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Conserved domains on  [gi|18401769|ref|NP_566597|]
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myb domain protein 4r1 [Arabidopsis thaliana]

Protein Classification

SANT/Myb-like DNA-binding domain-containing protein( domain architecture ID 12160367)

SANT (SWI3, ADA2, N-CoR and TFIIIB)/Myb-like DNA-binding domain-containing protein binds DNA and may function as a transcription factor

CATH:  1.20.58.1880
Gene Ontology:  GO:0006355|GO:0003677|GO:0003700
PubMed:  8882580|15040448|16877755
SCOP:  4000317

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
REB1 super family cl34920
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 546-642 1.61e-15

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


The actual alignment was detected with superfamily member COG5147:

Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 80.22  E-value: 1.61e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18401769 546 KGTWSLEEDKRVKVAVTLFGSQNWHKISQFVPGRTQTQCRERWLNCLDPKVNRGKWTEEEDEKLREAIAEHGYSWSKVAT 625
Cdd:COG5147  20 GGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQWSTIAD 99

                        90
                ....*....|....*..
gi 18401769 626 NLSCRTDNQCLRRWKRL 642
Cdd:COG5147 100 YKDRRTAQQCVERYVNT 116
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
495-543 6.37e-13

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


:

Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 63.78  E-value: 6.37e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 18401769    495 KKEWTAEEDDQLRTAVELFGEKDWQSVANVLKGRTGTQCSNRWKKSLRP 543
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 445-506 4.95e-09

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


:

Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 53.08  E-value: 4.95e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 18401769   445 WTAAEDKNLLRTIEQTSLtDWVDIAVSLGtNRTPFQCLARYQRSLNPSILKKEWTAEEDDQL 506
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYGN-DWKQIAKELG-RRTPKQCFDRWRRKLNPKISRGPWSKEEDQRL 60
 
Name Accession Description Interval E-value
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 546-642 1.61e-15

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 80.22  E-value: 1.61e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18401769 546 KGTWSLEEDKRVKVAVTLFGSQNWHKISQFVPGRTQTQCRERWLNCLDPKVNRGKWTEEEDEKLREAIAEHGYSWSKVAT 625
Cdd:COG5147  20 GGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQWSTIAD 99

                        90
                ....*....|....*..
gi 18401769 626 NLSCRTDNQCLRRWKRL 642
Cdd:COG5147 100 YKDRRTAQQCVERYVNT 116
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 549-609 1.46e-13

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 65.79  E-value: 1.46e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 18401769   549 WSLEEDKRVKVAVTLFGsQNWHKISQFVPGRTQTQCRERWLNCLDPKVNRGKWTEEEDEKL 609
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYG-NDWKQIAKELGRRTPKQCFDRWRRKLNPKISRGPWSKEEDQRL 60
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
495-543 6.37e-13

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 63.78  E-value: 6.37e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 18401769    495 KKEWTAEEDDQLRTAVELFGEKDWQSVANVLKGRTGTQCSNRWKKSLRP 543
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 497-541 1.75e-12

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 62.21  E-value: 1.75e-12
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 18401769 497 EWTAEEDDQLRTAVELFGEKDWQSVANVLKGRTGTQCSNRWKKSL 541
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 495-539 6.75e-11

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 57.90  E-value: 6.75e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 18401769   495 KKEWTAEEDDQLRTAVELFGeKDWQSVANVLKGRTGTQCSNRWKK 539
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLG-NRWKKIAKLLPGRTDNQCKNRWQN 44
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
598-642 8.77e-11

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 57.62  E-value: 8.77e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 18401769    598 RGKWTEEEDEKLREAIAEHGY-SWSKVATNLSCRTDNQCLRRWKRL 642
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKnNWEKIAKELPGRTAEQCRERWRNL 46
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 600-642 8.83e-11

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 57.59  E-value: 8.83e-11
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 18401769 600 KWTEEEDEKLREAIAEHGY-SWSKVATNLSCRTDNQCLRRWKRL 642
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGKnNWEKIAKELPGRTPKQCRERWRNL 44
PLN03091 PLN03091
hypothetical protein; Provisional
 545-639 1.21e-10

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 64.61  E-value: 1.21e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18401769  545 RKGTWSLEEDKRVKVAVTLFGSQNWHKI-SQFVPGRTQTQCRERWLNCLDPKVNRGKWTEEEDEKLREAIAEHGYSWSKV 623
Cdd:PLN03091  13 RKGLWSPEEDEKLLRHITKYGHGCWSSVpKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQI 92

                         90
                 ....*....|....*.
gi 18401769  624 ATNLSCRTDNQCLRRW 639
Cdd:PLN03091  93 AAQLPGRTDNEIKNLW 108
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 445-506 4.95e-09

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 53.08  E-value: 4.95e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 18401769   445 WTAAEDKNLLRTIEQTSLtDWVDIAVSLGtNRTPFQCLARYQRSLNPSILKKEWTAEEDDQL 506
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYGN-DWKQIAKELG-RRTPKQCFDRWRRKLNPKISRGPWSKEEDQRL 60
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 440-542 1.27e-07

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 53.54  E-value: 1.27e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18401769  440 INHGPWTAAEDKNLLRTIEQTSLTDWVDIAVSLGTNRTPFQCLARYQRSLNPSILKKEWTAEEDDQLRTAVELFGEKdWQ 519
Cdd:PLN03212  23 MKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNR-WS 101

                         90       100
                 ....*....|....*....|...
gi 18401769  520 SVANVLKGRTGTQCSNRWKKSLR 542
Cdd:PLN03212 102 LIAGRIPGRTDNEIKNYWNTHLR 124
SANT_CDC5_II cd11659
SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II; In humans, ...
 438-490 2.07e-04

SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II; In humans, cell division cycle 5-like protein (CDC5) functions in pre-mRNA splicing in cell cycle control. The DNA-binding, myb-like domain of CDC5 is a member of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of DNA-binding Myb domains and is found in a diverse set of proteins.


Pssm-ID: 212557 [Multi-domain]  Cd Length: 53  Bit Score: 39.60  E-value: 2.07e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 18401769 438 PLINHGPWTAAEDKNLLRTIeQTSLTDWVDIAVSLGtnRTPFQCLARYQRSLN 490
Cdd:cd11659   1 PSIKKTEWTREEDEKLLHLA-KLLPTQWRTIAPIVG--RTAQQCLERYNKLLD 50
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
443-491 2.60e-04

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 39.51  E-value: 2.60e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 18401769    443 GPWTAAEDKNLLRTIEQTSLTDWVDIAVSLGtNRTPFQCLARYQRSLNP 491
Cdd:smart00717   2 GEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWRNLLKP 49
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 410-516 2.14e-03

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 41.70  E-value: 2.14e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18401769 410 LPKINWDSLD--IKDRSAAECEARWMSSEDPLINHGPWTAAEDKNLLRTIEQTSlTDWVDIAVSLGtNRTPFQCLARYQR 487
Cdd:COG5147  38 LGPNNWSKVAslLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELG-TQWSTIADYKD-RRTAQQCVERYVN 115

                        90       100
                ....*....|....*....|....*....
gi 18401769 488 SLNPSiLKKEWTAEEDDQLRTAVELFGEK 516
Cdd:COG5147 116 TLEDL-SSTHDSKLQRRNEFDKIDPFNEN 143
 
Name Accession Description Interval E-value
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 546-642 1.61e-15

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 80.22  E-value: 1.61e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18401769 546 KGTWSLEEDKRVKVAVTLFGSQNWHKISQFVPGRTQTQCRERWLNCLDPKVNRGKWTEEEDEKLREAIAEHGYSWSKVAT 625
Cdd:COG5147  20 GGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQWSTIAD 99

                        90
                ....*....|....*..
gi 18401769 626 NLSCRTDNQCLRRWKRL 642
Cdd:COG5147 100 YKDRRTAQQCVERYVNT 116
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 498-639 5.37e-14

