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Conserved domains on  [gi|18403457|ref|NP_566713|]
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Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Arabidopsis thaliana]

Protein Classification

AAI_LTSS domain-containing protein( domain architecture ID 10627303)

AAI_LTSS domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LTP_2 pfam14368
Probable lipid transfer; The members of this family are probably involved in lipid transfer. ...
 5-107 7.36e-20

Probable lipid transfer; The members of this family are probably involved in lipid transfer. The family has several highly conserved cysteines, paired in various ways.


:

Pssm-ID: 433909  Cd Length: 100  Bit Score: 80.22  E-value: 7.36e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18403457     5 ISLVVAMIAVLALPIRGQqqplsqCTPSMMTTVSPCMGFItNSSSNGTSPSSDCCNSLRSLTTGGMGCLCLIVTGTVPFN 84
Cdd:pfam14368   3 LALAAQAPAPPPAPAAAS------CTLSMLSGLSPCLPYL-TGTPAATAPSPACCGALKSAVSTDVTCLCALVTAPLPIG 75

                          90       100
                  ....*....|....*....|...
gi 18403457    85 IPINRTTAVSLPRACNMPRVPLQ 107
Cdd:pfam14368  76 FPINVTRALALPRACGVKTPPSS 98
 
Name Accession Description Interval E-value
LTP_2 pfam14368
Probable lipid transfer; The members of this family are probably involved in lipid transfer. ...
 5-107 7.36e-20

Probable lipid transfer; The members of this family are probably involved in lipid transfer. The family has several highly conserved cysteines, paired in various ways.


Pssm-ID: 433909  Cd Length: 100  Bit Score: 80.22  E-value: 7.36e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18403457     5 ISLVVAMIAVLALPIRGQqqplsqCTPSMMTTVSPCMGFItNSSSNGTSPSSDCCNSLRSLTTGGMGCLCLIVTGTVPFN 84
Cdd:pfam14368   3 LALAAQAPAPPPAPAAAS------CTLSMLSGLSPCLPYL-TGTPAATAPSPACCGALKSAVSTDVTCLCALVTAPLPIG 75

                          90       100
                  ....*....|....*....|...
gi 18403457    85 IPINRTTAVSLPRACNMPRVPLQ 107
Cdd:pfam14368  76 FPINVTRALALPRACGVKTPPSS 98
AAI_LTSS cd00010
AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein ...
 37-101 1.22e-09

AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.


Pssm-ID: 237980  Cd Length: 63  Bit Score: 52.43  E-value: 1.22e-09
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 18403457  37 VSPCMGFITNSSSNGTSpssDCCNSLRSLTTGGMGCLCLIVTGTVPFNIP-INRTTAVSLPRACNM 101
Cdd:cd00010   1 LAPCLSYLTGGATAPPS---DCCSGLKSVVKSDPKCLCAALNGPGASLLGlKNATRALALPAACGL 63
AAI smart00499
Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain ...
 29-108 5.59e-04

Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family;


Pssm-ID: 214698  Cd Length: 79  Bit Score: 37.36  E-value: 5.59e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18403457     29 CTPSMMTtVSPCMGFITnSSSNGTSPSSDCCNSLRSLTTggMGCLCL---IVTGTVPFNIPINRTTAVSLPRACNMPRVP 105
Cdd:smart00499   1 CGQVLLQ-LAPCLSYLV-GGSRGAPPSQQCCSQLRGLNS--AQCRCLalrAAVLGILEIPGLNAQNAASLPSACGVPPPY 76


                   ...
gi 18403457    106 LQC 108
Cdd:smart00499  77 TDC 79
 
Name Accession Description Interval E-value
LTP_2 pfam14368
Probable lipid transfer; The members of this family are probably involved in lipid transfer. ...
 5-107 7.36e-20

Probable lipid transfer; The members of this family are probably involved in lipid transfer. The family has several highly conserved cysteines, paired in various ways.


Pssm-ID: 433909  Cd Length: 100  Bit Score: 80.22  E-value: 7.36e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18403457     5 ISLVVAMIAVLALPIRGQqqplsqCTPSMMTTVSPCMGFItNSSSNGTSPSSDCCNSLRSLTTGGMGCLCLIVTGTVPFN 84
Cdd:pfam14368   3 LALAAQAPAPPPAPAAAS------CTLSMLSGLSPCLPYL-TGTPAATAPSPACCGALKSAVSTDVTCLCALVTAPLPIG 75

                          90       100
                  ....*....|....*....|...
gi 18403457    85 IPINRTTAVSLPRACNMPRVPLQ 107
Cdd:pfam14368  76 FPINVTRALALPRACGVKTPPSS 98
AAI_LTSS cd00010
AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein ...
 37-101 1.22e-09

AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.


Pssm-ID: 237980  Cd Length: 63  Bit Score: 52.43  E-value: 1.22e-09
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 18403457  37 VSPCMGFITNSSSNGTSpssDCCNSLRSLTTGGMGCLCLIVTGTVPFNIP-INRTTAVSLPRACNM 101
Cdd:cd00010   1 LAPCLSYLTGGATAPPS---DCCSGLKSVVKSDPKCLCAALNGPGASLLGlKNATRALALPAACGL 63
AAI smart00499
Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain ...
 29-108 5.59e-04

Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family;


Pssm-ID: 214698  Cd Length: 79  Bit Score: 37.36  E-value: 5.59e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18403457     29 CTPSMMTtVSPCMGFITnSSSNGTSPSSDCCNSLRSLTTggMGCLCL---IVTGTVPFNIPINRTTAVSLPRACNMPRVP 105
Cdd:smart00499   1 CGQVLLQ-LAPCLSYLV-GGSRGAPPSQQCCSQLRGLNS--AQCRCLalrAAVLGILEIPGLNAQNAASLPSACGVPPPY 76


                   ...
gi 18403457    106 LQC 108
Cdd:smart00499  77 TDC 79
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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