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Conserved domains on  [gi|18409199|ref|NP_566939|]
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GATA type zinc finger transcription factor family protein [Arabidopsis thaliana]

Protein Classification

GATA-type transcription factor( domain architecture ID 12207019)

GATA-type transcription factor binds to the DNA consensus sequence [AT]GATA[AG] and may function as a transcription factor/regulator

CATH:  3.30.50.10
Gene Ontology:  GO:0003700|GO:0006357|GO:0008270|GO:0043565
PubMed:  31574210
SCOP:  4003617

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ZnF_GATA smart00401
zinc finger binding to DNA consensus sequence [AT]GATA[AG];
152-194 1.05e-15

zinc finger binding to DNA consensus sequence [AT]GATA[AG];


:

Pssm-ID: 214648 [Multi-domain]  Cd Length: 52  Bit Score: 69.75  E-value: 1.05e-15
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 18409199    152 RRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRTTAAT 194
Cdd:smart00401   4 RSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGLKRPLS 46
GAT1 super family cl35034
GATA Zn-finger-containing transcription factor [Transcription];
90-184 3.45e-03

GATA Zn-finger-containing transcription factor [Transcription];


The actual alignment was detected with superfamily member COG5641:

Pssm-ID: 227928 [Multi-domain]  Cd Length: 498  Bit Score: 38.70  E-value: 3.45e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409199  90 STSSGASSCISNfwDLIHTKNNNSKTAPYNNVPSFSANKPSRGCsgggggggggggGDSLLARRCANCDTTSTPLWRNGP 169
Cdd:COG5641 111 STSNAASPSTNY--TDESNQQFSSYNTTLNPGGTSSLNPNNNQS------------DNSNQPHVCSNCKTTSTPLWRRAS 176

                        90
                ....*....|....*....
gi 18409199 170 RGPKS----LCNACGIRFK 184
Cdd:COG5641 177 SESSLpgnnLCNACGLYLK 195
 
Name Accession Description Interval E-value
ZnF_GATA smart00401
zinc finger binding to DNA consensus sequence [AT]GATA[AG];
152-194 1.05e-15

zinc finger binding to DNA consensus sequence [AT]GATA[AG];


Pssm-ID: 214648 [Multi-domain]  Cd Length: 52  Bit Score: 69.75  E-value: 1.05e-15
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 18409199    152 RRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRTTAAT 194
Cdd:smart00401   4 RSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGLKRPLS 46
GATA pfam00320
GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This ...
 154-185 8.22e-14

GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.


Pssm-ID: 425605 [Multi-domain]  Cd Length: 36  Bit Score: 64.26  E-value: 8.22e-14
                          10        20        30
                  ....*....|....*....|....*....|..
gi 18409199   154 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKK 185
Cdd:pfam00320   1 CSNCGTTKTPLWRRGPNGNRTLCNACGLYYKK 32
ZnF_GATA cd00202
Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] ...
 153-185 3.28e-12

Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C


Pssm-ID: 238123 [Multi-domain]  Cd Length: 54  Bit Score: 60.46  E-value: 3.28e-12
                        10        20        30
                ....*....|....*....|....*....|...
gi 18409199 153 RCANCDTTSTPLWRNGPRGPKSLCNACGIRFKK 185
Cdd:cd00202   1 ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKK 33
GAT1 COG5641
GATA Zn-finger-containing transcription factor [Transcription];
90-184 3.45e-03

GATA Zn-finger-containing transcription factor [Transcription];


Pssm-ID: 227928 [Multi-domain]  Cd Length: 498  Bit Score: 38.70  E-value: 3.45e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409199  90 STSSGASSCISNfwDLIHTKNNNSKTAPYNNVPSFSANKPSRGCsgggggggggggGDSLLARRCANCDTTSTPLWRNGP 169
Cdd:COG5641 111 STSNAASPSTNY--TDESNQQFSSYNTTLNPGGTSSLNPNNNQS------------DNSNQPHVCSNCKTTSTPLWRRAS 176

                        90
                ....*....|....*....
gi 18409199 170 RGPKS----LCNACGIRFK 184
Cdd:COG5641 177 SESSLpgnnLCNACGLYLK 195
 
Name Accession Description Interval E-value
ZnF_GATA smart00401
zinc finger binding to DNA consensus sequence [AT]GATA[AG];
152-194 1.05e-15

zinc finger binding to DNA consensus sequence [AT]GATA[AG];


Pssm-ID: 214648 [Multi-domain]  Cd Length: 52  Bit Score: 69.75  E-value: 1.05e-15
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 18409199    152 RRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRTTAAT 194
Cdd:smart00401   4 RSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGLKRPLS 46
GATA pfam00320
GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This ...
 154-185 8.22e-14

GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.


Pssm-ID: 425605 [Multi-domain]  Cd Length: 36  Bit Score: 64.26  E-value: 8.22e-14
                          10        20        30
                  ....*....|....*....|....*....|..
gi 18409199   154 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKK 185
Cdd:pfam00320   1 CSNCGTTKTPLWRRGPNGNRTLCNACGLYYKK 32
ZnF_GATA cd00202
Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] ...
 153-185 3.28e-12

Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C


Pssm-ID: 238123 [Multi-domain]  Cd Length: 54  Bit Score: 60.46  E-value: 3.28e-12
                        10        20        30
                ....*....|....*....|....*....|...
gi 18409199 153 RCANCDTTSTPLWRNGPRGPKSLCNACGIRFKK 185
Cdd:cd00202   1 ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKK 33
GAT1 COG5641
GATA Zn-finger-containing transcription factor [Transcription];
90-184 3.45e-03

GATA Zn-finger-containing transcription factor [Transcription];


Pssm-ID: 227928 [Multi-domain]  Cd Length: 498  Bit Score: 38.70  E-value: 3.45e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18409199  90 STSSGASSCISNfwDLIHTKNNNSKTAPYNNVPSFSANKPSRGCsgggggggggggGDSLLARRCANCDTTSTPLWRNGP 169
Cdd:COG5641 111 STSNAASPSTNY--TDESNQQFSSYNTTLNPGGTSSLNPNNNQS------------DNSNQPHVCSNCKTTSTPLWRRAS 176

                        90
                ....*....|....*....
gi 18409199 170 RGPKS----LCNACGIRFK 184
Cdd:COG5641 177 SESSLpgnnLCNACGLYLK 195
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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