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Conserved domains on  [gi|18416293|ref|NP_567696|]
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kinesin-like protein [Arabidopsis thaliana]

Protein Classification

DUF615 domain-containing protein( domain architecture ID 10520613)

DUF615 domain-containing protein similar to Escherichia coli YjgA

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DUF615 pfam04751
Protein of unknown function (DUF615); This family of bacterial proteins has no known function.
87-263 3.06e-31

Protein of unknown function (DUF615); This family of bacterial proteins has no known function.


:

Pssm-ID: 461418  Cd Length: 139  Bit Score: 113.77  E-value: 3.06e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416293    87 RSRNQRKRDARRAVKWGMELASFSGDQvkqiLKAASLGEEVYDALMLAKRLGSdvREGKRRHFNYIGKLLREVEPDLMDT 166
Cdd:pfam04751   3 PSKSQLKREALALQDLGEELVALSPDQ----LARLPLPEELRDAILEAKRITS--HEARRRQLQYIGKLMREVDPEPIRA 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416293   167 LINATKQGdhstlqtlisSAKDVADDvgdsydddtetesedeeegsdeytAMAARWFDGLISQNVELTKEVYSLQSvDFD 246
Cdd:pfam04751  77 ALDALKNK----------SRQETAAF------------------------HRLERWRDRLLADDDAALTELLEEYP-DAD 121
                         170
                  ....*....|....*..
gi 18416293   247 RQELRKLVRKVQLVHEQ 263
Cdd:pfam04751 122 RQQLRQLIRNARKEREA 138
 
Name Accession Description Interval E-value
DUF615 pfam04751
Protein of unknown function (DUF615); This family of bacterial proteins has no known function.
87-263 3.06e-31

Protein of unknown function (DUF615); This family of bacterial proteins has no known function.


Pssm-ID: 461418  Cd Length: 139  Bit Score: 113.77  E-value: 3.06e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416293    87 RSRNQRKRDARRAVKWGMELASFSGDQvkqiLKAASLGEEVYDALMLAKRLGSdvREGKRRHFNYIGKLLREVEPDLMDT 166
Cdd:pfam04751   3 PSKSQLKREALALQDLGEELVALSPDQ----LARLPLPEELRDAILEAKRITS--HEARRRQLQYIGKLMREVDPEPIRA 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416293   167 LINATKQGdhstlqtlisSAKDVADDvgdsydddtetesedeeegsdeytAMAARWFDGLISQNVELTKEVYSLQSvDFD 246
Cdd:pfam04751  77 ALDALKNK----------SRQETAAF------------------------HRLERWRDRLLADDDAALTELLEEYP-DAD 121
                         170
                  ....*....|....*..
gi 18416293   247 RQELRKLVRKVQLVHEQ 263
Cdd:pfam04751 122 RQQLRQLIRNARKEREA 138
YjgA-like cd16331
uncharacterized proteins similar to Escherichia coli YjgA; Family of conserved uncharacterized ...
88-265 2.41e-26

uncharacterized proteins similar to Escherichia coli YjgA; Family of conserved uncharacterized proteins similar to Escherichia coli YjgA, which has been identified as comigrating with the 50S ribosome


Pssm-ID: 319991  Cd Length: 153  Bit Score: 101.38  E-value: 2.41e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416293  88 SRNQRKRDARRAVKWGMELASFSGDQVKQIlkaaSLGEEVYDALMLAKRLGSdvREGKRRHFNYIGKLLREVEPDLMDTL 167
Cdd:cd16331   3 SKSQLKREAHALQDLGEELVELSPAQLAKL----PLPEELREAILEAKRIKS--HEARRRQLQYIGKLMRDEDPEAIRAA 76
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416293 168 INATKQGDHSTLQTLissakdvaddvgdsydddtetesedeeegsdeytAMAARWFDGLISQNVELTKEVYSLQSvDFDR 247
Cdd:cd16331  77 LDALKNGSRAENARF----------------------------------HRLERWRDRLIAEGDAALTELLAEYP-DADR 121
                       170
                ....*....|....*...
gi 18416293 248 QELRKLVRKVQLVHEQRK 265
Cdd:cd16331 122 QQLRQLIRNARKEREANK 139
PRK05255 PRK05255
ribosome-associated protein;
73-173 1.97e-15

ribosome-associated protein;


Pssm-ID: 235377  Cd Length: 171  Bit Score: 72.57  E-value: 1.97e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416293   73 EEDGDNDGYESDSLRSRNQRKRDARRAVKWGMELASFSGDQVKQIlkaaSLGEEVYDALMLAKRLGSdvREGKRRHFNYI 152
Cdd:PRK05255   3 PMRDPEEEDDEIIWVSKSQIKRDAEALQDLGEELVELSKDQLAKL----PLDEDLRDAILEAQRITS--HEARRRQLQYI 76
                         90       100
                 ....*....|....*....|....*
gi 18416293  153 GKLLREVEPD----LMDTLINATKQ 173
Cdd:PRK05255  77 GKLMRNEDVEpiraALDKLKNKHNQ 101
YjgA COG3028
Ribosomal 50S subunit-associated protein YjgA, DUF615 family [Translation, ribosomal structure ...
82-258 1.28e-13

Ribosomal 50S subunit-associated protein YjgA, DUF615 family [Translation, ribosomal structure and biogenesis];


