADNQRLAATHVALKQELEVAQHELQRIMHYIDSLRAEEEIMMREMYDKSMRSEMELREVDAMRAEIQKIRADIK 159
Cdd:COG1196 226 EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 160 EFTSGRQELtsqvhlmTQDLARLTADLQQiptLTAEIENTKQELQRARAaidyEKKGYAENYEHGKIMEHKLVAMARELE 239
Cdd:COG1196 306 RLEERRREL-------EERLEELEEELAE---LEEELEELEEELEELEE----ELEEAEEELEEAEAELAEAEEALLEAE 371
|
170
....*....|....*
gi 18400511 240 KLRAEIANSETSAYA 254
Cdd:COG1196 372 AELAEAEEELEELAE 386
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
63-208 |
1.16e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 1.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 63 LPPQFSILEDRLAAQNQDVQGLLADNQRLAATHVALKQELEVAQHELQRIMH--YIDSLRAEEEIMMREMYDKSMRSEME 140
Cdd:COG3206 210 LSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQspVIQQLRAQLAELEAELAELSARYTPN 289
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 18400511 141 LREVDAMRAEIQKIRADIK--------EFTSGRQELTSQVHLMTQDLARLTADLQQIPTLTAEIENTKQELQRARA 208
Cdd:COG3206 290 HPDVIALRAQIAALRAQLQqeaqrilaSLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARE 365
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
68-202 |
1.35e-04 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 43.08 E-value: 1.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 68 SILEDRLAAQNQDVQGLLADNQRLAATHVALKQELEVAQHELqrimhyiDSLR-AEEEImmrEMYDKSmrsemelrEVDA 146
Cdd:smart00787 147 EGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEEL-------RQLKqLEDEL---EDCDPT--------ELDR 208
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 18400511 147 MRAEIQKIRADIKEFTSGRQELTSQVHLMTQDLARLTADLQQIPTLTAEIENTKQE 202
Cdd:smart00787 209 AKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQ 264
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
72-235 |
1.63e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.22 E-value: 1.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 72 DRLAAQNQDVQGLLADNQRLAATHVALKQELEVAQHELQRIMHYIDSLRAEEEIM-----MREMYDKSMRSEMELREVDA 146
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEaleaeLAELPERLEELEERLEELRE 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 147 MRAEIQKIRADIKEFTSGRQELTSQVHLMT-QDLARLTADL----QQIPTLTAEIENTKQELQRARAAIDYEKKGYAENY 221
Cdd:COG4717 161 LEEELEELEAELAELQEELEELLEQLSLATeEELQDLAEELeelqQRLAELEEELEEAQEELEELEEELEQLENELEAAA 240
|
170
....*....|....
gi 18400511 222 EHGKIMEHKLVAMA 235
Cdd:COG4717 241 LEERLKEARLLLLI 254
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
70-247 |
2.65e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 2.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 70 LEDRLAAQNQDVQGLLADNQRLAATHVALKQELEVAQHELQRImhyidSLRAEEEImmremydksmrsemeLREVDAMRA 149
Cdd:COG4913 293 LEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGN-----GGDRLEQL---------------EREIERLER 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 150 EIQKIRADIKEFtsgrQELTSQVHL-MTQDLARLTADLQQIPTLTAEIENTKQELQRARAAIDYEKKgyaenyehgkime 228
Cdd:COG4913 353 ELEERERRRARL----EALLAALGLpLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALR------------- 415
|
170
....*....|....*....