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 75.59  E-value: 5.37e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18401769 498 WTAEEDDQLRTAVELFGEKDWQSVANVLKGRTGTQCSNRWKKSLRPTRK-GTWSLEEDKRVKVAVTLFGSQnWHKISQFV 576
Cdd:COG5147  23 WKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKkKNWSEEEDEQLIDLDKELGTQ-WSTIADYK 101

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 18401769 577 PGRTQTQCRERWLNCLDPKVNRgKWTEEEDEKLREAIAEHGYSWSKvatnLSCRTDNQCLRRW 639
Cdd:COG5147 102 DRRTAQQCVERYVNTLEDLSST-HDSKLQRRNEFDKIDPFNENSAR----RPDIYEDELLERE 159
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 549-609 1.46e-13

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 65.79  E-value: 1.46e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 18401769   549 WSLEEDKRVKVAVTLFGsQNWHKISQFVPGRTQTQCRERWLNCLDPKVNRGKWTEEEDEKL 609
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYG-NDWKQIAKELGRRTPKQCFDRWRRKLNPKISRGPWSKEEDQRL 60
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
495-543 6.37e-13

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 63.78  E-value: 6.37e-13
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 18401769    495 KKEWTAEEDDQLRTAVELFGEKDWQSVANVLKGRTGTQCSNRWKKSLRP 543
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 598-642 6.64e-13

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 63.68  E-value: 6.64e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 18401769   598 RGKWTEEEDEKLREAIAEHGYSWSKVATNLSCRTDNQCLRRWKRL 642
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNY 45
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 497-541 1.75e-12

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 62.21  E-value: 1.75e-12
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 18401769 497 EWTAEEDDQLRTAVELFGEKDWQSVANVLKGRTGTQCSNRWKKSL 541
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 440-555 4.15e-11

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 66.35  E-value: 4.15e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18401769 440 INHGPWTAAEDKNLLRTIEQTSLTDWVDIAVSLgTNRTPFQCLARYQRSLNPSILKKEWTAEEDDQLRTAVELFGEKdWQ 519
Cdd:COG5147  18 RKGGSWKRTEDEDLKALVKKLGPNNWSKVASLL-ISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQ-WS 95

                        90       100       110
                ....*....|....*....|....*....|....*.
gi 18401769 520 SVANVLKGRTGTQCSNRWKKSLRPTRKGTWSLEEDK 555
Cdd:COG5147  96 TIADYKDRRTAQQCVERYVNTLEDLSSTHDSKLQRR 131
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 495-539 6.75e-11

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 57.90  E-value: 6.75e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 18401769   495 KKEWTAEEDDQLRTAVELFGeKDWQSVANVLKGRTGTQCSNRWKK 539
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLG-NRWKKIAKLLPGRTDNQCKNRWQN 44
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
598-642 8.77e-11

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 57.62  E-value: 8.77e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 18401769    598 RGKWTEEEDEKLREAIAEHGY-SWSKVATNLSCRTDNQCLRRWKRL 642
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKnNWEKIAKELPGRTAEQCRERWRNL 46
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 498-557 8.80e-11

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 58.09  E-value: 8.80e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 18401769   498 WTAEEDDQLRTAVELFGeKDWQSVANVLKGRTGTQCSNRWKKSLRPTRK-GTWSLEEDKRV 557
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYG-NDWKQIAKELGRRTPKQCFDRWRRKLNPKISrGPWSKEEDQRL 60
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 600-642 8.83e-11

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 57.59  E-value: 8.83e-11
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 18401769 600 KWTEEEDEKLREAIAEHGY-SWSKVATNLSCRTDNQCLRRWKRL 642
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGKnNWEKIAKELPGRTPKQCRERWRNL 44
PLN03091 PLN03091
hypothetical protein; Provisional
 545-639 1.21e-10

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 64.61  E-value: 1.21e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18401769  545 RKGTWSLEEDKRVKVAVTLFGSQNWHKI-SQFVPGRTQTQCRERWLNCLDPKVNRGKWTEEEDEKLREAIAEHGYSWSKV 623
Cdd:PLN03091  13 RKGLWSPEEDEKLLRHITKYGHGCWSSVpKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQI 92

                         90
                 ....*....|....*.
gi 18401769  624 ATNLSCRTDNQCLRRW 639
Cdd:PLN03091  93 AAQLPGRTDNEIKNLW 108
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 546-592 1.39e-10

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 57.13  E-value: 1.39e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 18401769   546 KGTWSLEEDKRVKVAVTLFGSqNWHKISQFVPGRTQTQCRERWLNCL 592
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGN-RWKKIAKLLPGRTDNQCKNRWQNYL 46
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
546-594 1.90e-10

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 56.85  E-value: 1.90e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 18401769    546 KGTWSLEEDKRVKVAVTLFGSQNWHKISQFVPGRTQTQCRERWLNCLDP 594
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 548-590 3.15e-10

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 56.04  E-value: 3.15e-10
                        10        20        30        40
                ....*....|....*....|....*....|....*....|...
gi 18401769 548 TWSLEEDKRVKVAVTLFGSQNWHKISQFVPGRTQTQCRERWLN 590
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRN 43
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 445-506 4.95e-09

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 53.08  E-value: 4.95e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 18401769   445 WTAAEDKNLLRTIEQTSLtDWVDIAVSLGtNRTPFQCLARYQRSLNPSILKKEWTAEEDDQL 506
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYGN-DWKQIAKELG-RRTPKQCFDRWRRKLNPKISRGPWSKEEDQRL 60
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 601-647 1.38e-08

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 51.93  E-value: 1.38e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 18401769   601 WTEEEDEKLREAIAEHGYSWSKVATNLSCRTDNQCLRRWKRLYPHQV 647
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYGNDWKQIAKELGRRTPKQCFDRWRRKLNPKI 47
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 440-542 1.27e-07

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 53.54  E-value: 1.27e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18401769  440 INHGPWTAAEDKNLLRTIEQTSLTDWVDIAVSLGTNRTPFQCLARYQRSLNPSILKKEWTAEEDDQLRTAVELFGEKdWQ 519
Cdd:PLN03212  23 MKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNR-WS 101

                         90       100
                 ....*....|....*....|...
gi 18401769  520 SVANVLKGRTGTQCSNRWKKSLR 542
Cdd:PLN03212 102 LIAGRIPGRTDNEIKNYWNTHLR 124
PLN03091 PLN03091
hypothetical protein; Provisional
 495-599 1.60e-07

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 54.60  E-value: 1.60e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18401769  495 KKEWTAEEDDQLRTAVELFGEKDWQSVANvLKG--RTGTQCSNRWKKSLRPT-RKGTWSLEEDKRVKVAVTLFGSQnWHK 571
Cdd:PLN03091  14 KGLWSPEEDEKLLRHITKYGHGCWSSVPK-QAGlqRCGKSCRLRWINYLRPDlKRGTFSQQEENLIIELHAVLGNR-WSQ 91

                         90       100
                 ....*....|....*....|....*....
gi 18401769  572 ISQFVPGRTQTQCRERWLNCLDPKV-NRG 599
Cdd:PLN03091  92 IAAQLPGRTDNEIKNLWNSCLKKKLrQRG 120
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 545-639 2.16e-07

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 53.16  E-value: 2.16e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18401769  545 RKGTWSLEEDKRVKVAVTLFGSQNWHKISQFVPG-RTQTQCRERWLNCLDPKVNRGKWTEEEDEKLREAIAEHGYSWSKV 623
Cdd:PLN03212  24 KRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLlRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLI 103

                         90
                 ....*....|....*.
gi 18401769  624 ATNLSCRTDNQCLRRW 639
Cdd:PLN03212 104 AGRIPGRTDNEIKNYW 119
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 498-598 2.80e-07

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 52.77  E-value: 2.80e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18401769  498 WTAEEDDQLRTAVELFGEKDWQSV---ANVLkgRTGTQCSNRWKKSLRPT--RKGTWSLEEDKRVKVAvTLFGSQnWHKI 572
Cdd:PLN03212  28 WTVEEDEILVSFIKKEGEGRWRSLpkrAGLL--RCGKSCRLRWMNYLRPSvkRGGITSDEEDLILRLH-RLLGNR-WSLI 103

                         90       100
                 ....*....|....*....|....*.
gi 18401769  573 SQFVPGRTQTQCRERWLNCLDPKVNR 598
Cdd:PLN03212 104 AGRIPGRTDNEIKNYWNTHLRKKLLR 129
SANT_CDC5_II cd11659
SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II; In humans, ...
 491-541 1.38e-06

SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II; In humans, cell division cycle 5-like protein (CDC5) functions in pre-mRNA splicing in cell cycle control. The DNA-binding, myb-like domain of CDC5 is a member of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of DNA-binding Myb domains and is found in a diverse set of proteins.


Pssm-ID: 212557 [Multi-domain]  Cd Length: 53  Bit Score: 45.76  E-value: 1.38e-06
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|.
gi 18401769 491 PSILKKEWTAEEDDQLRTAVELFGEKdWQSVANVLkGRTGTQCSNRWKKSL 541
Cdd:cd11659   1 PSIKKTEWTREEDEKLLHLAKLLPTQ-WRTIAPIV-GRTAQQCLERYNKLL 49
SANT_CDC5_II cd11659
SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II; In humans, ...
 594-642 1.61e-05

SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II; In humans, cell division cycle 5-like protein (CDC5) functions in pre-mRNA splicing in cell cycle control. The DNA-binding, myb-like domain of CDC5 is a member of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of DNA-binding Myb domains and is found in a diverse set of proteins.


Pssm-ID: 212557 [Multi-domain]  Cd Length: 53  Bit Score: 43.07  E-value: 1.61e-05
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 18401769 594 PKVNRGKWTEEEDEKLREAIAEHGYSWSKVAtNLSCRTDNQCLRRWKRL 642
Cdd:cd11659   1 PSIKKTEWTREEDEKLLHLAKLLPTQWRTIA-PIVGRTAQQCLERYNKL 48
SANT_CDC5_II cd11659
SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II; In humans, ...
 545-593 4.70e-05

SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II; In humans, cell division cycle 5-like protein (CDC5) functions in pre-mRNA splicing in cell cycle control. The DNA-binding, myb-like domain of CDC5 is a member of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of DNA-binding Myb domains and is found in a diverse set of proteins.


Pssm-ID: 212557 [Multi-domain]  Cd Length: 53  Bit Score: 41.53  E-value: 4.70e-05
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*....
gi 18401769 545 RKGTWSLEEDKRVKVAVTLFGSQnWHKISQFVpGRTQTQCRERWLNCLD 593
Cdd:cd11659   4 KKTEWTREEDEKLLHLAKLLPTQ-WRTIAPIV-GRTAQQCLERYNKLLD 50
SANT_TRF cd11660
Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family; Human ...
 549-592 1.89e-04

Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family; Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1.


Pssm-ID: 212558 [Multi-domain]  Cd Length: 50  Bit Score: 39.86  E-value: 1.89e-04
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*..
gi 18401769 549 WSLEEDKRVKVAVTLFGSQNWHKI---SQFVPGRTQTQCRERWLNCL 592
Cdd:cd11660   3 WTDEEDEALVEGVEKYGVGNWAKIlkdYFFVNNRTSVDLKDKWRNLK 49
SANT_CDC5_II cd11659
SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II; In humans, ...
 438-490 2.07e-04

SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II; In humans, cell division cycle 5-like protein (CDC5) functions in pre-mRNA splicing in cell cycle control. The DNA-binding, myb-like domain of CDC5 is a member of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of DNA-binding Myb domains and is found in a diverse set of proteins.


Pssm-ID: 212557 [Multi-domain]  Cd Length: 53  Bit Score: 39.60  E-value: 2.07e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 18401769 438 PLINHGPWTAAEDKNLLRTIeQTSLTDWVDIAVSLGtnRTPFQCLARYQRSLN 490
Cdd:cd11659   1 PSIKKTEWTREEDEKLLHLA-KLLPTQWRTIAPIVG--RTAQQCLERYNKLLD 50
SANT_TRF cd11660
Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family; Human ...
 496-538 2.41e-04

Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family; Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1.


Pssm-ID: 212558 [Multi-domain]  Cd Length: 50  Bit Score: 39.47  E-value: 2.41e-04
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*.
gi 18401769 496 KEWTAEEDDQLRTAVELFGEKDWQSVAN---VLKGRTGTQCSNRWK 538
Cdd:cd11660   1 RKWTDEEDEALVEGVEKYGVGNWAKILKdyfFVNNRTSVDLKDKWR 46
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
443-491 2.60e-04

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 39.51  E-value: 2.60e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 18401769    443 GPWTAAEDKNLLRTIEQTSLTDWVDIAVSLGtNRTPFQCLARYQRSLNP 491
Cdd:smart00717   2 GEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 444-489 3.95e-04

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 38.71  E-value: 3.95e-04
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*.
gi 18401769 444 PWTAAEDKNLLRTIEQTSLTDWVDIAVSLGTnRTPFQCLARYQRSL 489
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPG-RTPKQCRERWRNLL 45
SANT_TRF cd11660
Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family; Human ...
 600-642 7.87e-04

Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family; Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1.


Pssm-ID: 212558 [Multi-domain]  Cd Length: 50  Bit Score: 37.93  E-value: 7.87e-04
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*..
gi 18401769 600 KWTEEEDEKLREAIAEHGY-SWSKV---ATNLSCRTDNQCLRRWKRL 642
Cdd:cd11660   2 KWTDEEDEALVEGVEKYGVgNWAKIlkdYFFVNNRTSVDLKDKWRNL 48
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 410-516 2.14e-03

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 41.70  E-value: 2.14e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18401769 410 LPKINWDSLD--IKDRSAAECEARWMSSEDPLINHGPWTAAEDKNLLRTIEQTSlTDWVDIAVSLGtNRTPFQCLARYQR 487
Cdd:COG5147  38 LGPNNWSKVAslLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELG-TQWSTIADYKD-RRTAQQCVERYVN 115

                        90       100
                ....*....|....*....|....*....
gi 18401769 488 SLNPSiLKKEWTAEEDDQLRTAVELFGEK 516
Cdd:COG5147 116 TLEDL-SSTHDSKLQRRNEFDKIDPFNEN 143
PLN03091 PLN03091
hypothetical protein; Provisional
 443-542 5.37e-03

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 40.35  E-value: 5.37e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18401769  443 GPWTAAEDKNLLRTIEQTSLTDWVDIAVSLGTNRTPFQCLARYQRSLNPSILKKEWTAEEDDQLRTAVELFGEKdWQSVA 522
Cdd:PLN03091  15 GLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNR-WSQIA 93

                         90       100
                 ....*....|....*....|....
gi 18401769  523 NVLKGRTGTQCSNRW----KKSLR 542
Cdd:PLN03091  94 AQLPGRTDNEIKNLWnsclKKKLR 117
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 491-641 6.37e-03

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 40.16  E-value: 6.37e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18401769 491 PSILKKEWTAEEDDQLRTAVELFG-----------------EKDWQSVANVLKGRTGTQCSNRWKKSLRPTR-KGTWSLE 552
Cdd:COG5147 218 NKAFKKGETLALEQEINEYKEKKGlsrkqfceriwstdrdeDKFWPNIYKKLPYRDKKSIYKHLRRKYNIFEqRGKWTKE 297

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18401769 553 EDKRVKVAVTLFGSQnWHKISQFVpGRTQTQCRERWLNC--LDPKVNRGKWTEEEDEKLREAIAE-----HGYS---WSK 622
Cdd:COG5147 298 EEQELAKLVVEHGGS-WTEIGKLL-GRMPNDCRDRWRDYvkCGDTLKRNRWSIEEEELLDKVVNEmrleaQQSSrilWLL 375

                       170
                ....*....|....*....
gi 18401769 623 VATNLSCRTDNQClrRWKR 641
Cdd:COG5147 376 IAQNIRNRLQHHC--RDKY 392
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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