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Conserved domains on  [gi|19075623|ref|NP_588123|]
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chaperone activator Sti1 [Schizosaccharomyces pombe]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
STI1 pfam17830
STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 ...
 139-193 1.97e-18

STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 protein.


:

Pssm-ID: 436075  Cd Length: 55  Bit Score: 79.14  E-value: 1.97e-18
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 19075623   139 DPKFMEKLASNPETASLLADSAFMAKLQKIQQNPGSIMAELNDPRMMKVIGMLMG 193
Cdd:pfam17830   1 DPELLAKLAANPETRALLSDPEFVAKLQQIQKNPSSLQQYMQDPRVMTKLGVLMG 55
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
339-566 3.34e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 81.59  E-value: 3.34e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623 339 AKALGRLGTTYQKRGDLVKAIDYYQRSLTehrtpdilsrlkdaekskelqdreayIDPDKAEESRVKGNELFKSGDFANA 418
Cdd:COG0457   8 AEAYNNLGLAYRRLGRYEEAIEDYEKALE--------------------------LDPDDAEALYNLGLAYLRLGRYEEA 61

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623 419 IKEYTEMTKRAPSDPRGFGNRAAAYLKVMAPAECIRDCNKAIELDPNFAKAYVRKAQALFMLKDYNKCIDACNEASEVDR 498
Cdd:COG0457  62 LADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDP 141

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 19075623 499 REPNTGKNLREIESQLSKCMSAMASQRQNETEEETMARIQKDPEVLGILQDPAMQAILGQARENPAAL 566
Cdd:COG0457 142 DDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRK 209
PLN03088 super family cl33632
SGT1, suppressor of G2 allele of SKP1; Provisional
 1-96 1.24e-14

SGT1, suppressor of G2 allele of SKP1; Provisional


The actual alignment was detected with superfamily member PLN03088:

Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 75.59  E-value: 1.24e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623    1 MAEELKAKGNAAFSKKDYKTAIDYFTQAIGLDERNHILYSNRSACYASEKDYADALKDATKCTELKPDWAKGWSRKGAAL 80
Cdd:PLN03088   1 MAKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTAC 80

                         90
                 ....*....|....*.
gi 19075623   81 HGLGDLDAARSAYEEG 96
Cdd:PLN03088  81 MKLEEYQTAKAALEKG 96
TPR_12 pfam13424
Tetratricopeptide repeat;
301-366 4.52e-08

Tetratricopeptide repeat;


:

Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 50.46  E-value: 4.52e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 19075623   301 LNNLAAAYFEADQLDDCIKTCEDAIEQGRELR-ADFKLIAKALGRLGTTYQKRGDLVKAIDYYQRSL 366
Cdd:pfam13424   6 LNNLAAVLRRLGRYDEALELLEKALEIARRLLgPDHPLTATTLLNLGRLYLELGRYEEALELLERAL 72
 
Name Accession Description Interval E-value
STI1 pfam17830
STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 ...
 139-193 1.97e-18

STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 protein.


Pssm-ID: 436075  Cd Length: 55  Bit Score: 79.14  E-value: 1.97e-18
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 19075623   139 DPKFMEKLASNPETASLLADSAFMAKLQKIQQNPGSIMAELNDPRMMKVIGMLMG 193
Cdd:pfam17830   1 DPELLAKLAANPETRALLSDPEFVAKLQQIQKNPSSLQQYMQDPRVMTKLGVLMG 55
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
339-566 3.34e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 81.59  E-value: 3.34e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623 339 AKALGRLGTTYQKRGDLVKAIDYYQRSLTehrtpdilsrlkdaekskelqdreayIDPDKAEESRVKGNELFKSGDFANA 418
Cdd:COG0457   8 AEAYNNLGLAYRRLGRYEEAIEDYEKALE--------------------------LDPDDAEALYNLGLAYLRLGRYEEA 61

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623 419 IKEYTEMTKRAPSDPRGFGNRAAAYLKVMAPAECIRDCNKAIELDPNFAKAYVRKAQALFMLKDYNKCIDACNEASEVDR 498
Cdd:COG0457  62 LADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDP 141

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 19075623 499 REPNTGKNLREIESQLSKCMSAMASQRQNETEEETMARIQKDPEVLGILQDPAMQAILGQARENPAAL 566
Cdd:COG0457 142 DDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRK 209
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 1-96 1.24e-14

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 75.59  E-value: 1.24e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623    1 MAEELKAKGNAAFSKKDYKTAIDYFTQAIGLDERNHILYSNRSACYASEKDYADALKDATKCTELKPDWAKGWSRKGAAL 80
Cdd:PLN03088   1 MAKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTAC 80

                         90
                 ....*....|....*.
gi 19075623   81 HGLGDLDAARSAYEEG 96
Cdd:PLN03088  81 MKLEEYQTAKAALEKG 96
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
2-110 2.00e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 73.12  E-value: 2.00e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623   2 AEELKAKGNAAFSKKDYKTAIDYFTQAIGLDERNHILYSNRSACYASEKDYADALKDATKCTELKPDWAKGWSRKGAALH 81
Cdd:COG0457   8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQ 87

                        90       100
                ....*....|....*....|....*....
gi 19075623  82 GLGDLDAARSAYEEGLKHDANNAQLLNGL 110
Cdd:COG0457  88 ALGRYEEALEDYDKALELDPDDAEALYNL 116
STI1 pfam17830
STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 ...
 531-584 7.71e-13

STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 protein.


Pssm-ID: 436075  Cd Length: 55  Bit Score: 63.35  E-value: 7.71e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 19075623   531 EETMARIQKDPEVLGILQDPAMQAILGQARENPAALMEHMKNPTVKSKIEKLIA 584
Cdd:pfam17830   2 PELLAKLAANPETRALLSDPEFVAKLQQIQKNPSSLQQYMQDPRVMTKLGVLMG 55
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 399-535 1.18e-12

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 69.43  E-value: 1.18e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623  399 AEESRVKGNELFKSGDFANAIKEYTEMTKRAPSDPRGFGNRAAAYLKVMAPAECIRDCNKAIELDPNFAKAYVRKAQALF 478
Cdd:PLN03088   2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM 81

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 19075623  479 MLKDYNKCIDACNEASEVDRREPNTGKNLREIESQLS--------KCMSAMASQRQNETEEETMA 535
Cdd:PLN03088  82 KLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAeeekdlvqPVPSDLPSSVTAPPVEEADA 146
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 2-84 4.25e-12

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 68.86  E-value: 4.25e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623     2 AEELKAKGNAAFSKKDYKTAIDYFTQAIGLDErNHILYSNRSACYASEKDYADALKDATKCTELKPDWAKGWSRKGAALH 81
Cdd:TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205