gi 18400511 229 hklvAMARELEKLRAEIAN 247
Cdd:COG4913 416 ----DLRRELRELEAEIAS 430
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
73-220 |
2.70e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 42.20 E-value: 2.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 73 RLAAQNQDVQGLLADNQRLAATHVALKQELEVAQHELQRIMHYIDSLraEEEIMMREMYDKSMRSEMELR--EVDAMRAE 150
Cdd:COG4372 39 ELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEEL--NEQLQAAQAELAQAQEELESLqeEAEELQEE 116
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 151 IQKIRADIKEFTSGRQELTSQVHLMTQDLARLTADLQQiptLTAEIENTKQELQRARAAIDYEKKGYAEN 220
Cdd:COG4372 117 LEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKE---LEEQLESLQEELAALEQELQALSEAEAEQ 183
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
63-250 |
2.88e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 42.65 E-value: 2.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 63 LPPQFSILEDRLAAQNQDVQGLLADNQRLAATHVALKQELEVAQHELQRIMHYIDSLRAEEEIMMREMYDKSMRSEMELR 142
Cdd:TIGR00618 210 TPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRA 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 143 EVDAMRAEIQKIRADI-KEFTSGRQELTSQVHLMTQDLARLTADLQQiptlTAEIENTKQELQRARAAIDY------EKK 215
Cdd:TIGR00618 290 RKAAPLAAHIKAVTQIeQQAQRIHTELQSKMRSRAKLLMKRAAHVKQ----QSSIEEQRRLLQTLHSQEIHirdaheVAT 365
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 18400511 216 GYAENYEHGKIMEH--------------KLVAMARELEKLRAEIANSET 250
Cdd:TIGR00618 366 SIREISCQQHTLTQhihtlqqqkttltqKLQSLCKELDILQREQATIDT 414
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
68-250 |
4.84e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.68 E-value: 4.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 68 SILEDRLAAQNQDV-----QGLLADNQRLAATHVALKqELEVAQHELQRIMHYIDSLRAEEEIMMREMYdksmrsemELR 142
Cdd:COG4717 45 AMLLERLEKEADELfkpqgRKPELNLKELKELEEELK-EAEEKEEEYAELQEELEELEEELEELEAELE--------ELR 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 143 EVDAMRAEIQKIRADIKEFTSGRQELTS---QVHLMTQDLARLTADLQQIPTLTAEIENTKQELQRARAAIDYEKkgyae 219
Cdd:COG4717 116 EELEKLEKLLQLLPLYQELEALEAELAElpeRLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLAT----- 190
|
170 180 190
....*....|....*....|....*....|.
gi 18400511 220 nyehgkimEHKLVAMARELEKLRAEIANSET 250
Cdd:COG4717 191 --------EEELQDLAEELEELQQRLAELEE 213
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
58-247 |
5.23e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.68 E-value: 5.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 58 VDARGLPPQFSILEDR-LAAQNQDVQGLLADNQRLAAthvalkqelevaQHELQRIMHYIDSLRAEEEIMMREMYDksmR 136
Cdd:COG4717 325 LAALGLPPDLSPEELLeLLDRIEELQELLREAEELEE------------ELQLEELEQEIAALLAEAGVEDEEELR---A 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 137 SEMELREVDAMRAEIQKIRADIKEFTSGRQELtsqvhLMTQDLARLTADLQQIPTLTAEIENTKQELQRARAAIDYEKKG 216
Cdd:COG4717 390 ALEQAEEYQELKEELEELEEQLEELLGELEEL-----LEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQ 464
|
170 180 190
....*....|....*....|....*....|.
gi 18400511 217 YAEnyehgkimEHKLVAMARELEKLRAEIAN 247
Cdd:COG4717 465 LEE--------DGELAELLQELEELKAELRE 487
|
|
| ADIP |
pfam11559 |
Afadin- and alpha -actinin-Binding; This family is found in mammals where it is localized at ... |
133-246 |
6.19e-04 |
|
Afadin- and alpha -actinin-Binding; This family is found in mammals where it is localized at cell-cell adherens junctions, and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins localized at Cell-Cell Adherens Junctions.
Pssm-ID: 463295 [Multi-domain] Cd Length: 151 Bit Score: 39.61 E-value: 6.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 133 KSMRSEMELREvdAMRAEIQKIRADIKEFTSGRQELTSQVHLMTQDLARLTADLQQ----IPTLTAEIENTKQELQRARA 208
Cdd:pfam11559 45 QQRDRDLEFRE--SLNETIRTLEAEIERLQSKIERLKTQLEDLERELALLQAKERQlekkLKTLEQKLKNEKEELQRLKN 122
|
90 100 110
....*....|....*....|....*....|....*...
gi 18400511 209 AIDYEKKGYAenyehgkimeHKLVAMARELEKLRAEIA 246
Cdd:pfam11559 123 ALQQIKTQFA----------HEVKKRDREIEKLKERLA 150
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
47-204 |
6.76e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.59 E-value: 6.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 47 MIDDSREPQFRVDARGLPPQFSILEDRLAAQNQDVQGLLADNQRLAAthvaLKQELEVAQHELQrimHYIDSLRAEEE-- 124
Cdd:TIGR02169 787 RLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEK----EIQELQEQRIDLK---EQIKSIEKEIEnl 859
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 125 -IMMREMYDKSMRSEMELREVDA----MRAEIQKIRADIKEFTSGRQELTSQVHLMTQDLARLTADLQQIPTLTAEIENT 199
Cdd:TIGR02169 860 nGKKEELEEELEELEAALRDLESrlgdLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDP 939
|
....*
gi 18400511 200 KQELQ 204
Cdd:TIGR02169 940 KGEDE 944
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
69-246 |
7.64e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 7.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 69 ILEDRLAAQnqDVQGLLADNQRLAATHVALKQELEVAQHeLQRIM-HYIDSLRAEEEIMMREMYDKSMRSEMELREVDAM 147
Cdd:COG4913 217 MLEEPDTFE--AADALVEHFDDLERAHEALEDAREQIEL-LEPIReLAERYAAARERLAELEYLRAALRLWFAQRRLELL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 148 RAEIQKIRADIKEFTSGRQELTSQVHLMTQDLARLTADLQQIPT-----LTAEIENTKQELQRARAAidyekkgyAENYE 222
Cdd:COG4913 294 EAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGdrleqLEREIERLERELEERERR--------RARLE 365
|
170 180
....*....|....*....|....*
gi 18400511 223 HG-KIMEHKLVAMARELEKLRAEIA 246
Cdd:COG4913 366 ALlAALGLPLPASAEEFAALRAEAA 390
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
102-249 |
7.86e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.20 E-value: 7.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 102 LEVAQHELQRIMHYIDSLRAE-EEIMMREMYDKSMRSEME------LREVDA-------MRAEIQKIRADIKEFTSGRQE 167
Cdd:PRK03918 160 YENAYKNLGEVIKEIKRRIERlEKFIKRTENIEELIKEKEkeleevLREINEisselpeLREELEKLEKEVKELEELKEE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 168 LTS---QVHLMTQDLARLTADLQQIPTLTAEIENTKQELQRARAAIDyEKKGYAENYEH-GKIMEHKLVAMAR---ELEK 240
Cdd:PRK03918 240 IEElekELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIKlSEFYEEYLDELREiekRLSR 318
|
....*....
