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Conserved domains on  [gi|429238879|ref|NP_588036|]
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NuA4 histone acetyltransferase complex scaffold subunit Vid21/Eaf1 [Schizosaccharomyces pombe]

Protein Classification

HSA domain-containing protein( domain architecture ID 10651729)

HSA domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
HSA smart00573
domain in helicases and associated with SANT domains;
476-548 2.08e-25

domain in helicases and associated with SANT domains;


:

Pssm-ID: 214727 [Multi-domain]  Cd Length: 73  Bit Score: 100.16  E-value: 2.08e-25
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 429238879   476 KRQNEMPRLKTHRDYVLDEMQWMSIDFSQERKWKIILAHRMANWVMDYHQASDKCTVCTPASLSKNKKPYMQE 548
Cdd:smart00573   1 QKLEEERRRKQHWDHLLEEMIWHAKDFKEEHKWKIAAAKKMAKAVMDYHQNKEKEEERREEKNEKRRLRKLAA 73
rne super family cl35953
ribonuclease E; Reviewed
152-305 1.02e-04

ribonuclease E; Reviewed


The actual alignment was detected with superfamily member PRK10811:

Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 46.57  E-value: 1.02e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429238879  152 PIPSPETiHKNIDVEEKETIEPTTPVKEVETTAHAEEEKGPLTPDS--EYAARQLTEELANKSSQE-----------EGV 218
Cdd:PRK10811  846 PVVRPQD-VQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAvaEVVEEPVVVAEPQPEEVVvvetthpeviaAPV 924
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429238879  219 DKQLRVVEATEKEHEEDGNEENVTVTKPVEVATDQVESKEVKKKEVSETTEPTAPPVTVAEVLEIEDKVPKVDEVEEVHS 298
Cdd:PRK10811  925 TEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPA 1004

                  ....*..
gi 429238879  299 PEAKVTE 305
Cdd:PRK10811 1005 QVPEATV 1011
 
Name Accession Description Interval E-value
HSA smart00573
domain in helicases and associated with SANT domains;
476-548 2.08e-25

domain in helicases and associated with SANT domains;


Pssm-ID: 214727 [Multi-domain]  Cd Length: 73  Bit Score: 100.16  E-value: 2.08e-25
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 429238879   476 KRQNEMPRLKTHRDYVLDEMQWMSIDFSQERKWKIILAHRMANWVMDYHQASDKCTVCTPASLSKNKKPYMQE 548
Cdd:smart00573   1 QKLEEERRRKQHWDHLLEEMIWHAKDFKEEHKWKIAAAKKMAKAVMDYHQNKEKEEERREEKNEKRRLRKLAA 73
HSA pfam07529
HSA domain; This domain is predicted to bind DNA and is often found associated with helicases. ...
477-543 3.06e-13

HSA domain; This domain is predicted to bind DNA and is often found associated with helicases. This region does not form a compact domain in the known structures.


Pssm-ID: 462194 [Multi-domain]  Cd Length: 67  Bit Score: 65.29  E-value: 3.06e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 429238879  477 RQNEMPRLKTHRDYVLDEMQWMSIDFSQERKWKIILAHRMANWVMDYHQASDKCTVCTPASLSKNKK 543
Cdd:pfam07529   1 RDEPERREKTHHDYLLEEILWHSKDFKQERRWKRARAKKLARAVAQYHKNIEKEEQKRIEREEKQRL 67
rne PRK10811
ribonuclease E; Reviewed
152-305 1.02e-04

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 46.57  E-value: 1.02e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429238879  152 PIPSPETiHKNIDVEEKETIEPTTPVKEVETTAHAEEEKGPLTPDS--EYAARQLTEELANKSSQE-----------EGV 218
Cdd:PRK10811  846 PVVRPQD-VQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAvaEVVEEPVVVAEPQPEEVVvvetthpeviaAPV 924
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429238879  219 DKQLRVVEATEKEHEEDGNEENVTVTKPVEVATDQVESKEVKKKEVSETTEPTAPPVTVAEVLEIEDKVPKVDEVEEVHS 298
Cdd:PRK10811  925 TEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPA 1004

                  ....*..
gi 429238879  299 PEAKVTE 305
Cdd:PRK10811 1005 QVPEATV 1011
 
Name Accession Description Interval E-value
HSA smart00573
domain in helicases and associated with SANT domains;
476-548 2.08e-25

domain in helicases and associated with SANT domains;


Pssm-ID: 214727 [Multi-domain]  Cd Length: 73  Bit Score: 100.16  E-value: 2.08e-25
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 429238879   476 KRQNEMPRLKTHRDYVLDEMQWMSIDFSQERKWKIILAHRMANWVMDYHQASDKCTVCTPASLSKNKKPYMQE 548
Cdd:smart00573   1 QKLEEERRRKQHWDHLLEEMIWHAKDFKEEHKWKIAAAKKMAKAVMDYHQNKEKEEERREEKNEKRRLRKLAA 73
HSA pfam07529
HSA domain; This domain is predicted to bind DNA and is often found associated with helicases. ...
477-543 3.06e-13

HSA domain; This domain is predicted to bind DNA and is often found associated with helicases. This region does not form a compact domain in the known structures.


Pssm-ID: 462194 [Multi-domain]  Cd Length: 67  Bit Score: 65.29  E-value: 3.06e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 429238879  477 RQNEMPRLKTHRDYVLDEMQWMSIDFSQERKWKIILAHRMANWVMDYHQASDKCTVCTPASLSKNKK 543
Cdd:pfam07529   1 RDEPERREKTHHDYLLEEILWHSKDFKQERRWKRARAKKLARAVAQYHKNIEKEEQKRIEREEKQRL 67
rne PRK10811
ribonuclease E; Reviewed
152-305 1.02e-04

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 46.57  E-value: 1.02e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429238879  152 PIPSPETiHKNIDVEEKETIEPTTPVKEVETTAHAEEEKGPLTPDS--EYAARQLTEELANKSSQE-----------EGV 218
Cdd:PRK10811  846 PVVRPQD-VQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAvaEVVEEPVVVAEPQPEEVVvvetthpeviaAPV 924
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429238879  219 DKQLRVVEATEKEHEEDGNEENVTVTKPVEVATDQVESKEVKKKEVSETTEPTAPPVTVAEVLEIEDKVPKVDEVEEVHS 298
Cdd:PRK10811  925 TEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPA 1004

                  ....*..
gi 429238879  299 PEAKVTE 305
Cdd:PRK10811 1005 QVPEATV 1011
PTZ00341 PTZ00341
Ring-infected erythrocyte surface antigen; Provisional
158-363 4.83e-04

Ring-infected erythrocyte surface antigen; Provisional


Pssm-ID: 173534 [Multi-domain]  Cd Length: 1136  Bit Score: 44.39  E-value: 4.83e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429238879  158 TIHKNIDVEEKETIEPTTPVKEVETTAHAEEekgpltpDSEYAARQLTEElanksSQEEGVDKQlrvVEATEKEHEEDGN 237
Cdd:PTZ00341  923 LINKELKNQNENVPEHLKEHAEANIEEDAEE-------NVEEDAEENVEE-----NVEENVEEN---VEENVEENVEENV 987
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 429238879  238 EENVTvtkpvEVATDQVES--KEVKKKEVSETTEPTAPPVTVAEVLEIEDKVPKVDEvEEVHSPEAKVTENDVENVQSGI 315
Cdd:PTZ00341  988 EENVE-----ENVEENVEEniEENVEENVEENIEENVEEYDEENVEEVEENVEEYDE-ENVEEIEENAEENVEENIEENI 1061
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 429238879  316 DIEKTIQLLNNQEIPSEQQIISVDKATESPVQEVAVDVNEKpVDEIVE 363
Cdd:PTZ00341 1062 EEYDEENVEEIEENIEENIEENVEENVEENVEEIEENVEEN-VEENAE 1108
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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