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Conserved domains on  [gi|665391968|ref|NP_573175|]
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RNA polymerase III subunit I, isoform C [Drosophila melanogaster]

Protein Classification

Rpb4/RPC9 family DNA-directed RNA polymerase subunit( domain architecture ID 10511130)

Rpb4/RPC9 family DNA-directed RNA polymerase subunit similar to Saccharomyces cerevisiae DNA-directed RNA polymerase III subunit RPC9, a peripheral component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs

CATH:  1.10.287.2350
EC:  2.7.7.6
Gene Ontology:  GO:0006352|GO:0000166|GO:0030880

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RNA_pol_Rpb4 pfam03874
RNA polymerase Rpb4; This family includes the Rpb4 protein. This family also includes C17 (aka ...
 10-112 1.12e-12

RNA polymerase Rpb4; This family includes the Rpb4 protein. This family also includes C17 (aka CGRP-RCP) is an essential subunit of RNA polymerase III. C17 forms a subcomplex with C25 which is likely to be the counterpart of subcomplex Rpb4/7 in Pol II.


:

Pssm-ID: 461080  Cd Length: 115  Bit Score: 62.59  E-value: 1.12e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665391968   10 YLTNLEVMQILQK--------IKSTKKKFGMRNLATVTYEALQYLEeSPCKTQTRENIMNYVKDLSSYRLKSQEILQMIN 81
Cdd:pfam03874   1 FLSNSEVLLLLKKeleerrnwDFKEEKEDVPPNLNTILRKTLDYLN-RFSRLKNEEAFKELVELLNEFELTKAEKLQIVN 79

                          90       100       110
                  ....*....|....*....|....*....|.
gi 665391968   82 DPPTSALHTQLLIDDNKAPLTDEENEKIIQL 112
Cdd:pfam03874  80 LLPEDAVELYALIESLEERFTEEELEEILDE 110
PRK07003 super family cl35530
DNA polymerase III subunit gamma/tau;
122-223 1.58e-05

DNA polymerase III subunit gamma/tau;


The actual alignment was detected with superfamily member PRK07003:

Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 45.61  E-value: 1.58e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665391968 122 TKGAAKETPAEKPAESTAKAGKQSGvKRNAQAKSNPAEQIAPADKTTPGDGVTPANVATPSSEATTTTPAEEASPVETSS 201
Cdd:PRK07003 440 DDAADGDAPVPAKANARASADSRCD-ERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASR 518

                         90       100
                 ....*....|....*....|....*.
gi 665391968 202 SENNATPANEATTA----PATDAPTS 223
Cdd:PRK07003 519 EDAPAAAAPPAPEArpptPAAAAPAA 544
 
Name Accession Description Interval E-value
RNA_pol_Rpb4 pfam03874
RNA polymerase Rpb4; This family includes the Rpb4 protein. This family also includes C17 (aka ...
 10-112 1.12e-12

RNA polymerase Rpb4; This family includes the Rpb4 protein. This family also includes C17 (aka CGRP-RCP) is an essential subunit of RNA polymerase III. C17 forms a subcomplex with C25 which is likely to be the counterpart of subcomplex Rpb4/7 in Pol II.


Pssm-ID: 461080  Cd Length: 115  Bit Score: 62.59  E-value: 1.12e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665391968   10 YLTNLEVMQILQK--------IKSTKKKFGMRNLATVTYEALQYLEeSPCKTQTRENIMNYVKDLSSYRLKSQEILQMIN 81
Cdd:pfam03874   1 FLSNSEVLLLLKKeleerrnwDFKEEKEDVPPNLNTILRKTLDYLN-RFSRLKNEEAFKELVELLNEFELTKAEKLQIVN 79

                          90       100       110
                  ....*....|....*....|....*....|.
gi 665391968   82 DPPTSALHTQLLIDDNKAPLTDEENEKIIQL 112
Cdd:pfam03874  80 LLPEDAVELYALIESLEERFTEEELEEILDE 110
RPOL4c smart00657
DNA-directed RNA-polymerase II subunit;
11-111 2.86e-07

DNA-directed RNA-polymerase II subunit;


Pssm-ID: 128904  Cd Length: 118  Bit Score: 47.73  E-value: 2.86e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665391968    11 LTNLEVMQIL---QKIKSTKKKfgMRNLATVTYEALQYLEESPcKTQTRENIMNYVKDLSSYRLKSQEILQMINDPPTSA 87
Cdd:smart00657   9 LTNSEVQLLLelkRQSKESEEE--QQPLSTVMKKTLKYLSKFA-RFKNREIVRAVRTLLKSKKLHKFEIAQLGNLRPETA 85

                           90       100
                   ....*....|....*....|....
gi 665391968    88 LHTQLLIDDNKAPLTDEENEKIIQ 111
Cdd:smart00657  86 EEAQLLIPSLEERIDEEELEELLD 109
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
122-223 1.58e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 45.61  E-value: 1.58e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665391968 122 TKGAAKETPAEKPAESTAKAGKQSGvKRNAQAKSNPAEQIAPADKTTPGDGVTPANVATPSSEATTTTPAEEASPVETSS 201
Cdd:PRK07003 440 DDAADGDAPVPAKANARASADSRCD-ERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASR 518

                         90       100
                 ....*....|....*....|....*.
gi 665391968 202 SENNATPANEATTA----PATDAPTS 223
Cdd:PRK07003 519 EDAPAAAAPPAPEArpptPAAAAPAA 544
Neisseria_TspB pfam05616
Neisseria meningitidis TspB protein; This family consists of several Neisseria meningitidis ...
 149-235 1.09e-03

Neisseria meningitidis TspB protein; This family consists of several Neisseria meningitidis TspB virulence factor proteins.


Pssm-ID: 283306 [Multi-domain]  Cd Length: 517  Bit Score: 39.69  E-value: 1.09e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665391968  149 RNAQAKSNPAEQIAPADKTTPGdgvtpanvatpSSEATTTTPAEEASPVETSSseNNATPANEATTAPATDAPTSMETKS 228
Cdd:pfam05616 312 RDAQGNTTADVQVIPRPDLTPA-----------SAEAPHAQPLPEVSPAENPA--NNPDPDENPGTRPNPEPDPDLNPDA 378


                  ....*..
gi 665391968  229 NPTPDGE 235
Cdd:pfam05616 379 NPDTDGQ 385
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 124-232 3.39e-03

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 38.29  E-value: 3.39e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665391968 124 GAAKETPAEKpaeSTAKAGKQSGVKRNAQAKSNPAEQIAPADkTTPGDGVTPANVATPSSEATTTTPAEEASPVETssse 203
Cdd:COG3266  252 GSALKAPSQA---SSASAPATTSLGEQQEVSLPPAVAAQPAA-AAAAQPSAVALPAAPAAAAAAAAPAEAAAPQPT---- 323

                         90       100
                 ....*....|....*....|....*....
gi 665391968 204 nNATPANEATTAPATDAPTSMETKSNPTP 232
Cdd:COG3266  324 -AAKPVVTETAAPAAPAPEAAAAAAAPAA 351
 
Name Accession Description Interval E-value
RNA_pol_Rpb4 pfam03874
RNA polymerase Rpb4; This family includes the Rpb4 protein. This family also includes C17 (aka ...
 10-112 1.12e-12

RNA polymerase Rpb4; This family includes the Rpb4 protein. This family also includes C17 (aka CGRP-RCP) is an essential subunit of RNA polymerase III. C17 forms a subcomplex with C25 which is likely to be the counterpart of subcomplex Rpb4/7 in Pol II.


Pssm-ID: 461080  Cd Length: 115  Bit Score: 62.59  E-value: 1.12e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665391968   10 YLTNLEVMQILQK--------IKSTKKKFGMRNLATVTYEALQYLEeSPCKTQTRENIMNYVKDLSSYRLKSQEILQMIN 81
Cdd:pfam03874   1 FLSNSEVLLLLKKeleerrnwDFKEEKEDVPPNLNTILRKTLDYLN-RFSRLKNEEAFKELVELLNEFELTKAEKLQIVN 79

                          90       100       110
                  ....*....|....*....|....*....|.
gi 665391968   82 DPPTSALHTQLLIDDNKAPLTDEENEKIIQL 112
Cdd:pfam03874  80 LLPEDAVELYALIESLEERFTEEELEEILDE 110
RPOL4c smart00657
DNA-directed RNA-polymerase II subunit;
11-111 2.86e-07

DNA-directed RNA-polymerase II subunit;


Pssm-ID: 128904  Cd Length: 118  Bit Score: 47.73  E-value: 2.86e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665391968    11 LTNLEVMQIL---QKIKSTKKKfgMRNLATVTYEALQYLEESPcKTQTRENIMNYVKDLSSYRLKSQEILQMINDPPTSA 87
Cdd:smart00657   9 LTNSEVQLLLelkRQSKESEEE--QQPLSTVMKKTLKYLSKFA-RFKNREIVRAVRTLLKSKKLHKFEIAQLGNLRPETA 85

                           90       100
                   ....*....|....*....|....
gi 665391968    88 LHTQLLIDDNKAPLTDEENEKIIQ 111
Cdd:smart00657  86 EEAQLLIPSLEERIDEEELEELLD 109
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
122-223 1.58e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 45.61  E-value: 1.58e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665391968 122 TKGAAKETPAEKPAESTAKAGKQSGvKRNAQAKSNPAEQIAPADKTTPGDGVTPANVATPSSEATTTTPAEEASPVETSS 201
Cdd:PRK07003 440 DDAADGDAPVPAKANARASADSRCD-ERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASR 518

                         90       100
                 ....*....|....*....|....*.
gi 665391968 202 SENNATPANEATTA----PATDAPTS 223
Cdd:PRK07003 519 EDAPAAAAPPAPEArpptPAAAAPAA 544
PHA03247 PHA03247
large tegument protein UL36; Provisional
 130-232 7.14e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.77  E-value: 7.14e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665391968  130 PAEKPAESTAKAGKQSGVKRNAQAKSNPAEQIAPADKTTPGDGVTPANVATPSSEATTTTPAEEASPVETsssennATPA 209
Cdd:PHA03247 2706 PTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAP------AAGP 2779

                          90       100
                  ....*....|....*....|...
gi 665391968  210 NEATTAPATdAPTSMETKSNPTP 232
Cdd:PHA03247 2780 PRRLTRPAV-ASLSESRESLPSP 2801
PRK13108 PRK13108
prolipoprotein diacylglyceryl transferase; Reviewed
 122-233 1.67e-04

prolipoprotein diacylglyceryl transferase; Reviewed


Pssm-ID: 237284 [Multi-domain]  Cd Length: 460  Bit Score: 42.27  E-value: 1.67e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665391968 122 TKGAAKETPAEKPAES-----TAKAGKQSGVKRNAQAKSNPAEQIAPADKTTPG--DGVTPANVATPSSEATTTTPAEEA 194
Cdd:PRK13108 308 VASAASAVGPVGPGEPnqpddVAEAVKAEVAEVTDEVAAESVVQVADRDGESTPavEETSEADIEREQPGDLAGQAPAAH 387

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 665391968 195 SPVETSSSENNATPANEATTAPATDAPTSMEtKSNPTPD 233
Cdd:PRK13108 388 QVDAEAASAAPEEPAALASEAHDETEPEVPE-KAAPIPD 425
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 119-235 1.73e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 42.39  E-value: 1.73e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665391968 119 GGETKGAAKETPAEKPAESTAKAgkqsgvkRNAQAKSNPAEQIAPADKT----TPGDGVTPANVATPSSEATTTTPAEEA 194
Cdd:PRK14951 370 AEAAAPAEKKTPARPEAAAPAAA-------PVAQAAAAPAPAAAPAAAAsapaAPPAAAPPAPVAAPAAAAPAAAPAAAP 442

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 665391968 195 SPV------------ETSSSENNATPANEATTAPATDAPTSMETKSNPTPDGE 235
Cdd:PRK14951 443 AAValapappaqaapETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEEGD 495
PRK10856 PRK10856
cytoskeleton protein RodZ;
150-237 2.99e-04

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 41.17  E-value: 2.99e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665391968 150 NAQAKSNPAEQIAPADKTTPGDGVTPANVATPSSEATTTTPAEEASPVETSSSENNATPANEATTAPATDAPTSMETKSN 229
Cdd:PRK10856 167 STTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGVST 246


                 ....*...
gi 665391968 230 PTPDGENL 237
Cdd:PRK10856 247 PAADPNAL 254
PRK08691 PRK08691
DNA polymerase III subunits gamma and tau; Validated
 99-233 4.36e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236333 [Multi-domain]  Cd Length: 709  Bit Score: 41.23  E-value: 4.36e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665391968  99 APLTDEENEKIIQLSYKHFHGGETKGAAKETPAEKPAESTAKAGKQSGVKRNAQAKSNPAEQIA-PADKTTPGDGvtPAN 177
Cdd:PRK08691 359 APLAAASCDANAVIENTELQSPSAQTAEKETAAKKPQPRPEAETAQTPVQTASAAAMPSEGKTAgPVSNQENNDV--PPW 436

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 665391968 178 VATPSSEATTTTPAEEASPVETSSSENNATPANEATTAPATDAPTSMETKSNPTPD 233
Cdd:PRK08691 437 EDAPDEAQTAAGTAQTSAKSIQTASEAETPPENQVSKNKAADNETDAPLSEVPSEN 492
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
125-223 5.88e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 40.60  E-value: 5.88e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665391968 125 AAKETPAEKPAESTAKAGKQSGVKRNAQAKSNPAEQIAPAD---KTTPGDGVTPANVATPSSEATTTTPAEEASPVETSS 201
Cdd:PRK07003 427 PAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDaqpPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAA 506

                         90       100
                 ....*....|....*....|....*.
gi 665391968 202 SENNATPA----NEATTAPATDAPTS 223
Cdd:PRK07003 507 VPDARAPAaasrEDAPAAAAPPAPEA 532
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
124-235 6.67e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 40.60  E-value: 6.67e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665391968 124 GAAKETPAEKPAESTAKAGKQSGVKRNAQAKSNPAEQIAPADKTTPGDGVTPANVA-----TPSSEATTTTPAEEASPVE 198
Cdd:PRK07003 381 PAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATAdrgddAADGDAPVPAKANARASAD 460

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 665391968 199 TSSSENNATPANEATT--APATDAPTSMETKSNPTPDGE 235
Cdd:PRK07003 461 SRCDERDAQPPADSGSasAPASDAPPDAAFEPAPRAAAP 499
Neisseria_TspB pfam05616
Neisseria meningitidis TspB protein; This family consists of several Neisseria meningitidis ...
 149-235 1.09e-03

Neisseria meningitidis TspB protein; This family consists of several Neisseria meningitidis TspB virulence factor proteins.


Pssm-ID: 283306 [Multi-domain]  Cd Length: 517  Bit Score: 39.69  E-value: 1.09e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665391968  149 RNAQAKSNPAEQIAPADKTTPGdgvtpanvatpSSEATTTTPAEEASPVETSSseNNATPANEATTAPATDAPTSMETKS 228
Cdd:pfam05616 312 RDAQGNTTADVQVIPRPDLTPA-----------SAEAPHAQPLPEVSPAENPA--NNPDPDENPGTRPNPEPDPDLNPDA 378


                  ....*..
gi 665391968  229 NPTPDGE 235
Cdd:pfam05616 379 NPDTDGQ 385
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
122-235 1.31e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 39.45  E-value: 1.31e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665391968 122 TKGAAKETPAEKPAESTAKAGKQSGVKRNAQAKSNPAEQIAPADKTTPGDGVTPANVATPSSEATTTTPAEEASPVETSS 201
Cdd:PRK07003 412 PKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFE 491

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 665391968 202 SENNATPANEATTAPATDA--PTSMETKSNPTPDGE 235
Cdd:PRK07003 492 PAPRAAAPSAATPAAVPDAraPAAASREDAPAAAAP 527
rne PRK10811
ribonuclease E; Reviewed
 156-232 1.41e-03

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 39.64  E-value: 1.41e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665391968  156 NPAEQIAPADKTTPGDGVTPANVATPSSEATTTTPAE----------EASPVETSSSENNATPANEATTA-PATDAPTSM 224
Cdd:PRK10811  861 AEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEpvvvaepqpeEVVVVETTHPEVIAAPVTEQPQViTESDVAVAQ 940


                  ....*...
gi 665391968  225 ETKSNPTP 232
Cdd:PRK10811  941 EVAEHAEP 948
PHA03247 PHA03247
large tegument protein UL36; Provisional
 119-234 2.51e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 38.77  E-value: 2.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665391968  119 GGETKGAAKETPAEKPAESTAKAGKQSGVKRNAQAKSNPAEQIAPADKTTPGDGVTPANVATPSSEATTTTPA-EEASPV 197
Cdd:PHA03247 2728 ARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSpWDPADP 2807

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 665391968  198 ETSSSENNATPANEATTAPATDAPTSMETKSNPTPDG 234
Cdd:PHA03247 2808 PAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPG 2844
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
125-222 3.21e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 38.32  E-value: 3.21e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665391968 125 AAKETPAEKPAESTAKAGKQSGVKRNAQAKSNPAEQIAPADKTTPGDGVTPANVATPSSEATTTTPAEEASPVETSSSEN 204
Cdd:PRK12323 453 APAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATA 532

                         90
                 ....*....|....*...
gi 665391968 205 NATPANEATTAPATDAPT 222
Cdd:PRK12323 533 DPDDAFETLAPAPAAAPA 550
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 124-232 3.39e-03

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 38.29  E-value: 3.39e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665391968 124 GAAKETPAEKpaeSTAKAGKQSGVKRNAQAKSNPAEQIAPADkTTPGDGVTPANVATPSSEATTTTPAEEASPVETssse 203
Cdd:COG3266  252 GSALKAPSQA---SSASAPATTSLGEQQEVSLPPAVAAQPAA-AAAAQPSAVALPAAPAAAAAAAAPAEAAAPQPT---- 323

                         90       100
                 ....*....|....*....|....*....
gi 665391968 204 nNATPANEATTAPATDAPTSMETKSNPTP 232
Cdd:COG3266  324 -AAKPVVTETAAPAAPAPEAAAAAAAPAA 351
rpsP PRK14521
30S ribosomal protein S16; Provisional
 115-222 5.04e-03

30S ribosomal protein S16; Provisional


Pssm-ID: 237744 [Multi-domain]  Cd Length: 186  Bit Score: 36.68  E-value: 5.04e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665391968 115 KHFHGGETKGAAKETPAEKPAESTaKAGKQSGVKRNAQAKSNPAEqiapADKTTPGDGVTPANVAtpssEATTTTPAEEA 194
Cdd:PRK14521  83 KHLLGGVAKGAFTEAQAEAKFEAW-KEEKEGKVNAKKDKLSKAKK----AAKKAALEAEKKVNEA----RAEAVAEKKAA 153

                         90       100
                 ....*....|....*....|....*...
gi 665391968 195 SPVETSSSENNATPANEATTAPATDAPT 222
Cdd:PRK14521 154 EAAAVAAEEAAAAEEEEAEEAPAEEAPA 181
PRK12495 PRK12495
hypothetical protein; Provisional
 144-233 6.11e-03

hypothetical protein; Provisional


Pssm-ID: 183558 [Multi-domain]  Cd Length: 226  Bit Score: 36.77  E-value: 6.11e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665391968 144 QSGVKRNAQAKSNPAEQIAPADKTTPGDGVTPANVATPSSEATTTTPAEEASPVETSSSENnaTPANEATTAPATDAPTS 223
Cdd:PRK12495  65 QQPVTEDGAAGDDAGDGAEATAPSDAGSQASPDDDAQPAAEAEAADQSAPPEASSTSATDE--AATDPPATAAARDGPTP 142

                         90
                 ....*....|
gi 665391968 224 METKSNPTPD 233
Cdd:PRK12495 143 DPTAQPATPD 152
PHA03291 PHA03291
envelope glycoprotein I; Provisional
 158-232 7.75e-03

envelope glycoprotein I; Provisional


Pssm-ID: 223033 [Multi-domain]  Cd Length: 401  Bit Score: 36.86  E-value: 7.75e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 665391968 158 AEQIAPADKTTPgdgvtpanvATPSSEATTTTPAEEASPVETSSSENNATPANEATTAPATDAPTSMETKSNPTP 232
Cdd:PHA03291 194 APRLGPADVFVP---------ATPRPTPRTTASPETTPTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAP 259
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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