Pssm-ID: 442264  Cd Length: 174  Bit Score: 67.50  E-value: 1.28e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416293  82 ESDSLRSRNQRKRDARRAVKWGMELASFSGDQVKQIlkaaSLGEEVYDALMLAKRLGSdvREGKRRHFNYIGKLLREVEP 161
Cdd:COG3028  11 EEDERPSKSQLKREMHALQDLGEELVELSPDQLAKL----PLPEDLRDAIAEARRITK--HEARRRQLQYIGKLMRREDL 84
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416293 162 DLMDTLINATKQGdhstlqtlisSAKDVADDVgdsydddtetesedeeegsdeytaMAARWFDGLISQNVE-LTK--EVY 238
Cdd:COG3028  85 EPIRAALDKLKNG----------SAQETAAFH------------------------RLERWRDRLIAEGDDaLTEllEEY 130
                       170       180
                ....*....|....*....|
gi 18416293 239 SlqsvDFDRQELRKLVRKVQ 258
Cdd:COG3028 131 P----QADRQQLRQLIRNAR 146
 
Name Accession Description Interval E-value
DUF615 pfam04751
Protein of unknown function (DUF615); This family of bacterial proteins has no known function.
87-263 3.06e-31

Protein of unknown function (DUF615); This family of bacterial proteins has no known function.


Pssm-ID: 461418  Cd Length: 139  Bit Score: 113.77  E-value: 3.06e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416293    87 RSRNQRKRDARRAVKWGMELASFSGDQvkqiLKAASLGEEVYDALMLAKRLGSdvREGKRRHFNYIGKLLREVEPDLMDT 166
Cdd:pfam04751   3 PSKSQLKREALALQDLGEELVALSPDQ----LARLPLPEELRDAILEAKRITS--HEARRRQLQYIGKLMREVDPEPIRA 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416293   167 LINATKQGdhstlqtlisSAKDVADDvgdsydddtetesedeeegsdeytAMAARWFDGLISQNVELTKEVYSLQSvDFD 246
Cdd:pfam04751  77 ALDALKNK----------SRQETAAF------------------------HRLERWRDRLLADDDAALTELLEEYP-DAD 121
                         170
                  ....*....|....*..
gi 18416293   247 RQELRKLVRKVQLVHEQ 263
Cdd:pfam04751 122 RQQLRQLIRNARKEREA 138
YjgA-like cd16331
uncharacterized proteins similar to Escherichia coli YjgA; Family of conserved uncharacterized ...
88-265 2.41e-26

uncharacterized proteins similar to Escherichia coli YjgA; Family of conserved uncharacterized proteins similar to Escherichia coli YjgA, which has been identified as comigrating with the 50S ribosome


Pssm-ID: 319991  Cd Length: 153  Bit Score: 101.38  E-value: 2.41e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416293  88 SRNQRKRDARRAVKWGMELASFSGDQVKQIlkaaSLGEEVYDALMLAKRLGSdvREGKRRHFNYIGKLLREVEPDLMDTL 167
Cdd:cd16331   3 SKSQLKREAHALQDLGEELVELSPAQLAKL----PLPEELREAILEAKRIKS--HEARRRQLQYIGKLMRDEDPEAIRAA 76
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416293 168 INATKQGDHSTLQTLissakdvaddvgdsydddtetesedeeegsdeytAMAARWFDGLISQNVELTKEVYSLQSvDFDR 247
Cdd:cd16331  77 LDALKNGSRAENARF----------------------------------HRLERWRDRLIAEGDAALTELLAEYP-DADR 121
                       170
                ....*....|....*...
gi 18416293 248 QELRKLVRKVQLVHEQRK 265
Cdd:cd16331 122 QQLRQLIRNARKEREANK 139
PRK05255 PRK05255
ribosome-associated protein;
73-173 1.97e-15

ribosome-associated protein;


Pssm-ID: 235377  Cd Length: 171  Bit Score: 72.57  E-value: 1.97e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416293   73 EEDGDNDGYESDSLRSRNQRKRDARRAVKWGMELASFSGDQVKQIlkaaSLGEEVYDALMLAKRLGSdvREGKRRHFNYI 152
Cdd:PRK05255   3 PMRDPEEEDDEIIWVSKSQIKRDAEALQDLGEELVELSKDQLAKL----PLDEDLRDAILEAQRITS--HEARRRQLQYI 76
                         90       100
                 ....*....|....*....|....*
gi 18416293  153 GKLLREVEPD----LMDTLINATKQ 173
Cdd:PRK05255  77 GKLMRNEDVEpiraALDKLKNKHNQ 101
YjgA COG3028
Ribosomal 50S subunit-associated protein YjgA, DUF615 family [Translation, ribosomal structure ...
82-258 1.28e-13

Ribosomal 50S subunit-associated protein YjgA, DUF615 family [Translation, ribosomal structure and biogenesis];


Pssm-ID: 442264  Cd Length: 174  Bit Score: 67.50  E-value: 1.28e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416293  82 ESDSLRSRNQRKRDARRAVKWGMELASFSGDQVKQIlkaaSLGEEVYDALMLAKRLGSdvREGKRRHFNYIGKLLREVEP 161
Cdd:COG3028  11 EEDERPSKSQLKREMHALQDLGEELVELSPDQLAKL----PLPEDLRDAIAEARRITK--HEARRRQLQYIGKLMRREDL 84
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18416293 162 DLMDTLINATKQGdhstlqtlisSAKDVADDVgdsydddtetesedeeegsdeytaMAARWFDGLISQNVE-LTK--EVY 238
Cdd:COG3028  85 EPIRAALDKLKNG----------SAQETAAFH------------------------RLERWRDRLIAEGDDaLTEllEEY 130
                       170       180
                ....*....|....*....|
gi 18416293 239 SlqsvDFDRQELRKLVRKVQ 258
Cdd:COG3028 131 P----QADRQQLRQLIRNAR 146
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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