NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|19075560|ref|NP_588060|]
View 

Ino80 complex subunit Iec3 [Schizosaccharomyces pombe]

Protein Classification

Ino80_Iec3 superfamily-containing protein( domain architecture ID 147243)

Ino80_Iec3 superfamily-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Ino80_Iec3 super family cl20587
IEC3 subunit of the Ino80 complex, chromatin re-modelling; This is a family of fungal ...
 5-60 1.57e-08

IEC3 subunit of the Ino80 complex, chromatin re-modelling; This is a family of fungal chromatin re-modelling proteins found in one of the chromatin-central complexes, Ino80. The function was identified in Schizosaccharomyces pombe but there is no orthologue in S. cerevisiae.


The actual alignment was detected with superfamily member pfam14612:

Pssm-ID: 405318 [Multi-domain]  Cd Length: 231  Bit Score: 51.95  E-value: 1.57e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 19075560     5 KSFKRKYLKLRKSFDSVVLETEEI---EQKIAEISevyRRILLENAHLNDLLIDMNSTV 60
Cdd:pfam14612   1 KSFKKKYRKMKIKFEEKMRESESLfreEQRIEDLS---KRLQEQNDQLLDLLLDLNNSP 56
 
Name Accession Description Interval E-value
Ino80_Iec3 pfam14612
IEC3 subunit of the Ino80 complex, chromatin re-modelling; This is a family of fungal ...
 5-60 1.57e-08

IEC3 subunit of the Ino80 complex, chromatin re-modelling; This is a family of fungal chromatin re-modelling proteins found in one of the chromatin-central complexes, Ino80. The function was identified in Schizosaccharomyces pombe but there is no orthologue in S. cerevisiae.


Pssm-ID: 405318 [Multi-domain]  Cd Length: 231  Bit Score: 51.95  E-value: 1.57e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 19075560     5 KSFKRKYLKLRKSFDSVVLETEEI---EQKIAEISevyRRILLENAHLNDLLIDMNSTV 60
Cdd:pfam14612   1 KSFKKKYRKMKIKFEEKMRESESLfreEQRIEDLS---KRLQEQNDQLLDLLLDLNNSP 56
 
Name Accession Description Interval E-value
Ino80_Iec3 pfam14612
IEC3 subunit of the Ino80 complex, chromatin re-modelling; This is a family of fungal ...
 5-60 1.57e-08

IEC3 subunit of the Ino80 complex, chromatin re-modelling; This is a family of fungal chromatin re-modelling proteins found in one of the chromatin-central complexes, Ino80. The function was identified in Schizosaccharomyces pombe but there is no orthologue in S. cerevisiae.


Pssm-ID: 405318 [Multi-domain]  Cd Length: 231  Bit Score: 51.95  E-value: 1.57e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 19075560     5 KSFKRKYLKLRKSFDSVVLETEEI---EQKIAEISevyRRILLENAHLNDLLIDMNSTV 60
Cdd:pfam14612   1 KSFKKKYRKMKIKFEEKMRESESLfreEQRIEDLS---KRLQEQNDQLLDLLLDLNNSP 56
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH