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Conserved domains on  [gi|19075990|ref|NP_588490|]
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mitochondrial 54S ribosomal protein uL30m [Schizosaccharomyces pombe]

Protein Classification

uL30 family ribosomal protein( domain architecture ID 10086078)

uL30 family ribosomal protein such as eukaryotic mitochondrial 39S ribosomal protein L30 which is part of the mitochondrial large ribosomal subunit (39S), fungal mitochondrial 54S ribosomal protein L33 which is part of the mitochondrial large ribosomal subunit (54S), and prokaryotic 50S ribosomal protein L30 which is part of the large ribosomal subunit (50S)

Gene Ontology:  GO:0005762
PubMed:  24524803

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L30_like cd00355
Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one ...
 5-56 3.40e-13

Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea.


:

Pssm-ID: 100098 [Multi-domain]  Cd Length: 53  Bit Score: 58.19  E-value: 3.40e-13
                       10        20        30        40        50
               ....*....|....*....|....*....|....*....|....*....|..
gi 19075990  5 RVRLERSAIGLSSKVRSVLHSLRLTKRHSVVYCDVNPINAGRIFKVKELVSV 56
Cdd:cd00355  1 KVTRVRSLIGRPPKQRKTLKALGLRKINQTVFVKDTPSIRGMLRKVKHLVTV 52
 
Name Accession Description Interval E-value
Ribosomal_L30_like cd00355
Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one ...
 5-56 3.40e-13

Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea.


Pssm-ID: 100098 [Multi-domain]  Cd Length: 53  Bit Score: 58.19  E-value: 3.40e-13
                       10        20        30        40        50
               ....*....|....*....|....*....|....*....|....*....|..
gi 19075990  5 RVRLERSAIGLSSKVRSVLHSLRLTKRHSVVYCDVNPINAGRIFKVKELVSV 56
Cdd:cd00355  1 KVTRVRSLIGRPPKQRKTLKALGLRKINQTVFVKDTPSIRGMLRKVKHLVTV 52
Ribosomal_L30 pfam00327
Ribosomal protein L30p/L7e; This family includes prokaryotic L30 and eukaryotic L7.
 4-54 2.49e-12

Ribosomal protein L30p/L7e; This family includes prokaryotic L30 and eukaryotic L7.


Pssm-ID: 459762 [Multi-domain]  Cd Length: 51  Bit Score: 56.17  E-value: 2.49e-12
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 19075990    4 FRVRLERSAIGLSSKVRSVLHSLRLTKRHSVVYCDVNPINAGRIFKVKELV 54
Cdd:pfam00327  1 LKVTRIRSIIGRPPKQRKTLKALGLRKINGVVVKEDTPSIRGMLRKVKHLV 51
RpmD COG1841
Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 1-56 5.18e-08

Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L30/L7E is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 441446  Cd Length: 58  Bit Score: 45.42  E-value: 5.18e-08
                       10        20        30        40        50
               ....*....|....*....|....*....|....*....|....*....|....*.
gi 19075990  1 MSFFRVRLERSAIGLSSKVRSVLHSLRLTKRHSVVYCDVNPINAGRIFKVKELVSV 56
Cdd:COG1841  1 MKKLKVTLVRSTIGRPPDQRATLKALGLRKINHTVELPDTPAIRGMINKVKHLVTV 56
 
Name Accession Description Interval E-value
Ribosomal_L30_like cd00355
Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one ...
 5-56 3.40e-13

Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea.


Pssm-ID: 100098 [Multi-domain]  Cd Length: 53  Bit Score: 58.19  E-value: 3.40e-13
                       10        20        30        40        50
               ....*....|....*....|....*....|....*....|....*....|..
gi 19075990  5 RVRLERSAIGLSSKVRSVLHSLRLTKRHSVVYCDVNPINAGRIFKVKELVSV 56
Cdd:cd00355  1 KVTRVRSLIGRPPKQRKTLKALGLRKINQTVFVKDTPSIRGMLRKVKHLVTV 52
Ribosomal_L30 pfam00327
Ribosomal protein L30p/L7e; This family includes prokaryotic L30 and eukaryotic L7.
 4-54 2.49e-12

Ribosomal protein L30p/L7e; This family includes prokaryotic L30 and eukaryotic L7.


Pssm-ID: 459762 [Multi-domain]  Cd Length: 51  Bit Score: 56.17  E-value: 2.49e-12
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 19075990    4 FRVRLERSAIGLSSKVRSVLHSLRLTKRHSVVYCDVNPINAGRIFKVKELV 54
Cdd:pfam00327  1 LKVTRIRSIIGRPPKQRKTLKALGLRKINGVVVKEDTPSIRGMLRKVKHLV 51
RpmD COG1841
Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis]; Ribosomal protein ...
 1-56 5.18e-08

Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis]; Ribosomal protein L30/L7E is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 441446  Cd Length: 58  Bit Score: 45.42  E-value: 5.18e-08
                       10        20        30        40        50
               ....*....|....*....|....*....|....*....|....*....|....*.
gi 19075990  1 MSFFRVRLERSAIGLSSKVRSVLHSLRLTKRHSVVYCDVNPINAGRIFKVKELVSV 56
Cdd:COG1841  1 MKKLKVTLVRSTIGRPPDQRATLKALGLRKINHTVELPDTPAIRGMINKVKHLVTV 56
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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