                  ...
gi 19075623    82 GLG 84
Cdd:TIGR00990 206 GLG 208
TPR_12 pfam13424
Tetratricopeptide repeat;
301-366 4.52e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 50.46  E-value: 4.52e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 19075623   301 LNNLAAAYFEADQLDDCIKTCEDAIEQGRELR-ADFKLIAKALGRLGTTYQKRGDLVKAIDYYQRSL 366
Cdd:pfam13424   6 LNNLAAVLRRLGRYDEALELLEKALEIARRLLgPDHPLTATTLLNLGRLYLELGRYEEALELLERAL 72
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 278-496 3.15e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 53.55  E-value: 3.15e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623   278 KRNFPVAIEQYKKAWDTYKDITYLN-NLAAAYFEADQLDDCIKTCEDAIEQGRELRADFKLiakalgrLGTTYQKRGDLV 356
Cdd:TIGR02917 648 MKNYAKAITSLKRALELKPDNTEAQiGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFEL-------EGDLYLRQKDYP 720

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623   357 KAIDYYQRSLTEHRTPDILSRLKDA-----EKSKELQDREAY--IDPDKAEESRVKGNELFKSGDFANAIKEYTEMTKRA 429
Cdd:TIGR02917 721 AAIQAYRKALKRAPSSQNAIKLHRAllasgNTAEAVKTLEAWlkTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKA 800

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 19075623   430 PSDPRGFGNRAAAYLKvMAPAECIRDCNKAIELDPN-------FAKAYVRKAQALFMLKDYNKCIDACNEASEV 496
Cdd:TIGR02917 801 PDNAVVLNNLAWLYLE-LKDPRALEYAERALKLAPNipaildtLGWLLVEKGEADRALPLLRKAVNIAPEAAAI 873
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 1-469 1.92e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 47.77  E-value: 1.92e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623     1 MAEELKAKGNAAFSKKDYKTAidyftQAIGLDERNHILYSNRSacYASEKDYADALKDATKCTEL-KPDWAKGWSRKGAA 79
Cdd:TIGR02917  62 LGKIYLALGDYAAAEKELRKA-----LSLGYPKNQVLPLLARA--YLLQGKFQQVLDELPGKTLLdDEGAAELLALRGLA 134

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623    80 LHGLGDLDAARSAYEEGLKHDANNAQLLNGLKSVEAAQTQAASGaggfnpfaklgSQLSDpkfmEKLASNPETA---SLL 156
Cdd:TIGR02917 135 YLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEA-----------RALID----EVLTADPGNVdalLLK 199

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623   157 ADSAFM---------AKLQKIQQNPGSIMAELNdprmmkvigmLMGIDINMNAGEGAAEEQEKKEEFAPSSstpsadsak 227
Cdd:TIGR02917 200 GDLLLSlgnielalaAYRKAIALRPNNIAVLLA----------LATILIEAGEFEEAEKHADALLKKAPNS--------- 260

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623   228 PETTnpppQPQASEPMEEDKTAEELEEAATkeALKKKADQ--EKQI-GNENYKKRNFPVAIEQYKKAWD-TYKDITYLNN 303
Cdd:TIGR02917 261 PLAH----YLKALVDFQKKNYEDARETLQD--ALKSAPEYlpALLLaGASEYQLGNLEQAYQYLNQILKyAPNSHQARRL 334

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623   304 LAAAYFEADQLDDCIKTCEDAIEQGRElradfklIAKALGRLGTTYQKRGDLVKAIDYYQRS------LTEHRTPDILSR 377
Cdd:TIGR02917 335 LASIQLRLGRVDEAIATLSPALGLDPD-------DPAALSLLGEAYLALGDFEKAAEYLAKAteldpeNAAARTQLGISK 407

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623   378 LKDAEKSKELQDRE--AYIDPDKAEESRVKGNELFKSGDFANAIKEYTEMTKRAPSDPRGFGNRAAAYLKVMAPAECIRD 455
Cdd:TIGR02917 408 LSQGDPSEAIADLEtaAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREA 487

                         490
                  ....*....|....
gi 19075623   456 CNKAIELDPNFAKA 469
Cdd:TIGR02917 488 FEKALSIEPDFFPA 501
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 276-369 5.56e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 42.67  E-value: 5.56e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623 276 YKKRNFPVAIEQYKKAWDTYKDITY----LNNLAAAYFEADQLDDCIKTCEDAIEQgrelRADFKLIAKALGRLGTTYQK 351
Cdd:COG1729   4 LKAGDYDEAIAAFKAFLKRYPNSPLapdaLYWLGEAYYALGDYDEAAEAFEKLLKR----YPDSPKAPDALLKLGLSYLE 79

                        90
                ....*....|....*...
gi 19075623 352 RGDLVKAIDYYQRSLTEH 369
Cdd:COG1729  80 LGDYDKARATLEELIKKY 97
STI1 smart00727
Heat shock chaperonin-binding motif;
540-579 1.20e-04

Heat shock chaperonin-binding motif;


Pssm-ID: 128966  Cd Length: 41  Bit Score: 39.56  E-value: 1.20e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 19075623    540 DPEVLGILQDPAMQAILGQARENPAALMEHMK-NPTVKSKI 579
Cdd:smart00727   1 DPEMALRLQNPQVQSLLQDMQQNPDMLAQMLQeNPQLLQLI 41
TPR_1 pfam00515
Tetratricopeptide repeat;
2-35 2.51e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.86  E-value: 2.51e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 19075623     2 AEELKAKGNAAFSKKDYKTAIDYFTQAIGLDERN 35
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 2-35 5.69e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 34.73  E-value: 5.69e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 19075623      2 AEELKAKGNAAFSKKDYKTAIDYFTQAIGLDERN 35
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
 
Name Accession Description Interval E-value
STI1 pfam17830
STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 ...
 139-193 1.97e-18

STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 protein.


Pssm-ID: 436075  Cd Length: 55  Bit Score: 79.14  E-value: 1.97e-18
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 19075623   139 DPKFMEKLASNPETASLLADSAFMAKLQKIQQNPGSIMAELNDPRMMKVIGMLMG 193
Cdd:pfam17830   1 DPELLAKLAANPETRALLSDPEFVAKLQQIQKNPSSLQQYMQDPRVMTKLGVLMG 55
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
339-566 3.34e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 81.59  E-value: 3.34e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623 339 AKALGRLGTTYQKRGDLVKAIDYYQRSLTehrtpdilsrlkdaekskelqdreayIDPDKAEESRVKGNELFKSGDFANA 418
Cdd:COG0457   8 AEAYNNLGLAYRRLGRYEEAIEDYEKALE--------------------------LDPDDAEALYNLGLAYLRLGRYEEA 61

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623 419 IKEYTEMTKRAPSDPRGFGNRAAAYLKVMAPAECIRDCNKAIELDPNFAKAYVRKAQALFMLKDYNKCIDACNEASEVDR 498
Cdd:COG0457  62 LADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDP 141

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 19075623 499 REPNTGKNLREIESQLSKCMSAMASQRQNETEEETMARIQKDPEVLGILQDPAMQAILGQARENPAAL 566
Cdd:COG0457 142 DDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRK 209
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
296-566 1.33e-15

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 76.58  E-value: 1.33e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623 296 KDITYLNNLAAAYFEADQLDDCIKTCEDAIEQGRELradfkliAKALGRLGTTYQKRGDLVKAIDYYQRSLTehrtpdil 375
Cdd:COG0457   6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDD-------AEALYNLGLAYLRLGRYEEALADYEQALE-------- 70

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623 376 srlkdaekskelqdreayIDPDKAEESRVKGNELFKSGDFANAIKEYTEMTKRAPSDPRGFGNRAAAYLKVMAPAECIRD 455
Cdd:COG0457  71 ------------------LDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEA 132

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623 456 CNKAIELDPNFAKAYVRKAQALFMLKDYNKCIDACNEASEVDRREPNTGKNLREIESQLSKCMSAMASQRQNETEEETMA 535
Cdd:COG0457 133 YERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLA 212

                       250       260       270
                ....*....|....*....|....*....|.
gi 19075623 536 RIQKDPEVLGILQDPAMQAILGQARENPAAL 566
Cdd:COG0457 213 ILTLAALAELLLLALALLLALRLAALALYQY 243
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 1-96 1.24e-14

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 75.59  E-value: 1.24e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623    1 MAEELKAKGNAAFSKKDYKTAIDYFTQAIGLDERNHILYSNRSACYASEKDYADALKDATKCTELKPDWAKGWSRKGAAL 80
Cdd:PLN03088   1 MAKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTAC 80

                         90
                 ....*....|....*.
gi 19075623   81 HGLGDLDAARSAYEEG 96
Cdd:PLN03088  81 MKLEEYQTAKAALEKG 96
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
354-514 1.36e-14

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 73.41  E-value: 1.36e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623 354 DLVKAIDYYQRSLTEHRTPDILSRLKDAEKSKELQDREAYIDPDKAEESRVKGNELFKSGDFANAIKEYTEMTKRAPSDP 433
Cdd:COG4785  28 ALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLA 107

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623 434 RGFGNRAAAYLKVMAPAECIRDCNKAIELDPNFAKAYVRKAQALFMLKDYNKCIDACNEASEVDRREPNTGKNLREIESQ 513
Cdd:COG4785 108 EAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERK 187


                .
gi 19075623 514 L 514
Cdd:COG4785 188 L 188
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
2-110 2.00e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 73.12  E-value: 2.00e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623   2 AEELKAKGNAAFSKKDYKTAIDYFTQAIGLDERNHILYSNRSACYASEKDYADALKDATKCTELKPDWAKGWSRKGAALH 81
Cdd:COG0457   8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQ 87

                        90       100
                ....*....|....*....|....*....
gi 19075623  82 GLGDLDAARSAYEEGLKHDANNAQLLNGL 110
Cdd:COG0457  88 ALGRYEEALEDYDKALELDPDDAEALYNL 116
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 268-497 5.01e-14

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 72.45  E-value: 5.01e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623 268 EKQIGNENYKKrnfpvAIEQYKKAWDTY-KDITYLNNLAAAYFEADQLDDCIKTCEDAIEQGRELradfkliAKALGRLG 346
Cdd:COG2956  16 LNYLLNGQPDK-----AIDLLEEALELDpETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDR-------AEALLELA 83

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623 347 TTYQKRGDLVKAIDYYQRSLTEHRTP--------DILSRLKDAEKSKELQDREAYIDPDKAEESRVKGNELFKSGDFANA 418
Cdd:COG2956  84 QDYLKAGLLDRAEELLEKLLELDPDDaealrllaEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEA 163

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 19075623 419 IKEYTEMTKRAPSDPRGFGNRAAAYLKVMAPAECIRDCNKAIELDPNFAKAYVRKAQALFMLKDYNKCIDACNEASEVD 497
Cdd:COG2956 164 IEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELD 242
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 2-110 1.47e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 73.49  E-value: 1.47e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623   2 AEELKAKGNAAFSKKDYKTAIDYFTQAIGLDERNHILYSNRSACYASEKDYADALKDATKCTELKPDWAKGWSRKGAALH 81
Cdd:COG3914  78 AALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALR 157

                        90       100
                ....*....|....*....|....*....
gi 19075623  82 GLGDLDAARSAYEEGLKHDANNAQLLNGL 110
Cdd:COG3914 158 RLGRLEEAIAALRRALELDPDNAEALNNL 186
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
2-117 2.78e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 70.04  E-value: 2.78e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623   2 AEELKAKGNAAFSKKDYKTAIDYFTQAIGLDERNHILYSNRSACYASEKDYADALKDATKCTELKPDWAKGWSRKGAALH 81
Cdd:COG0457  42 AEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALL 121

                        90       100       110
                ....*....|....*....|....*....|....*.
gi 19075623  82 GLGDLDAARSAYEEGLKHDANNAQLLNGLKSVEAAQ 117
Cdd:COG0457 122 ELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 260-591 6.74e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 71.56  E-value: 6.74e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623 260 ALKKKADQEKQIGNENYKKRNFPVAIEQYKKAWDTYKDITYLNNLAAAYFEADQLDdciktcEDAIEQGRELRADFKLIA 339
Cdd:COG3914   5 ALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALL------ALAAGEAAAAAAALLLLA 78

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623 340 KALGRLGTTYQKRGDLVKAIDYYQRSLTehrtpdilsrlkdaekskelqdreayIDPDKAEESRVKGNELFKSGDFANAI 419
Cdd:COG3914  79 ALLELAALLLQALGRYEEALALYRRALA--------------------------LNPDNAEALFNLGNLLLALGRLEEAL 132

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623 420 KEYTEMTKRAPSDPRGFGNRAAAYLKVMAPAECIRDCNKAIELDPNFAKAYVRKAQALFMLKDYNKCIDACNEASEVDrr 499
Cdd:COG3914 133 AALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELD-- 210

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623 500 ePntgkNLREIESQLSKCMSAMASQRQNETEEETMARIQKDPEVLGILQ-------DPAMQAILGQARenpAALMEHMKN 572
Cdd:COG3914 211 -P----DNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSPFAllylpddDPAELLALARAW---AQLVAAAAA 282

                       330
                ....*....|....*....
gi 19075623 573 PTVKSKIEKLIASGVIRLG 591
Cdd:COG3914 283 PELPPPPNPRDPDRKLRIG 301
STI1 pfam17830
STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 ...
 531-584 7.71e-13

STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 protein.


Pssm-ID: 436075  Cd Length: 55  Bit Score: 63.35  E-value: 7.71e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 19075623   531 EETMARIQKDPEVLGILQDPAMQAILGQARENPAALMEHMKNPTVKSKIEKLIA 584
Cdd:pfam17830   2 PELLAKLAANPETRALLSDPEFVAKLQQIQKNPSSLQQYMQDPRVMTKLGVLMG 55
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 399-535 1.18e-12

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 69.43  E-value: 1.18e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623  399 AEESRVKGNELFKSGDFANAIKEYTEMTKRAPSDPRGFGNRAAAYLKVMAPAECIRDCNKAIELDPNFAKAYVRKAQALF 478
Cdd:PLN03088   2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM 81

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 19075623  479 MLKDYNKCIDACNEASEVDRREPNTGKNLREIESQLS--------KCMSAMASQRQNETEEETMA 535
Cdd:PLN03088  82 KLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAeeekdlvqPVPSDLPSSVTAPPVEEADA 146
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 2-84 4.25e-12

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 68.86  E-value: 4.25e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623     2 AEELKAKGNAAFSKKDYKTAIDYFTQAIGLDErNHILYSNRSACYASEKDYADALKDATKCTELKPDWAKGWSRKGAALH 81
Cdd:TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205


                  ...
gi 19075623    82 GLG 84
Cdd:TIGR00990 206 GLG 208
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 9-110 6.16e-12

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 68.48  E-value: 6.16e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623   9 GNAAFSKKDYKTAIDYFTQAIGLDERNHILYSNRSACYASEKDYADALKDATKCTELKPDWAKGWSRKGAALHGLGDLDA 88
Cdd:COG3914 119 GNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEE 198

                        90       100
                ....*....|....*....|..
gi 19075623  89 ARSAYEEGLKHDANNAQLLNGL 110
Cdd:COG3914 199 AIAAYRRALELDPDNADAHSNL 220
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 249-493 2.64e-11

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 64.37  E-value: 2.64e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623 249 AEELEEAAT--KEALKKKADQEK---QIGNENYKKRNFPVAIEQYKKAWDTYKD-ITYLNNLAAAYFEADQLDDCIKTCE 322
Cdd:COG2956  21 NGQPDKAIDllEEALELDPETVEahlALGNLYRRRGEYDRAIRIHQKLLERDPDrAEALLELAQDYLKAGLLDRAEELLE 100

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623 323 DAIEQGRELradfkliAKALGRLGTTYQKRGDLVKAIDYYQRSLTEHRTP--------DILSRLKDAEKSKELQDREAYI 394
Cdd:COG2956 101 KLLELDPDD-------AEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENahaycelaELYLEQGDYDEAIEALEKALKL 173

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623 395 DPDKAEESRVKGNELFKSGDFANAIKEYTEMTKRAPSDPRGFGNRAAAYLKVMAPAECIRDCNKAIELDPNFAkAYVRKA 474
Cdd:COG2956 174 DPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDD-LLLALA 252

                       250
                ....*....|....*....
gi 19075623 475 QALFMLKDYNKCIDACNEA 493
Cdd:COG2956 253 DLLERKEGLEAALALLERQ 271
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
1-104 8.98e-11

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 61.85  E-value: 8.98e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623   1 MAEELKAKGNAAFSKKDYKTAIDYFTQAIGLDERNHILYSNRSACYASEKDYADALKDATKCTELKPDWAKGWSRKGAAL 80
Cdd:COG4785  72 LAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIAL 151

                        90       100
                ....*....|....*....|....
gi 19075623  81 HGLGDLDAARSAYEEGLKHDANNA 104
Cdd:COG4785 152 YYLGRYELAIADLEKALELDPNDP 175
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
394-514 9.96e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 62.33  E-value: 9.96e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623 394 IDPDKAEESRVKGNELFKSGDFANAIKEYTEMTKRAPSDPRGFGNRAAAYLKVMAPAECIRDCNKAIELDPNFAKAYVRK 473
Cdd:COG0457   3 LDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNL 82

                        90       100       110       120
                ....*....|....*....|....*....|....*....|.
gi 19075623 474 AQALFMLKDYNKCIDACNEASEVDRREPNTGKNLREIESQL 514
Cdd:COG0457  83 GLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLEL 123
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
2-121 1.17e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 61.95  E-value: 1.17e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623   2 AEELKAKGNAAFSKKDYKTAIDYFTQAIGLDERNHILYSNRSACYASEKDYADALKDATKCTELKPDWAKGWSRKGAALH 81
Cdd:COG0457  76 AEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALE 155

                        90       100       110       120
                ....*....|....*....|....*....|....*....|
gi 19075623  82 GLGDLDAARSAYEEGLKHDANNAQLLNGLKSVEAAQTQAA 121
Cdd:COG0457 156 KLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEV 195
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 304-571 3.42e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 61.28  E-value: 3.42e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623 304 LAAAYFEADQLDDCIKTCEDAIEQGRELradfkliAKALGRLGTTYQKRGDLVKAIDYYQRsltehrtpdILSRlkdaek 383
Cdd:COG2956  14 KGLNYLLNGQPDKAIDLLEEALELDPET-------VEAHLALGNLYRRRGEYDRAIRIHQK---------LLER------ 71

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623 384 skelqdreayiDPDKAEESRVKGNELFKSGDFANAIKEYTEMTKRAPSDPRGFGNRAAAYLKVMAPAECIRDCNKAIELD 463
Cdd:COG2956  72 -----------DPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLG 140

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623 464 PNFAKAYVRKAQALFMLKDYNKCIDACNEASEVDRrepntgknlREIESQLSKCMSAMASQRQNETEEETMARIQKDPEV 543
Cdd:COG2956 141 PENAHAYCELAELYLEQGDYDEAIEALEKALKLDP---------DCARALLLLAELYLEQGDYEEAIAALERALEQDPDY 211

                       250       260
                ....*....|....*....|....*...
gi 19075623 544 LGILqdpAMQAILGQARENPAALMEHMK 571
Cdd:COG2956 212 LPAL---PRLAELYEKLGDPEEALELLR 236
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 9-170 1.20e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 59.36  E-value: 1.20e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623   9 GNAAFSKKDYKTAIDYFTQAIGLDERNHILYSNRSACYASEKDYADALKDATKCTELKPDWAKGWSRKGAALHGLGDLDA 88
Cdd:COG2956  83 AQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDE 162

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623  89 ARSAYEEGLKHDANNAQLLNGLKSVEAAQ--------------TQAASGAGGFNPFAKLGSQLSDPK-----FMEKLASN 149
Cdd:COG2956 163 AIEALEKALKLDPDCARALLLLAELYLEQgdyeeaiaaleralEQDPDYLPALPRLAELYEKLGDPEealelLRKALELD 242

                       170       180
                ....*....|....*....|.
gi 19075623 150 PETASLLADSAFMAKLQKIQQ 170
Cdd:COG2956 243 PSDDLLLALADLLERKEGLEA 263
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
29-110 2.72e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 58.09  E-value: 2.72e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623  29 IGLDERNHILYSNRSACYASEKDYADALKDATKCTELKPDWAKGWSRKGAALHGLGDLDAARSAYEEGLKHDANNAQLLN 108
Cdd:COG0457   1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80


                ..
gi 19075623 109 GL 110
Cdd:COG0457  81 NL 82
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 2-100 3.30e-09

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 56.12  E-value: 3.30e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623   2 AEELKAKGNAAFSKKDYKTAIDYFTQAIGLDERNHILYSNRSACYASEKDYADALKDATKCTELKPDWAKGWSRKGAALH 81
Cdd:COG5010  54 FAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLL 133

                        90
                ....*....|....*....
gi 19075623  82 GLGDLDAARSAYEEGLKHD 100
Cdd:COG5010 134 SLGQDDEAKAALQRALGTS 152
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 2-121 4.09e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 55.20  E-value: 4.09e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623   2 AEELKAKGNAAFSKKDYKTAIDYFTQAIGLDERNHILYSNRSACYASEKDYADALKDATKCTELKPDWAKGWSRKGAALH 81
Cdd:COG4783   4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                        90       100       110       120
                ....*....|....*....|....*....|....*....|
gi 19075623  82 GLGDLDAARSAYEEGLKHDANNAQLLNGLKSVEAAQTQAA 121
Cdd:COG4783  84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPD 123
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 7-103 7.50e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 54.43  E-value: 7.50e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623   7 AKGNAAFSKKDYKTAIDYFTQAIGLDERNHILYSNRSACYASEKDYADALKDATKCTELKPDWAKGWSRKGAALHGLGDL 86
Cdd:COG4783  43 LLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRP 122

                        90
                ....*....|....*..
gi 19075623  87 DAARSAYEEGLKHDANN 103
Cdd:COG4783 123 DEAIAALEKALELDPDD 139
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 395-489 1.55e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 53.47  E-value: 1.55e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623 395 DPDKAEESRVKGNELFKSGDFANAIKEYTEMTKRAPSDPRGFGNRAAAYLKVMAPAECIRDCNKAIELDPNFAKAYVRKA 474
Cdd:COG4235  13 NPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLG 92

                        90
                ....*....|....*
gi 19075623 475 QALFMLKDYNKCIDA 489
Cdd:COG4235  93 LAAFQQGDYAEAIAA 107
TPR_12 pfam13424
Tetratricopeptide repeat;
301-366 4.52e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 50.46  E-value: 4.52e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 19075623   301 LNNLAAAYFEADQLDDCIKTCEDAIEQGRELR-ADFKLIAKALGRLGTTYQKRGDLVKAIDYYQRSL 366
Cdd:pfam13424   6 LNNLAAVLRRLGRYDEALELLEKALEIARRLLgPDHPLTATTLLNLGRLYLELGRYEEALELLERAL 72
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
11-105 5.39e-08

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 50.94  E-value: 5.39e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623  11 AAFSKKDYKTAIDYFTQAIGLDERNHILYSNRSACYASEKDYADALKdATKCTELKPDWAKGWSRKGAALHGLGDLDAAR 90
Cdd:COG3063   1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                        90
                ....*....|....*
gi 19075623  91 SAYEEGLKHDANNAQ 105
Cdd:COG3063  80 AYLERALELDPSALR 94
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 374-497 1.84e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 50.58  E-value: 1.84e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623 374 ILSRLKDAEKSKELQDREAYIDPDKAEESRVKGNELFKSGDFANAIKEYTEMTKRAPSDPRGFGNRAAAYLKVMAPAECI 453
Cdd:COG4783  13 ALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEAL 92

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....
gi 19075623 454 RDCNKAIELDPNFAKAYVRKAQALFMLKDYNKCIDACNEASEVD 497
Cdd:COG4783  93 ALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 300-466 2.27e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 50.19  E-value: 2.27e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623 300 YLNNLAAAYFEADQLDDCIKTCEDAIEQGRELradfkliAKALGRLGTTYQKRGDLVKAIDYYQRSLTehrtpdilsrlk 379
Cdd:COG4783   6 ALYALAQALLLAGDYDEAEALLEKALELDPDN-------PEAFALLGEILLQLGDLDEAIVLLHEALE------------ 66

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623 380 daekskelqdreayIDPDKAEESRVKGNELFKSGDFANAIKEYTEMTKRAPSDPRGFGNRAAAYLKVMAPAECIRDCNKA 459
Cdd:COG4783  67 --------------LDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKA 132


                ....*..
gi 19075623 460 IELDPNF 466
Cdd:COG4783 133 LELDPDD 139
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 278-496 3.15e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 53.55  E-value: 3.15e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623   278 KRNFPVAIEQYKKAWDTYKDITYLN-NLAAAYFEADQLDDCIKTCEDAIEQGRELRADFKLiakalgrLGTTYQKRGDLV 356
Cdd:TIGR02917 648 MKNYAKAITSLKRALELKPDNTEAQiGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFEL-------EGDLYLRQKDYP 720

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623   357 KAIDYYQRSLTEHRTPDILSRLKDA-----EKSKELQDREAY--IDPDKAEESRVKGNELFKSGDFANAIKEYTEMTKRA 429
Cdd:TIGR02917 721 AAIQAYRKALKRAPSSQNAIKLHRAllasgNTAEAVKTLEAWlkTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKA 800

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 19075623   430 PSDPRGFGNRAAAYLKvMAPAECIRDCNKAIELDPN-------FAKAYVRKAQALFMLKDYNKCIDACNEASEV 496
Cdd:TIGR02917 801 PDNAVVLNNLAWLYLE-LKDPRALEYAERALKLAPNipaildtLGWLLVEKGEADRALPLLRKAVNIAPEAAAI 873
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 398-514 5.19e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 49.03  E-value: 5.19e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623 398 KAEESRVKGNELFKSGDFANAIKEYTEMTKRAPSDPRGFGNRAAAYLKVMAPAECIRDCNKAIELDPNFAKAYVRKAQAL 477
Cdd:COG4783   3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82

                        90       100       110
                ....*....|....*....|....*....|....*..
gi 19075623 478 FMLKDYNKCIDACNEASEVDRREPNTGKNLREIESQL 514
Cdd:COG4783  83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRAL 119
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 215-502 6.08e-07

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 52.29  E-value: 6.08e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623   215 APSSSTPSADSAKPETTNPPPQPQASEPMEEDktaEELEEAATKEALKKKADQEKQIGNENYKKRNFPVAIEQYKKAWDT 294
Cdd:TIGR00990  80 AEKETEGKTEEKKSTAPKNAPVEPADELPEID---ESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIEC 156

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623   295 YKDITYLNNLAAAYFEADQLDDCIKTCEDAIeqgrELRADFkliAKALGRLGTTYQKRGDLVKA---------IDYYQRS 365
Cdd:TIGR00990 157 KPDPVYYSNRAACHNALGDWEKVVEDTTAAL----ELDPDY---SKALNRRANAYDGLGKYADAlldltasciIDGFRNE 229

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623   366 LTEHRTPDILSRLKDAEKSKELQDREAYIDP---------------------DKAEESRVKGNELFKSG----------- 413
Cdd:TIGR00990 230 QSAQAVERLLKKFAESKAKEILETKPENLPSvtfvgnylqsfrpkprpagleDSNELDEETGNGQLQLGlkspeskades 309

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623   414 --DFANAIKEYTEMTKRAPSDPRGFGNRAAAYLKVMAPAECIRDCNKAIELDPNFAKAYVRKAQALFMLKDYNKCIDACN 491
Cdd:TIGR00990 310 yeEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFD 389

                         330
                  ....*....|.
gi 19075623   492 EASEVDRREPN 502
Cdd:TIGR00990 390 KALKLNSEDPD 400
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 418-502 7.52e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 48.46  E-value: 7.52e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623 418 AIKEYTEMTKRAPSDPRGFGNRAAAYLKVMAPAECIRDCNKAIELDPNFAKAYVRKAQALFMLKDYNKCIDACNEASEVD 497
Cdd:COG4235   2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81


                ....*
gi 19075623 498 RREPN 502
Cdd:COG4235  82 PDNPE 86
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
409-499 2.77e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 45.93  E-value: 2.77e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623 409 LFKSGDFANAIKEYTEMTKRAPSDPRGFGNRAAAYLKVMAPAECIRdCNKAIELDPNFAKAYVRKAQALFMLKDYNKCID 488
Cdd:COG3063   2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80

                        90
                ....*....|.
gi 19075623 489 ACNEASEVDRR 499
Cdd:COG3063  81 YLERALELDPS 91
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
7-105 4.12e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 47.99  E-value: 4.12e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623   7 AKGNAAFSKKDYKTAIDYFTQAIGLDErNHILYSNRSACYASEKDYADALKDATKCTELKPDWAKGWSRKGAALHGLGDL 86
Cdd:COG4785  45 ALALAAAALAAAALAAERIDRALALPD-LAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDY 123

                        90
                ....*....|....*....
gi 19075623  87 DAARSAYEEGLKHDANNAQ 105
Cdd:COG4785 124 DAALEDFDRALELDPDYAY 142
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1-107 8.76e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 48.84  E-value: 8.76e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623   1 MAEELKAKGNAAFSKKDYKTAIDYFTQAIGLDERNHILYSNRSACYASEKDYADALKDATKCTELKPDWAKGWSRKGAAL 80
Cdd:COG3914 145 FAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFAL 224

                        90       100
                ....*....|....*....|....*..
gi 19075623  81 HGLGDLDAArSAYEEGLKHDANNAQLL 107
Cdd:COG3914 225 RQACDWEVY-DRFEELLAALARGPSEL 250
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 9-105 1.08e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 45.38  E-value: 1.08e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623   9 GNAAFSKKDYKTAIDYFTQAIGLDERNHILYSNRSACYASEKDYADALKDATKCTELKPDWAKGWSRKGAALHGLGDLDA 88
Cdd:COG4235  24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAE 103

                        90
                ....*....|....*..
gi 19075623  89 ARSAYEEGLKHDANNAQ 105
Cdd:COG4235 104 AIAAWQKLLALLPADAP 120
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 280-531 1.09e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 48.54  E-value: 1.09e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623   280 NFPVAIEQYKKAWD-TYKDITYLNNLAAAYFEADQLDDCIKTCEDAIEQGR-ELRADFkliAKALGRLgttyqKRGDLVK 357
Cdd:TIGR02917 208 NIELALAAYRKAIAlRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPnSPLAHY---LKALVDF-----QKKNYED 279

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623   358 AIDYYQRSL---TEHRTPDILS-----RLKDAEKSKELQDREAYIDPDKAEESRVKGNELFKSGDFANAIKEYTEMTKRA 429
Cdd:TIGR02917 280 ARETLQDALksaPEYLPALLLAgaseyQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD 359

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623   430 PSDPRGFGNRAAAYLKVMAPAECIRDCNKAIELDPNFAKAYVRKAQALFMLKDYNKCIDACNEASEVDRREPNTGKNLRE 509
Cdd:TIGR02917 360 PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLIL 439

                         250       260
                  ....*....|....*....|..
gi 19075623   510 IESQLSKCMSAMASQRQNETEE 531
Cdd:TIGR02917 440 SYLRSGQFDKALAAAKKLEKKQ 461
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 1-469 1.92e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 47.77  E-value: 1.92e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623     1 MAEELKAKGNAAFSKKDYKTAidyftQAIGLDERNHILYSNRSacYASEKDYADALKDATKCTEL-KPDWAKGWSRKGAA 79
Cdd:TIGR02917  62 LGKIYLALGDYAAAEKELRKA-----LSLGYPKNQVLPLLARA--YLLQGKFQQVLDELPGKTLLdDEGAAELLALRGLA 134

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623    80 LHGLGDLDAARSAYEEGLKHDANNAQLLNGLKSVEAAQTQAASGaggfnpfaklgSQLSDpkfmEKLASNPETA---SLL 156
Cdd:TIGR02917 135 YLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEA-----------RALID----EVLTADPGNVdalLLK 199

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623   157 ADSAFM---------AKLQKIQQNPGSIMAELNdprmmkvigmLMGIDINMNAGEGAAEEQEKKEEFAPSSstpsadsak 227
Cdd:TIGR02917 200 GDLLLSlgnielalaAYRKAIALRPNNIAVLLA----------LATILIEAGEFEEAEKHADALLKKAPNS--------- 260

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623   228 PETTnpppQPQASEPMEEDKTAEELEEAATkeALKKKADQ--EKQI-GNENYKKRNFPVAIEQYKKAWD-TYKDITYLNN 303
Cdd:TIGR02917 261 PLAH----YLKALVDFQKKNYEDARETLQD--ALKSAPEYlpALLLaGASEYQLGNLEQAYQYLNQILKyAPNSHQARRL 334

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623   304 LAAAYFEADQLDDCIKTCEDAIEQGRElradfklIAKALGRLGTTYQKRGDLVKAIDYYQRS------LTEHRTPDILSR 377
Cdd:TIGR02917 335 LASIQLRLGRVDEAIATLSPALGLDPD-------DPAALSLLGEAYLALGDFEKAAEYLAKAteldpeNAAARTQLGISK 407

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623   378 LKDAEKSKELQDRE--AYIDPDKAEESRVKGNELFKSGDFANAIKEYTEMTKRAPSDPRGFGNRAAAYLKVMAPAECIRD 455
Cdd:TIGR02917 408 LSQGDPSEAIADLEtaAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREA 487

                         490
                  ....*....|....
gi 19075623   456 CNKAIELDPNFAKA 469
Cdd:TIGR02917 488 FEKALSIEPDFFPA 501
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 375-485 2.00e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 44.95  E-value: 2.00e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623 375 LSRLKDAEKSKELQDREAYIDPDKAEESRVKGNELFKSGDFANAIKEYTEMTKRAPSDPRGFGNRAAAYLKVMAPAECIR 454
Cdd:COG5010  30 ALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKE 109

                        90       100       110
                ....*....|....*....|....*....|.
gi 19075623 455 DCNKAIELDPNFAKAYVRKAQALFMLKDYNK 485
Cdd:COG5010 110 YYEKALALSPDNPNAYSNLAALLLSLGQDDE 140
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 5-110 2.30e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 46.26  E-value: 2.30e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623   5 LKAKGNAAFSKKDYKTAIDYFTQAIGLDERNHILYSNRSACYASEKDYADALKDATKCTELKPDWAKGWSRKGAALHGLG 84
Cdd:COG2956  45 HLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEG 124

                        90       100
                ....*....|....*....|....*.
gi 19075623  85 DLDAARSAYEEGLKHDANNAQLLNGL 110
Cdd:COG2956 125 DWEKAIEVLERLLKLGPENAHAYCEL 150
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 276-369 5.56e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 42.67  E-value: 5.56e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623 276 YKKRNFPVAIEQYKKAWDTYKDITY----LNNLAAAYFEADQLDDCIKTCEDAIEQgrelRADFKLIAKALGRLGTTYQK 351
Cdd:COG1729   4 LKAGDYDEAIAAFKAFLKRYPNSPLapdaLYWLGEAYYALGDYDEAAEAFEKLLKR----YPDSPKAPDALLKLGLSYLE 79

                        90
                ....*....|....*...
gi 19075623 352 RGDLVKAIDYYQRSLTEH 369
Cdd:COG1729  80 LGDYDKARATLEELIKKY 97
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 2-117 7.15e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 43.41  E-value: 7.15e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623   2 AEELKAKGNAAFSKKDYKTAIDYFTQAIGLDERNHILYSNRSACYASEKDYADALKDATKCTELKPDWAKGWSRKGAALH 81
Cdd:COG5010  20 LRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYS 99

                        90       100       110
                ....*....|....*....|....*....|....*.
gi 19075623  82 GLGDLDAARSAYEEGLKHDANNAQLLNGLKSVEAAQ 117
Cdd:COG5010 100 RSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSL 135
STI1 smart00727
Heat shock chaperonin-binding motif;
540-579 1.20e-04

Heat shock chaperonin-binding motif;


Pssm-ID: 128966  Cd Length: 41  Bit Score: 39.56  E-value: 1.20e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 19075623    540 DPEVLGILQDPAMQAILGQARENPAALMEHMK-NPTVKSKI 579
Cdd:smart00727   1 DPEMALRLQNPQVQSLLQDMQQNPDMLAQMLQeNPQLLQLI 41
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 21-110 2.21e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 41.53  E-value: 2.21e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623  21 AIDYFTQAIGLDERNHILYSNRSACYASEKDYADALKDATKCTELKPDWAKGWSRKGAALHGLGDLDAARSAYEEGLKHD 100
Cdd:COG4235   2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                        90
                ....*....|
gi 19075623 101 ANNAQLLNGL 110
Cdd:COG4235  82 PDNPEALYLL 91
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 404-510 3.04e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 42.79  E-value: 3.04e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623 404 VKGNELFKSGDFANAIKEYTEMTKRAPSDPRGFGNRAAAYLKVMAPAECIRDCNKAIELDPNFAKAYVRKAQALFMLKDY 483
Cdd:COG2956  13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLL 92

                        90       100
                ....*....|....*....|....*..
gi 19075623 484 NKCIDACNEASEVDRREPNTGKNLREI 510
Cdd:COG2956  93 DRAEELLEKLLELDPDDAEALRLLAEI 119
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
329-431 3.53e-04

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 42.56  E-value: 3.53e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623 329 RELRADFKLIAKALGR--LGTTYQKRGDLVKAIDYYQRSLT-EHRT-PDILSRL-------KDAEKSKELQDREAYIDPD 397
Cdd:COG4700  77 RELEKALEFADTVQNRvrLADALLELGRYDEAIELYEEALTgIFADdPHILLGLaqalfelGRYAEALETLEKLIAKNPD 156

                        90       100       110
                ....*....|....*....|....*....|....*.
gi 19075623 398 --KAEESRVKGNELFKSGDFANAIKEYTEMTKRAPS 431
Cdd:COG4700 157 fkSSDAHLLYARALEALGDLEAAEAELEALARRYSG 192
TPR_7 pfam13176
Tetratricopeptide repeat;
341-373 5.50e-04

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 37.52  E-value: 5.50e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 19075623   341 ALGRLGTTYQKRGDLVKAIDYYQRSLTEHRTPD 373
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPY 33
YfgM COG2976
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ...
 10-111 5.74e-04

Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];


Pssm-ID: 442215 [Multi-domain]  Cd Length: 207  Bit Score: 41.38  E-value: 5.74e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623  10 NAAFSKKDYKTAIDYFTQAI---GLDERNHILYSNRSACYASEKDYADALKdatkctELKPDWAKGWS-----RKGAALH 81
Cdd:COG2976  98 KAAVDAGDLDKAAAQLQWVLdnaKDPALKALARLRLARVLLAQKKYDEALA------TLDAVKPEAFAalyaeLRGDILL 171

                        90       100       110
                ....*....|....*....|....*....|
gi 19075623  82 GLGDLDAARSAYEEGLKHDANNAQLLNGLK 111
Cdd:COG2976 172 AQGDKAEARAAYQKALAALPEDAPLRQLLQ 201
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 339-433 8.97e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 39.60  E-value: 8.97e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623 339 AKALGRLGTTYQKRGDLVKAIDYYQRSLT-EHRTPDILSRL-------KDAEKSKELQDREAYIDPDKAEESRVKGNELF 410
Cdd:COG4235  17 AEGWLLLGRAYLRLGRYDEALAAYEKALRlDPDNADALLDLaeallaaGDTEEAEELLERALALDPDNPEALYLLGLAAF 96

                        90       100
                ....*....|....*....|...
gi 19075623 411 KSGDFANAIKEYTEMTKRAPSDP 433
Cdd:COG4235  97 QQGDYAEAIAAWQKLLALLPADA 119
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
2-121 9.44e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 41.15  E-value: 9.44e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623   2 AEELKAKGNAAFSKKDYKTAIDYFTQAIGLDERNHILYSNRSACYASEKDYADALKDATKCTELKPDWAKGWSRKGAALH 81
Cdd:COG0457 110 AEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALA 189

                        90       100       110       120
                ....*....|....*....|....*....|....*....|
gi 19075623  82 GLGDLDAARSAYEEGLKHDANNAQLLNGLKSVEAAQTQAA 121
Cdd:COG0457 190 LAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALAL 229
TPR_1 pfam00515
Tetratricopeptide repeat;
339-366 9.95e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.02  E-value: 9.95e-04
                          10        20
                  ....*....|....*....|....*...
gi 19075623   339 AKALGRLGTTYQKRGDLVKAIDYYQRSL 366
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKAL 28
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
284-401 1.16e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 41.15  E-value: 1.16e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623 284 AIEQYKKAWDT-YKDITYLNNLAAAYFEADQLDDCIKTCEDAIEQGRELradfkliAKALGRLGTTYQKRGDLVKAIDYY 362
Cdd:COG0457  95 ALEDYDKALELdPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDD-------ADALYNLGIALEKLGRYEEALELL 167

                        90       100       110
                ....*....|....*....|....*....|....*....
gi 19075623 363 QRSLTEHRTPDILSRLKDAEKSKELQDREAYIDPDKAEE 401
Cdd:COG0457 168 EKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQA 206
TPR_1 pfam00515
Tetratricopeptide repeat;
433-466 1.61e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 36.24  E-value: 1.61e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 19075623   433 PRGFGNRAAAYLKVMAPAECIRDCNKAIELDPNF 466
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 303-445 1.72e-03

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 40.40  E-value: 1.72e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623   303 NLAAAYFEADQLDDCIKTCEDAIEQGRELradfkliAKALGRLGTTYQKRGDLVKAIDYYQRSLT-EHRTPDI------- 374
Cdd:TIGR02521  36 QLALGYLEQGDLEVAKENLDKALEHDPDD-------YLAYLALALYYQQLGELEKAEDSFRRALTlNPNNGDVlnnygtf 108

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 19075623   375 LSRLKDAEKSKElQDREAYIDPDKAEESRV---KGNELFKSGDFANAIKEYTEMTKRAPSDPRGFGNRAAAYLK 445
Cdd:TIGR02521 109 LCQQGKYEQAMQ-QFEQAIEDPLYPQPARSlenAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYL 181
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 327-464 2.23e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 39.17  E-value: 2.23e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623 327 QGRELRADFKLIAKALGRLGTTYQKRGDLVKAIDYYQRSLTEHRTPDILSRLKDAEKSKELQDREAYIDPDKAEESRVKG 406
Cdd:COG5010  16 LLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLA 95

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 19075623 407 NELFKSGDFANAIKEYTEMTKRAPSDPRGFGNRAAAYLKVMAPAECIRDCNKAIELDP 464
Cdd:COG5010  96 LLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 270-366 2.34e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 38.45  E-value: 2.34e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623 270 QIGNENYKKRNFPVAIEQYKKAWDTY-KDITYLNNLAAAYFEADQLDDCIKTCEDAIEqgreLRADFkliAKALGRLGTT 348
Cdd:COG4235  22 LLGRAYLRLGRYDEALAAYEKALRLDpDNADALLDLAEALLAAGDTEEAEELLERALA----LDPDN---PEALYLLGLA 94

                        90
                ....*....|....*...
gi 19075623 349 YQKRGDLVKAIDYYQRSL 366
Cdd:COG4235  95 AFQQGDYAEAIAAWQKLL 112
TPR_1 pfam00515
Tetratricopeptide repeat;
2-35 2.51e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.86  E-value: 2.51e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 19075623     2 AEELKAKGNAAFSKKDYKTAIDYFTQAIGLDERN 35
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 339-367 3.48e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.11  E-value: 3.48e-03
                           10        20
                   ....*....|....*....|....*....
gi 19075623    339 AKALGRLGTTYQKRGDLVKAIDYYQRSLT 367
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALE 29
TPR_17 pfam13431
Tetratricopeptide repeat;
456-487 4.04e-03

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 35.21  E-value: 4.04e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 19075623   456 CNKAIELDPNFAKAYVRKAQALFMLKDYNKCI 487
Cdd:pfam13431   2 YLKALELDPNNADAYYNLAVLLLELGQSETAL 33
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 307-445 4.34e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 37.28  E-value: 4.34e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623 307 AYFEADQLDDCIKTCEDAIEQGrelrADFKLIAKALGRLGTTYQKRGDLVKAIDYYQRSLtehrtpdilsrlkdaekske 386
Cdd:COG1729   2 ALLKAGDYDEAIAAFKAFLKRY----PNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLL-------------------- 57

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623 387 lqdrEAYIDPDKAEESRVK-GNELFKSGDFANAIKEYTEMTKRAPSDPrgFGNRAAAYLK 445
Cdd:COG1729  58 ----KRYPDSPKAPDALLKlGLSYLELGDYDKARATLEELIKKYPDSE--AAKEARARLA 111
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
9-94 5.43e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 38.71  E-value: 5.43e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623   9 GNAAFSKKDYKTAIDYFTQAIGLDERN--HILYSNRSACYASeKDYADALKDATKCTELKPDWAKGWSR--KGAALHGLG 84
Cdd:COG4700  96 ADALLELGRYDEAIELYEEALTGIFADdpHILLGLAQALFEL-GRYAEALETLEKLIAKNPDFKSSDAHllYARALEALG 174

                        90
                ....*....|
gi 19075623  85 DLDAARSAYE 94
Cdd:COG4700 175 DLEAAEAELE 184
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 54-110 5.49e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 37.29  E-value: 5.49e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 19075623  54 DALKDATKCTELKPDWAKGWSRKGAALHGLGDLDAARSAYEEGLKHDANNAQLLNGL 110
Cdd:COG4235   1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDL 57
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
276-366 5.67e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 36.30  E-value: 5.67e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623 276 YKKRNFPVAIEQYKKAWDTY-KDITYLNNLAAAYFEADQLDDCIktcedAIEQGRELRADFkliAKALGRLGTTYQKRGD 354
Cdd:COG3063   3 LKLGDLEEAEEYYEKALELDpDNADALNNLGLLLLEQGRYDEAI-----ALEKALKLDPNN---AEALLNLAELLLELGD 74

                        90
                ....*....|..
gi 19075623 355 LVKAIDYYQRSL 366
Cdd:COG3063  75 YDEALAYLERAL 86
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 2-35 5.69e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 34.73  E-value: 5.69e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 19075623      2 AEELKAKGNAAFSKKDYKTAIDYFTQAIGLDERN 35
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 296-485 5.98e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 39.68  E-value: 5.98e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623   296 KDITYLNNLAAAYFEADQLDDciktcedAIEQGRELRADFKLIAKALGRLGTTYQKRGDLVKAIDYYQRSLTEH------ 369
Cdd:TIGR02917 565 QEIEPALALAQYYLGKGQLKK-------ALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQpdsala 637

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623   370 --RTPDILSRLKDAEKSKELQDREAYIDPDKAEESRVKGNELFKSGDFANAIKEYTEMTKRAPSDPRGFGNRAAAYLKVM 447
Cdd:TIGR02917 638 llLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQK 717

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 19075623   448 APAECIRDCNKAIELDPNfAKAYVRKAQALFMLKDYNK 485
Cdd:TIGR02917 718 DYPAAIQAYRKALKRAPS-SQNAIKLHRALLASGNTAE 754
TPR_21 pfam09976
Tetratricopeptide repeat-like domain; This family resembles a single unit of a TPR repeat.
 1-97 6.43e-03

Tetratricopeptide repeat-like domain; This family resembles a single unit of a TPR repeat.


Pssm-ID: 430959 [Multi-domain]  Cd Length: 194  Bit Score: 38.33  E-value: 6.43e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623     1 MAEELKAKgnAAFSKKDYKTAIDYFTQAIGL---DERNHILYSNRSACYASEKDYADALKdatkctELKPDWAKGWS--- 74
Cdd:pfam09976  77 LAALLLAK--AAVEAGDLAAAKAQLEWVADNakdEALKALARLRLARVLLAQGKYDEALK------TLDAVTPAAFAaly 148

                          90       100
                  ....*....|....*....|....*
gi 19075623    75 --RKGAALHGLGDLDAARSAYEEGL 97
Cdd:pfam09976 149 aeLRGDILVAQGKTDEARAAYQAAL 173
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
349-465 6.82e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 36.30  E-value: 6.82e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 19075623 349 YQKRGDLVKAIDYYQRSLTehrtpdilsrlkdaekskelqdreayIDPDKAEESRVKGNELFKSGDFANAIkEYTEMTKR 428
Cdd:COG3063   2 YLKLGDLEEAEEYYEKALE--------------------------LDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKL 54

                        90       100       110
                ....*....|....*....|....*....|....*..
gi 19075623 429 APSDPRGFGNRAAAYLKVMAPAECIRDCNKAIELDPN 465
Cdd:COG3063  55 DPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 467-498 7.57e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 34.34  E-value: 7.57e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 19075623    467 AKAYVRKAQALFMLKDYNKCIDACNEASEVDR 498
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDP 32
TPR_1 pfam00515
Tetratricopeptide repeat;
467-497 7.63e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 34.32  E-value: 7.63e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 19075623   467 AKAYVRKAQALFMLKDYNKCIDACNEASEVD 497
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELN 31
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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