gi 18400511 241 LRAEIANSE 249
Cdd:PRK03918 319 LEEEINGIE 327
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
133-249 |
9.14e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.08 E-value: 9.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 133 KSMRSEMELREVDAMRAEIQKIRADIkeftsgrQELTSQVHLMTQDLARLTADLQQiptLTAEIENTKQELQRARAAID- 211
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAEL-------EELEAELEELEAELEELEAELAE---LEAELEELRLELEELELELEe 285
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 18400511 212 -----YEKKGYAENYEHGKIMEH-KLVAMARELEKLRAEIANSE 249
Cdd:COG1196 286 aqaeeYELLAELARLEQDIARLEeRRRELEERLEELEEELAELE 329
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
70-249 |
1.51e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 40.27 E-value: 1.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 70 LEDRLAAQNQDVQGLLADNQRLAATHVALKQELEVAQHELQRIMHYIDSLRAEEEIMMrEMYDKSMRSEMELREVDAMRA 149
Cdd:PRK01156 188 LEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELS-SLEDMKNRYESEIKTAESDLS 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 150 EIQKIRADIKEFTSGRQELTS-QVHLMTQDLARLTADLQQIPTLTAEIENTKQELQRARAAI-----------DY-EKKG 216
Cdd:PRK01156 267 MELEKNNYYKELEERHMKIINdPVYKNRNYINDYFKYKNDIENKKQILSNIDAEINKYHAIIkklsvlqkdynDYiKKKS 346
|
170 180 190
....*....|....*....|....*....|....*..
gi 18400511 217 YAENYEHG----KIMEHKLVAMARELEKLRAEIANSE 249
Cdd:PRK01156 347 RYDDLNNQilelEGYEMDYNSYLKSIESLKKKIEEYS 383
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
66-247 |
1.55e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.43 E-value: 1.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 66 QFSILEDRLAAQNQDVQGLLADNQRLAATHVALKQELEVAQHELQRIMHYIDSLRAEEEIMMREMYDKSMR-SEMELR-- 142
Cdd:TIGR02168 226 ELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEiSRLEQQkq 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 143 ----EVDAMRAEIQKIRADIKEFTSGRQELTSQVHLMTQDLARLTADLQ----QIPTLTAEIENTKQELQRARAAIDYEK 214
Cdd:TIGR02168 306 ilreRLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELEsleaELEELEAELEELESRLEELEEQLETLR 385
|
170 180 190
....*....|....*....|....*....|...
gi 18400511 215 KGYAENYEHGKIMEHKLVAMARELEKLRAEIAN 247
Cdd:TIGR02168 386 SKVAQLELQIASLNNEIERLEARLERLEDRRER 418
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
55-258 |
1.56e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.44 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 55 QFRVDARGLPPQFSILEDRLAAQNQDVQGLLADNQRLAATHVALKQELEVAQHElqrimhyIDSLRAEEeimmREMYDKS 134
Cdd:TIGR02169 347 EERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKRE-------INELKREL----DRLQEEL 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 135 MRSEMELREvdamraeiqkIRADIKEFTSGRQELTSQVHlmtqdlarltadlqqipTLTAEIENTKQELQRARA-AIDYE 213
Cdd:TIGR02169 416 QRLSEELAD----------LNAAIAGIEAKINELEEEKE-----------------DKALEIKKQEWKLEQLAAdLSKYE 468
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 18400511 214 KKGYAENYEHGKImEHKLVAMARELEKLRAEIANSETSAYANGPV 258
Cdd:TIGR02169 469 QELYDLKEEYDRV-EKELSKLQRELAEAEAQARASEERVRGGRAV 512
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
98-210 |
1.76e-03 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 39.74 E-value: 1.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 98 LKQELEVAQHELQRIMHYIDSLRAEeeimMREMYDKsmrsemELREVDAMRAEIQKIRADIKEFTSGRQELTSQVHLMTQ 177
Cdd:pfam09787 52 LRQERDLLREEIQKLRGQIQQLRTE----LQELEAQ------QQEEAESSREQLQELEEQLATERSARREAEAELERLQE 121
|
90 100 110
....*....|....*....|....*....|....
gi 18400511 178 DLARLTADL-QQIPTLTAEIENTKQELQRARAAI 210
Cdd:pfam09787 122 ELRYLEEELrRSKATLQSRIKDREAEIEKLRNQL 155
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
57-255 |
2.67e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 39.12 E-value: 2.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 57 RVDARGLPPQFSILedrLAAQNQDVQGLLADNQRLAATHVALKQELEVAQHELQRIMHYIDSLRAEEEIMMREMYDKSMR 136
Cdd:COG4372 12 RLSLFGLRPKTGIL---IAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 137 SEMELREVDAMRAEIQKIRADIKEFTSGRQELTSQVHLMTQDLARLTADLQQIPTLTAEIENTKQELQRARAAIDYEKKG 216
Cdd:COG4372 89 LQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAA 168
|
170 180 190
....*....|....*....|....*....|....*....
gi 18400511 217 YAENYEHGKIMEHKlvamaRELEKLRAEIANSETSAYAN 255
Cdd:COG4372 169 LEQELQALSEAEAE-----QALDELLKEANRNAEKEEEL 202
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
143-261 |
2.84e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 38.98 E-value: 2.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 143 EVDAMRAEIQKIRADIKEFTSGRQELTSQVHLMTQDLARLTadlQQIPTLTAEIENTKQELQRARAAIdyekkgyaenye 222
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALE---RRIAALARRIRALEQELAALEAEL------------ 85
|
90 100 110
....*....|....*....|....*....|....*....
gi 18400511 223 hgKIMEHKLVAMARELEKLRAEIANSETSAYANGPVGNP 261
Cdd:COG4942 86 --AELEKEIAELRAELEAQKEELAELLRALYRLGRQPPL 122
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
109-254 |
3.10e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 39.37 E-value: 3.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 109 LQRIMHYIdsLRAEEEIMMREMYDKSMR-SEMELREVDAMRAEIQKIRADIKEFtsgrQELTSQVHLMTQDLARLTADLQ 187
Cdd:COG4717 39 LLAFIRAM--LLERLEKEADELFKPQGRkPELNLKELKELEEELKEAEEKEEEY----AELQEELEELEEELEELEAELE 112
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 18400511 188 QiptLTAEIENTKQELQRARAAIDYEK-----KGYAENYEHGKIMEHKLVAMARELEKLRAEIANSETSAYA 254
Cdd:COG4717 113 E---LREELEKLEKLLQLLPLYQELEAleaelAELPERLEELEERLEELRELEEELEELEAELAELQEELEE 181
|
|
| PRK12758 |
PRK12758 |
DNA gyrase/topoisomerase IV subunit A; |
98-222 |
3.14e-03 |
|
DNA gyrase/topoisomerase IV subunit A;
Pssm-ID: 237192 [Multi-domain] Cd Length: 869 Bit Score: 39.22 E-value: 3.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 98 LKQELEVAQHELQRIMHYiDSLraeEEIMMRE-MYDksmrsemELREVDAMRAEIQKIRADIKEFTSG-RQELTsqvhlm 175
Cdd:PRK12758 345 LKQELEIRLSELEEQWHF-ASL---EKIFIEErIYK-------EIEEAETWEAVIEAIDKGLEPFKKQfIREVT------ 407
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 18400511 176 TQDLARLT--------------ADlQQIPTLTAEIENTKQELQR-ARAAIDYE---KKGYAENYE 222
Cdd:PRK12758 408 EDDIVRLTeikikriskfdsdkAD-ELIARLEAEIAEVKHHLAHlTDYAIAYFtnlKKKYGKGRE 471
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
97-312 |
4.11e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 38.66 E-value: 4.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 97 ALKQELEVAQHELQRIMHYIDSLRAEEEIMMREMYDKSMRSEMELREVDAMRAEIQKIRADIKE------------FTSG 164
Cdd:COG3883 20 AKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEErreelgeraralYRSG 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 165 R--------------QELTSQVHLMTQ--------------DLARLTADLQQIPTLTAEIENTKQELQRARAAIDYEKKG 216
Cdd:COG3883 100 GsvsyldvllgsesfSDFLDRLSALSKiadadadlleelkaDKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAE 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 217 YAENYEHGKIMEHKLVAMARELEKLRAEIANSETSAYANGPVGNPGGVAYGGGYGNPEAGYPVNPYQPNYTMNPAQTGVV 296
Cdd:COG3883 180 QEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAGAGAAGAAGAAA 259
|
250
....*....|....*.
