NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|18420175|ref|NP_568035|]
View 

CURVATURE THYLAKOID 1D-like protein [Arabidopsis thaliana]

Protein Classification

CAAD domain-containing protein( domain architecture ID 10624445)

CAAD domain-containing protein such as Arabidopsis thaliana CURVATURE THYLAKOID1 proteins that modify thylakoid architecture by inducing membrane curvature

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
CAAD pfam14159
CAAD domains of cyanobacterial aminoacyl-tRNA synthetase; This domain is present in ...
 105-189 1.33e-27

CAAD domains of cyanobacterial aminoacyl-tRNA synthetase; This domain is present in aminoacyl-tRNA synthetases (aaRSs), enzymes that couple tRNAs to their cognate amino acids. aaRSs from cyanobacteria containing the CAAD (for cyanobacterial aminoacyl-tRNA synthetases appended domain) protein domains are localized in the thylakoid membrane. The domain bears two putative transmembrane helices and is present in glutamyl-, isoleucyl-, leucyl-, and valyl-tRNA synthetases, the latter of which has probably recruited the domain more than once during evolution.


:

Pssm-ID: 433752  Cd Length: 85  Bit Score: 99.52  E-value: 1.33e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18420175   105 EFLNDIKLDSDKTYSILLYGSGAIVALYLTSAIVSSLEAIPLFPKLMEVVGLGYTLWFTTRYLLFKRNREELKTKVSEIK 184
Cdd:pfam14159   1 KYVGEFWSQYKQPLAVVGLIIAAIVALKLALAVLDAIDSIPLLPPLLELVGLGYTGWFVYRYLLFAEDRQELVQKIKSLK 80


                  ....*
gi 18420175   185 KQVLG 189
Cdd:pfam14159  81 KEILG 85
 
Name Accession Description Interval E-value
CAAD pfam14159
CAAD domains of cyanobacterial aminoacyl-tRNA synthetase; This domain is present in ...
 105-189 1.33e-27

CAAD domains of cyanobacterial aminoacyl-tRNA synthetase; This domain is present in aminoacyl-tRNA synthetases (aaRSs), enzymes that couple tRNAs to their cognate amino acids. aaRSs from cyanobacteria containing the CAAD (for cyanobacterial aminoacyl-tRNA synthetases appended domain) protein domains are localized in the thylakoid membrane. The domain bears two putative transmembrane helices and is present in glutamyl-, isoleucyl-, leucyl-, and valyl-tRNA synthetases, the latter of which has probably recruited the domain more than once during evolution.


Pssm-ID: 433752  Cd Length: 85  Bit Score: 99.52  E-value: 1.33e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18420175   105 EFLNDIKLDSDKTYSILLYGSGAIVALYLTSAIVSSLEAIPLFPKLMEVVGLGYTLWFTTRYLLFKRNREELKTKVSEIK 184
Cdd:pfam14159   1 KYVGEFWSQYKQPLAVVGLIIAAIVALKLALAVLDAIDSIPLLPPLLELVGLGYTGWFVYRYLLFAEDRQELVQKIKSLK 80


                  ....*
gi 18420175   185 KQVLG 189
Cdd:pfam14159  81 KEILG 85
PLN02777 PLN02777
photosystem I P subunit (PSI-P)
 92-190 1.50e-16

photosystem I P subunit (PSI-P)


Pssm-ID: 178376  Cd Length: 167  Bit Score: 73.11  E-value: 1.50e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18420175   92 EAPqAEDEETQALEFLNDIKLDSDKT---YSILLYGSGAIVALYLTSAIVSSLEAIPLFPKLMEVVGLGYTLWFTTRYLL 168
Cdd:PLN02777  66 EAP-AEVETTELPEIVKTVQEAWDKVedkYAVSSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLV 144

                         90       100
                 ....*....|....*....|..
gi 18420175  169 FKRNREELKTKVSEIKKQVLGS 190
Cdd:PLN02777 145 FKPDREALIEKIKDTYKEIIGS 166
 
Name Accession Description Interval E-value
CAAD pfam14159
CAAD domains of cyanobacterial aminoacyl-tRNA synthetase; This domain is present in ...
 105-189 1.33e-27

CAAD domains of cyanobacterial aminoacyl-tRNA synthetase; This domain is present in aminoacyl-tRNA synthetases (aaRSs), enzymes that couple tRNAs to their cognate amino acids. aaRSs from cyanobacteria containing the CAAD (for cyanobacterial aminoacyl-tRNA synthetases appended domain) protein domains are localized in the thylakoid membrane. The domain bears two putative transmembrane helices and is present in glutamyl-, isoleucyl-, leucyl-, and valyl-tRNA synthetases, the latter of which has probably recruited the domain more than once during evolution.


Pssm-ID: 433752  Cd Length: 85  Bit Score: 99.52  E-value: 1.33e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18420175   105 EFLNDIKLDSDKTYSILLYGSGAIVALYLTSAIVSSLEAIPLFPKLMEVVGLGYTLWFTTRYLLFKRNREELKTKVSEIK 184
Cdd:pfam14159   1 KYVGEFWSQYKQPLAVVGLIIAAIVALKLALAVLDAIDSIPLLPPLLELVGLGYTGWFVYRYLLFAEDRQELVQKIKSLK 80


                  ....*
gi 18420175   185 KQVLG 189
Cdd:pfam14159  81 KEILG 85
PLN02777 PLN02777
photosystem I P subunit (PSI-P)
 92-190 1.50e-16

photosystem I P subunit (PSI-P)


Pssm-ID: 178376  Cd Length: 167  Bit Score: 73.11  E-value: 1.50e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18420175   92 EAPqAEDEETQALEFLNDIKLDSDKT---YSILLYGSGAIVALYLTSAIVSSLEAIPLFPKLMEVVGLGYTLWFTTRYLL 168
Cdd:PLN02777  66 EAP-AEVETTELPEIVKTVQEAWDKVedkYAVSSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLV 144

                         90       100
                 ....*....|....*....|..
gi 18420175  169 FKRNREELKTKVSEIKKQVLGS 190
Cdd:PLN02777 145 FKPDREALIEKIKDTYKEIIGS 166
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH