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Conserved domains on  [gi|18418364|ref|NP_568353|]
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uncharacterized protein AT5G17610 [Arabidopsis thaliana]

Protein Classification

DUF4787 domain-containing protein( domain architecture ID 11240394)

DUF4787 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4787 pfam16029
Domain of unknown function (DUF4787); This presumed domain is functionally uncharacterized. ...
 36-104 7.76e-22

Domain of unknown function (DUF4787); This presumed domain is functionally uncharacterized. This domain family is found in eukaryotes, and is approximately 70 amino acids in length.


:

Pssm-ID: 464984  Cd Length: 62  Bit Score: 81.57  E-value: 7.76e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18418364    36 DVEIRQKKSECYGDIEsglwgwqCKSS-AIAKENCALRCLSPVCYQLIYESDPLEEGEKDlIRSQEYKYC 104
Cdd:pfam16029   1 DIEIREKEAACEQDIE-------CGSSgGIAKENCVRRCVSPSCYQEIYASDPLEEGEID-VRLNSFKGC 62
 
Name Accession Description Interval E-value
DUF4787 pfam16029
Domain of unknown function (DUF4787); This presumed domain is functionally uncharacterized. ...
 36-104 7.76e-22

Domain of unknown function (DUF4787); This presumed domain is functionally uncharacterized. This domain family is found in eukaryotes, and is approximately 70 amino acids in length.


Pssm-ID: 464984  Cd Length: 62  Bit Score: 81.57  E-value: 7.76e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18418364    36 DVEIRQKKSECYGDIEsglwgwqCKSS-AIAKENCALRCLSPVCYQLIYESDPLEEGEKDlIRSQEYKYC 104
Cdd:pfam16029   1 DIEIREKEAACEQDIE-------CGSSgGIAKENCVRRCVSPSCYQEIYASDPLEEGEID-VRLNSFKGC 62
 
Name Accession Description Interval E-value
DUF4787 pfam16029
Domain of unknown function (DUF4787); This presumed domain is functionally uncharacterized. ...
 36-104 7.76e-22

Domain of unknown function (DUF4787); This presumed domain is functionally uncharacterized. This domain family is found in eukaryotes, and is approximately 70 amino acids in length.


Pssm-ID: 464984  Cd Length: 62  Bit Score: 81.57  E-value: 7.76e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18418364    36 DVEIRQKKSECYGDIEsglwgwqCKSS-AIAKENCALRCLSPVCYQLIYESDPLEEGEKDlIRSQEYKYC 104
Cdd:pfam16029   1 DIEIREKEAACEQDIE-------CGSSgGIAKENCVRRCVSPSCYQEIYASDPLEEGEID-VRLNSFKGC 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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