gi 18400511 297 GYYPPPYGPQAAWAGG 312
Cdd:COG3883 260 GSAGAAGAAAGAAGAG 275
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| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
66-252 |
4.32e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 38.76 E-value: 4.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 66 QFSILEDRLAAQNQDVQGLLADNQRLAATHVALKQELEVAQHELQRIMHYIDSL-----RAEEEIMMREMYDKSMRSEME 140
Cdd:COG1196 282 ELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELeeeleELEEELEEAEEELEEAEAELA 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 141 --LREVDAMRAEIQKIRADIKEFTSGRQELTSQVHLMTQDLARLTADLQQiptLTAEIENTKQELQRARAAIDYEKKGYA 218
Cdd:COG1196 362 eaEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEA---LLERLERLEEELEELEEALAELEEEEE 438
|
170 180 190
....*....|....*....|....*....|....
gi 18400511 219 ENYEHGKIMEHKLVAMARELEKLRAEIANSETSA 252
Cdd:COG1196 439 EEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
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| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
71-246 |
5.61e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 38.38 E-value: 5.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 71 EDRLAAQNQDVQGLLADNQRLAATHVALKQELEVAQHELQRIMHYIDSLRAEEEIMMREmydksmrsemELREVDAMRAE 150
Cdd:COG1196 318 LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE----------AEEELEELAEE 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 151 IQKIRADIKEFTSGRQELTSQVHLMTQDLARLTADLQQiptLTAEIENTKQELQRARAAIDYEKKGYAENYEHGKIMEHK 230
Cdd:COG1196 388 LLEALRAAAELAAQLEELEEAEEALLERLERLEEELEE---LEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLEL 464
|
170
....*....|....*.
gi 18400511 231 LVAMARELEKLRAEIA 246
Cdd:COG1196 465 LAELLEEAALLEAALA 480
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
55-207 |
7.57e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 37.95 E-value: 7.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 55 QFRVDARGLPPQFSILEDRLAAQNQDVQGLLADNQRLAATHVALKQE----LEVAQHELQRIMHYIDSLRA------EEE 124
Cdd:pfam07888 70 QWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEkdalLAQRAAHEARIRELEEDIKTltqrvlERE 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 125 IMMREMYDKSMRSEMELREVDAMR-----------AEIQKIRADIKEFTSGRQELTSQVHLMTQDLARLTADLQQIPTLT 193
Cdd:pfam07888 150 TELERMKERAKKAGAQRKEEEAERkqlqaklqqteEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKE 229
|
170
....*....|....
gi 18400511 194 AEIENTKQELQRAR 207
Cdd:pfam07888 230 AENEALLEELRSLQ 243
|
|
| DUF445 |
pfam04286 |
Protein of unknown function (DUF445); Predicted to be a membrane protein. |
87-203 |
9.25e-03 |
|
Protein of unknown function (DUF445); Predicted to be a membrane protein.
Pssm-ID: 427840 [Multi-domain] Cd Length: 368 Bit Score: 37.61 E-value: 9.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18400511 87 DNQRLAAthVALKQELEVAQHE------LQRIMHYIDSLRAEEEImmREMYDKSMRSEMELREVDAMRAE---------I 151
Cdd:pfam04286 121 DLAPLLG--KLLELLLAEGRHQallddlLDRLRDWLRSEEGKQRI--AEMIDEFLEEWGPLVALLGGIAEmilralsslL 196
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 18400511 152 QKIRADIKEFTsgRQELTSQVHlmtqdlaRLTADLQQIPTLTAEIENTKQEL 203
Cdd:pfam04286 197 DEVQADPDHPL--RLAFDRAVR-------ELITDLLNDPELRAEVEELKQKL 239
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